Wall clock time and date at job start Mon Mar 30 2020 02:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30351 * 1 3 3 Si 1.86802 * 119.99930 * 2 1 4 4 H 1.48496 * 109.47245 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47374 * 300.00084 * 3 2 1 6 6 H 1.48503 * 109.46714 * 59.99839 * 3 2 1 7 7 C 1.40742 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00082 * 197.85681 * 7 2 1 9 9 C 1.40638 * 120.00583 * 17.85613 * 7 2 1 10 10 C 1.41187 * 119.94583 * 205.22054 * 9 7 2 11 11 C 1.36103 * 119.96927 * 180.25387 * 10 9 7 12 12 C 1.40106 * 120.14520 * 359.45514 * 11 10 9 13 13 C 1.41055 * 120.70694 * 0.26263 * 12 11 10 14 14 C 1.37991 * 119.21041 * 0.02562 * 13 12 11 15 15 N 1.39328 * 109.43648 * 179.97438 * 13 12 11 16 16 C 1.34401 * 111.31287 * 359.97438 * 15 13 12 17 17 O 1.21397 * 126.13276 * 180.02562 * 16 15 13 18 18 C 1.47060 * 132.79128 * 180.25632 * 12 11 10 19 19 O 1.21554 * 127.49167 * 359.97438 * 18 12 11 20 20 H 0.96999 * 120.00318 * 0.02562 * 1 2 3 21 21 H 1.08006 * 120.01570 * 359.96835 * 10 9 7 22 22 H 1.07999 * 119.92898 * 179.73851 * 11 10 9 23 23 H 1.08002 * 120.07559 * 180.02562 * 14 13 12 24 24 H 0.97002 * 124.34845 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3035 0.0000 0.0000 3 14 2.2375 1.6178 0.0000 4 1 3.6975 1.3465 0.0006 5 1 1.8788 2.3965 -1.2125 6 1 1.8786 2.3964 1.2125 7 6 2.0072 -1.2189 -0.0005 8 1 3.0482 -1.2416 0.2863 9 6 1.3549 -2.4074 -0.3745 10 6 1.8251 -3.6498 0.1037 11 6 1.1974 -4.8007 -0.2621 12 6 0.0780 -4.7549 -1.1034 13 6 -0.4100 -3.5227 -1.5865 14 6 0.2290 -2.3555 -1.2212 15 7 -1.5210 -3.7494 -2.3961 16 6 -1.8031 -5.0607 -2.4825 17 8 -2.7120 -5.5571 -3.1159 18 6 -0.7979 -5.7976 -1.6585 19 8 -0.7201 -6.9983 -1.4859 20 1 -0.4850 0.8400 -0.0004 21 1 2.6853 -3.6873 0.7557 22 1 1.5601 -5.7511 0.1007 23 1 -0.1331 -1.4043 -1.5826 24 1 -2.0257 -3.0507 -2.8411 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279413.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:23 Heat of formation + Delta-G solvation = -58.517710 kcal Electronic energy + Delta-G solvation = -13539.901491 eV Core-core repulsion = 10996.519064 eV Total energy + Delta-G solvation = -2543.382427 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.053 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.36459 -39.35885 -38.91061 -37.16073 -35.36857 -31.88667 -30.31210 -28.97495 -26.04599 -23.18349 -22.48144 -21.26795 -19.49909 -18.69702 -17.93729 -17.09721 -17.01043 -16.55485 -16.28371 -15.16432 -14.78846 -14.63697 -14.47809 -13.94227 -13.63349 -13.07440 -12.98421 -12.90400 -12.56097 -11.91078 -11.76585 -11.61693 -11.13344 -10.34205 -9.63948 -9.10453 -8.86099 -6.63085 -0.69132 0.84113 1.13781 1.43780 1.55110 1.60852 1.86448 2.09078 2.13965 2.57319 2.87423 3.51513 4.03692 4.19997 4.73271 4.77698 4.84005 4.95805 5.08689 5.37755 5.57454 5.61343 5.79470 5.86836 6.06828 6.38102 6.42271 6.57562 6.70237 6.87213 7.95233 Molecular weight = 217.05amu Principal moments of inertia in cm(-1) A = 0.051065 B = 0.008255 C = 0.007249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.185329 B = 3390.892353 C = 3861.848308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.036 3.964 3 Si 0.991 3.009 4 H -0.249 1.249 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.416 4.416 8 H 0.109 0.891 9 C 0.121 3.879 10 C -0.251 4.251 11 C 0.016 3.984 12 C -0.397 4.397 13 C 0.188 3.812 14 C -0.199 4.199 15 N -0.632 5.632 16 C 0.495 3.505 17 O -0.518 6.518 18 C 0.373 3.627 19 O -0.475 6.475 20 H 0.306 0.694 21 H 0.126 0.874 22 H 0.120 0.880 23 H 0.124 0.876 24 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.414 6.263 0.205 7.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.188 4.188 3 Si 0.810 3.190 4 H -0.172 1.172 5 H -0.187 1.187 6 H -0.189 1.189 7 C -0.440 4.440 8 H 0.127 0.873 9 C 0.116 3.884 10 C -0.270 4.270 11 C -0.003 4.003 12 C -0.402 4.402 13 C 0.092 3.908 14 C -0.221 4.221 15 N -0.278 5.278 16 C 0.279 3.721 17 O -0.395 6.395 18 C 0.257 3.743 19 O -0.357 6.357 20 H 0.118 0.882 21 H 0.144 0.856 22 H 0.138 0.862 23 H 0.142 0.858 24 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 2.722 5.408 -0.027 6.054 hybrid contribution -0.351 0.912 -0.246 1.008 sum 2.370 6.320 -0.273 6.755 Atomic orbital electron populations 1.69606 1.09691 1.32804 1.26756 1.27181 0.95525 1.05367 0.90748 0.84976 0.79872 0.74867 0.79254 1.17188 1.18703 1.18870 1.20557 0.99336 0.91307 1.32821 0.87320 1.17851 0.89732 0.93608 0.87197 1.20909 1.05856 0.91712 1.08533 1.20106 0.90816 0.98209 0.91213 1.19731 1.08288 0.92417 1.19802 1.18227 0.86565 0.95257 0.90766 1.20529 1.01477 0.94491 1.05570 1.43080 1.29407 1.08030 1.47288 1.21227 0.85152 0.84275 0.81398 1.90711 1.32533 1.73383 1.42825 1.22022 0.84323 0.88161 0.79807 1.90478 1.71366 1.16793 1.57064 0.88196 0.85565 0.86170 0.85820 0.73314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -30.84 10.95 21.96 0.24 -30.60 14 2 C 0.04 1.36 5.13 85.52 0.44 1.80 14 3 Si 0.99 28.28 29.60 68.60 2.03 30.31 14 4 H -0.25 -6.92 7.11 99.48 0.71 -6.21 14 5 H -0.26 -7.36 7.11 99.48 0.71 -6.65 14 6 H -0.26 -7.38 7.11 99.48 0.71 -6.68 14 7 C -0.42 -17.04 9.03 23.47 0.21 -16.83 14 8 H 0.11 4.09 7.92 -2.91 -0.02 4.07 14 9 C 0.12 5.29 5.57 -21.30 -0.12 5.17 14 10 C -0.25 -10.29 9.72 22.50 0.22 -10.07 14 11 C 0.02 0.65 10.03 22.23 0.22 0.87 14 12 C -0.40 -17.68 6.35 -19.82 -0.13 -17.80 14 13 C 0.19 7.99 7.14 38.58 0.28 8.26 14 14 C -0.20 -8.66 8.70 22.88 0.20 -8.46 14 15 N -0.63 -24.06 5.94 -304.59 -1.81 -25.87 14 16 C 0.49 21.27 8.59 87.32 0.75 22.02 14 17 O -0.52 -23.91 18.03 -3.38 -0.06 -23.97 14 18 C 0.37 17.11 7.92 27.60 0.22 17.33 14 19 O -0.48 -23.46 18.04 -3.87 -0.07 -23.53 14 20 H 0.31 10.77 8.29 -92.71 -0.77 10.00 14 21 H 0.13 4.57 8.06 -2.91 -0.02 4.55 14 22 H 0.12 4.48 8.06 -2.91 -0.02 4.46 14 23 H 0.12 5.35 6.16 -2.91 -0.02 5.33 14 24 H 0.43 13.39 8.96 -92.71 -0.83 12.56 14 Total: -1.00 -52.99 229.51 3.06 -49.93 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.43 Total: 21.43 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 2.29 Total: 2.29 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -1.57 Total: -56.47 kcal Atomic # 8 Polarization: -47.37 SS G_CDS: -0.13 Total: -47.50 kcal Atomic # 14 Polarization: 28.28 SS G_CDS: 2.03 Total: 30.31 kcal Total: -52.99 3.06 -49.93 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279413.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.583 kcal (2) G-P(sol) polarization free energy of solvation -52.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds