Wall clock time and date at job start Mon Mar 30 2020 02:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 119.99984 * 2 1 4 4 H 1.48507 * 109.47050 * 239.99909 * 3 2 1 5 5 H 1.48497 * 109.47389 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46945 * 120.00054 * 3 2 1 7 7 C 1.39946 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99893 * 163.20770 * 7 2 1 9 9 C 1.41360 * 120.00077 * 343.20822 * 7 2 1 10 10 C 1.40739 * 120.67151 * 334.94943 * 9 7 2 11 11 N 1.31456 * 120.44294 * 180.02562 * 10 9 7 12 12 C 1.32124 * 122.03336 * 359.97438 * 11 10 9 13 13 C 1.38590 * 121.32608 * 359.97438 * 12 11 10 14 14 Cl 1.73596 * 120.30589 * 179.97438 * 13 12 11 15 15 C 1.38358 * 119.38336 * 0.02562 * 13 12 11 16 16 Cl 1.73601 * 120.92231 * 180.02562 * 15 13 12 17 17 H 0.96998 * 119.99964 * 0.02562 * 1 2 3 18 18 H 1.07998 * 119.77495 * 0.04277 * 10 9 7 19 19 H 1.08003 * 119.33338 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0535 -1.2321 -0.2697 9 6 1.3464 -2.4099 0.3547 10 6 0.2091 -2.3840 1.1835 11 7 -0.4023 -3.5008 1.5104 12 6 0.0150 -4.6793 1.0831 13 6 1.1258 -4.7963 0.2627 14 17 1.6513 -6.3582 -0.2829 15 6 1.8126 -3.6567 -0.1167 16 17 3.2087 -3.7568 -1.1436 17 1 -0.4850 0.8400 -0.0004 18 1 -0.1638 -1.4402 1.5530 19 1 -0.5204 -5.5694 1.3791 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306496181.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:37 Heat of formation + Delta-G solvation = -16.461696 kcal Electronic energy + Delta-G solvation = -10232.274762 eV Core-core repulsion = 7993.159242 eV Total energy + Delta-G solvation = -2239.115521 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 216.976 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.38136 -37.45857 -37.15671 -35.99611 -32.68874 -31.53647 -27.72818 -23.93190 -23.54545 -19.60858 -17.95098 -17.42743 -16.65734 -16.20101 -15.03975 -14.74113 -14.35384 -13.55867 -13.21511 -13.13505 -12.83418 -12.83118 -12.53953 -12.10792 -11.93405 -11.44844 -11.25545 -10.21514 -9.93326 -9.58678 -8.89225 -6.61398 0.42658 0.59916 1.13108 1.41610 1.51843 1.55515 1.61940 2.16281 2.56541 3.40315 4.05656 4.34490 4.51132 4.87368 5.01812 5.14511 5.40666 5.77977 6.18879 6.41949 6.58008 7.48097 8.09339 Molecular weight = 216.98amu Principal moments of inertia in cm(-1) A = 0.043019 B = 0.011364 C = 0.009207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.721147 B = 2463.226636 C = 3040.577278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.039 3.961 3 Si 0.991 3.009 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.255 1.255 7 C -0.447 4.447 8 H 0.095 0.905 9 C 0.053 3.947 10 C 0.039 3.961 11 N -0.471 5.471 12 C -0.039 4.039 13 C -0.034 4.034 14 Cl -0.064 7.064 15 C -0.135 4.135 16 Cl -0.070 7.070 17 H 0.302 0.698 18 H 0.154 0.846 19 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.190 -1.010 -0.526 3.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.180 4.180 3 Si 0.810 3.190 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.179 1.179 7 C -0.474 4.474 8 H 0.113 0.887 9 C 0.047 3.953 10 C -0.127 4.127 11 N -0.179 5.179 12 C -0.192 4.192 13 C -0.064 4.064 14 Cl -0.035 7.035 15 C -0.169 4.169 16 Cl -0.041 7.041 17 H 0.113 0.887 18 H 0.171 0.829 19 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.396 -1.055 -0.156 2.623 hybrid contribution 1.029 0.306 -0.779 1.326 sum 3.425 -0.748 -0.934 3.628 Atomic orbital electron populations 1.69758 1.09178 1.32313 1.31136 1.26926 0.95564 1.04942 0.90609 0.85086 0.78805 0.74613 0.80471 1.18244 1.18643 1.17930 1.19911 0.98612 0.90893 1.38030 0.88680 1.18646 0.93387 0.91949 0.91281 1.23061 0.95797 0.95504 0.98313 1.67245 1.30036 0.98770 1.21841 1.22125 0.97415 0.95991 1.03673 1.21761 0.98104 0.85407 1.01111 1.98283 1.90177 1.26100 1.88967 1.21139 0.96584 0.93850 1.05352 1.98225 1.40788 1.98373 1.66755 0.88654 0.82852 0.82142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.26 10.96 21.83 0.24 -37.02 13 2 C 0.04 1.74 5.17 85.26 0.44 2.18 13 3 Si 0.99 33.69 29.59 68.60 2.03 35.72 13 4 H -0.26 -8.65 7.11 99.48 0.71 -7.94 13 5 H -0.26 -8.36 7.11 99.48 0.71 -7.66 13 6 H -0.26 -8.50 7.11 99.48 0.71 -7.80 13 7 C -0.45 -21.64 8.59 23.45 0.20 -21.44 13 8 H 0.10 4.46 7.22 -2.91 -0.02 4.44 13 9 C 0.05 2.70 5.58 -21.17 -0.12 2.58 13 10 C 0.04 2.00 9.89 85.36 0.84 2.85 13 11 N -0.47 -22.98 10.33 -193.60 -2.00 -24.98 13 12 C -0.04 -1.74 10.97 84.73 0.93 -0.81 13 13 C -0.03 -1.51 6.34 22.38 0.14 -1.36 13 14 Cl -0.06 -2.33 28.09 -2.72 -0.08 -2.40 13 15 C -0.13 -6.39 6.42 23.03 0.15 -6.25 13 16 Cl -0.07 -2.94 26.89 -2.72 -0.07 -3.01 13 17 H 0.30 12.51 8.30 -92.71 -0.77 11.74 13 18 H 0.15 7.86 6.18 -2.91 -0.02 7.85 13 19 H 0.16 6.12 8.06 -2.91 -0.02 6.10 13 Total: -1.00 -51.22 209.90 4.00 -47.23 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.29 Total: 6.73 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 2.59 Total: -22.26 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -1.76 Total: -62.00 kcal Atomic # 14 Polarization: 33.69 SS G_CDS: 2.03 Total: 35.72 kcal Atomic # 17 Polarization: -5.26 SS G_CDS: -0.15 Total: -5.41 kcal Total: -51.22 4.00 -47.23 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306496181.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.766 kcal (2) G-P(sol) polarization free energy of solvation -51.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds