Wall clock time and date at job start Mon Mar 30 2020 02:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53008 * 109.46899 * 210.99068 * 3 2 1 5 5 C 1.50701 * 109.46998 * 180.02562 * 4 3 2 6 6 C 1.38817 * 119.73168 * 90.00357 * 5 4 3 7 7 C 1.38305 * 120.59048 * 180.02562 * 6 5 4 8 8 C 1.38451 * 120.05206 * 359.97438 * 7 6 5 9 9 O 1.35638 * 120.26612 * 179.97438 * 8 7 6 10 10 C 1.41323 * 119.46595 * 0.02562 * 8 7 6 11 11 C 1.41157 * 120.28741 * 179.97438 * 10 8 7 12 12 H 1.07997 * 119.99759 * 24.47342 * 11 10 8 13 13 C 1.39929 * 120.00021 * 204.75449 * 11 10 8 14 14 N 1.30874 * 120.00130 * 17.88348 * 13 11 10 15 15 Si 1.86800 * 120.00304 * 197.88511 * 13 11 10 16 16 H 1.48505 * 109.47129 * 89.99554 * 15 13 11 17 17 H 1.48491 * 109.47197 * 210.00088 * 15 13 11 18 18 H 1.48498 * 109.46773 * 330.00140 * 15 13 11 19 19 C 1.36491 * 119.72694 * 270.25639 * 5 4 3 20 20 H 1.09004 * 109.47388 * 90.99496 * 3 2 1 21 21 H 1.08996 * 109.47955 * 330.98963 * 3 2 1 22 22 H 1.08998 * 109.47047 * 60.00335 * 4 3 2 23 23 H 1.09004 * 109.46609 * 300.00029 * 4 3 2 24 24 H 1.07997 * 119.70641 * 359.96837 * 6 5 4 25 25 H 1.07996 * 119.97578 * 179.97438 * 7 6 5 26 26 H 0.96698 * 114.00228 * 275.11299 * 9 8 7 27 27 H 0.96997 * 120.00081 * 180.02562 * 14 13 11 28 28 H 1.07998 * 120.03770 * 0.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.2375 0.7428 5 6 4.6244 1.2386 0.7423 6 6 5.3121 1.8599 -0.2912 7 6 6.6950 1.8711 -0.3097 8 6 7.4070 1.2597 0.7082 9 8 8.7633 1.2676 0.6941 10 6 6.7092 0.6265 1.7614 11 6 7.4177 -0.0026 2.8078 12 1 8.4250 0.3090 3.0415 13 6 6.8171 -1.0339 3.5383 14 7 5.7698 -1.6533 3.0563 15 14 7.5100 -1.5267 5.2016 16 1 6.8553 -0.7261 6.2674 17 1 7.2521 -2.9699 5.4374 18 1 8.9734 -1.2754 5.2222 19 6 5.3020 0.6240 1.7553 20 1 2.9714 0.0187 -1.0275 21 1 2.9719 -0.8978 0.4983 22 1 2.7541 1.2196 1.7703 23 1 2.7536 2.1361 0.2443 24 1 4.7624 2.3381 -1.0884 25 1 7.2199 2.3571 -1.1188 26 1 9.1553 0.5561 0.1696 27 1 5.3532 -2.3679 3.5628 28 1 4.7588 0.1392 2.5529 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306867814.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:30 Heat of formation + Delta-G solvation = -17.194428 kcal Electronic energy + Delta-G solvation = -13604.991707 eV Core-core repulsion = 11199.234287 eV Total energy + Delta-G solvation = -2405.757420 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.38634 -36.70701 -35.57176 -34.02976 -32.47120 -29.70633 -28.27047 -25.34344 -23.60179 -21.26823 -19.82019 -17.37611 -17.13851 -16.67877 -15.35587 -14.90074 -14.35201 -13.95165 -13.88233 -13.40205 -12.80330 -12.63961 -12.22962 -12.11412 -11.64157 -11.52247 -11.32794 -11.06596 -10.87744 -10.58466 -10.35253 -10.28739 -9.75000 -9.25712 -9.01421 -7.54478 -7.28138 -6.86435 -4.42514 2.56655 2.78925 3.02013 3.03472 3.03580 3.07518 3.16048 3.87068 4.29021 4.49661 5.29855 5.43246 5.63425 5.75294 5.85205 6.05477 6.12268 6.32161 6.45691 6.51132 6.97071 7.09832 7.23808 7.41039 7.65054 7.78999 7.84048 7.97365 8.15595 8.41338 8.69494 8.76126 9.15005 10.05644 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.022898 B = 0.009840 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.538738 B = 2844.977077 C = 3929.817239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.219 3.781 3 C -0.025 4.025 4 C -0.062 4.062 5 C -0.081 4.081 6 C -0.225 4.225 7 C -0.113 4.113 8 C -0.028 4.028 9 O -0.497 6.497 10 C 0.095 3.905 11 C -0.447 4.447 12 H 0.084 0.916 13 C 0.076 3.924 14 N -0.791 5.791 15 Si 0.909 3.091 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.261 1.261 19 C -0.145 4.145 20 H 0.107 0.893 21 H 0.116 0.884 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.356 0.644 27 H 0.282 0.718 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.358 0.177 -2.386 2.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.098 4.098 3 C -0.065 4.065 4 C -0.101 4.101 5 C -0.082 4.082 6 C -0.245 4.245 7 C -0.132 4.132 8 C -0.073 4.073 9 O -0.303 6.303 10 C 0.092 3.908 11 C -0.476 4.476 12 H 0.102 0.898 13 C -0.142 4.142 14 N -0.416 5.416 15 Si 0.734 3.266 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.185 1.185 19 C -0.164 4.164 20 H 0.125 0.875 21 H 0.134 0.866 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.110 0.890 25 H 0.111 0.889 26 H 0.207 0.793 27 H 0.093 0.907 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.297 0.465 -1.965 3.059 hybrid contribution 0.838 -0.774 0.366 1.198 sum -1.459 -0.309 -1.599 2.187 Atomic orbital electron populations 1.81152 1.13346 1.09706 1.09897 1.29630 0.95611 0.92306 0.92261 1.19460 0.80110 1.02527 1.04379 1.20355 0.94107 0.95430 1.00168 1.18992 0.92447 1.00175 0.96554 1.20059 0.93121 1.10173 1.01110 1.20825 0.94251 1.00695 0.97450 1.18538 0.81822 1.09812 0.97142 1.84743 1.17812 1.53329 1.74462 1.17845 0.92036 0.89610 0.91335 1.19553 1.01555 1.14286 1.12236 0.89782 1.25946 0.94223 0.95035 0.99044 1.69812 1.18238 1.17170 1.36365 0.86285 0.80626 0.77951 0.81783 1.19200 1.20309 1.18523 1.20883 0.93858 1.02468 0.99203 0.87488 0.86650 0.91268 0.91656 0.89021 0.88879 0.79252 0.90737 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.89 18.54 42.16 0.78 -7.11 15 2 C 0.22 3.24 15.43 -20.76 -0.32 2.92 15 3 C -0.02 -0.34 5.68 -29.52 -0.17 -0.50 15 4 C -0.06 -0.96 5.28 -27.88 -0.15 -1.11 15 5 C -0.08 -1.61 5.09 -105.04 -0.54 -2.15 15 6 C -0.23 -4.45 9.68 -39.34 -0.38 -4.84 15 7 C -0.11 -2.41 9.98 -39.48 -0.39 -2.80 15 8 C -0.03 -0.66 6.74 -38.33 -0.26 -0.92 15 9 O -0.50 -10.98 12.79 -18.61 -0.24 -11.22 15 10 C 0.09 2.37 5.58 -106.68 -0.60 1.78 15 11 C -0.45 -11.35 8.72 -37.84 -0.33 -11.68 15 12 H 0.08 2.16 7.65 -52.49 -0.40 1.75 15 13 C 0.08 1.78 5.14 -17.33 -0.09 1.70 15 14 N -0.79 -18.68 10.96 55.55 0.61 -18.07 15 15 Si 0.91 17.91 29.60 -169.99 -5.03 12.88 15 16 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 17 H -0.28 -5.34 7.11 56.52 0.40 -4.94 15 18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 15 19 C -0.14 -3.35 8.27 -39.27 -0.32 -3.67 15 20 H 0.11 1.28 8.14 -51.93 -0.42 0.86 15 21 H 0.12 1.61 8.14 -51.93 -0.42 1.18 15 22 H 0.07 1.08 8.08 -51.93 -0.42 0.66 15 23 H 0.06 0.93 8.08 -51.93 -0.42 0.51 15 24 H 0.09 1.58 8.06 -52.49 -0.42 1.15 15 25 H 0.09 1.78 8.06 -52.49 -0.42 1.35 15 26 H 0.36 6.32 9.06 45.56 0.41 6.73 15 27 H 0.28 6.08 8.30 -40.82 -0.34 5.74 15 28 H 0.12 2.91 6.16 -52.49 -0.32 2.59 15 LS Contribution 258.54 15.07 3.90 3.90 Total: -1.00 -27.42 258.54 -5.50 -32.92 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -1.98 Total: 7.99 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -3.54 Total: -21.28 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 1.39 Total: -25.18 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.24 Total: -11.22 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.42 -5.50 -32.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306867814.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.724 kcal (2) G-P(sol) polarization free energy of solvation -27.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds