Wall clock time and date at job start Mon Mar 30 2020 02:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53008 * 109.46899 * 210.99068 * 3 2 1 5 5 C 1.50701 * 109.46998 * 180.02562 * 4 3 2 6 6 C 1.38817 * 119.73168 * 90.00357 * 5 4 3 7 7 C 1.38305 * 120.59048 * 180.02562 * 6 5 4 8 8 C 1.38451 * 120.05206 * 359.97438 * 7 6 5 9 9 O 1.35638 * 120.26612 * 179.97438 * 8 7 6 10 10 C 1.41323 * 119.46595 * 0.02562 * 8 7 6 11 11 C 1.41157 * 120.28741 * 179.97438 * 10 8 7 12 12 H 1.07997 * 119.99759 * 24.47342 * 11 10 8 13 13 C 1.39929 * 120.00021 * 204.75449 * 11 10 8 14 14 N 1.30874 * 120.00130 * 17.88348 * 13 11 10 15 15 Si 1.86800 * 120.00304 * 197.88511 * 13 11 10 16 16 H 1.48505 * 109.47129 * 89.99554 * 15 13 11 17 17 H 1.48491 * 109.47197 * 210.00088 * 15 13 11 18 18 H 1.48498 * 109.46773 * 330.00140 * 15 13 11 19 19 C 1.36491 * 119.72694 * 270.25639 * 5 4 3 20 20 H 1.09004 * 109.47388 * 90.99496 * 3 2 1 21 21 H 1.08996 * 109.47955 * 330.98963 * 3 2 1 22 22 H 1.08998 * 109.47047 * 60.00335 * 4 3 2 23 23 H 1.09004 * 109.46609 * 300.00029 * 4 3 2 24 24 H 1.07997 * 119.70641 * 359.96837 * 6 5 4 25 25 H 1.07996 * 119.97578 * 179.97438 * 7 6 5 26 26 H 0.96698 * 114.00228 * 275.11299 * 9 8 7 27 27 H 0.96997 * 120.00081 * 180.02562 * 14 13 11 28 28 H 1.07998 * 120.03770 * 0.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.2375 0.7428 5 6 4.6244 1.2386 0.7423 6 6 5.3121 1.8599 -0.2912 7 6 6.6950 1.8711 -0.3097 8 6 7.4070 1.2597 0.7082 9 8 8.7633 1.2676 0.6941 10 6 6.7092 0.6265 1.7614 11 6 7.4177 -0.0026 2.8078 12 1 8.4250 0.3090 3.0415 13 6 6.8171 -1.0339 3.5383 14 7 5.7698 -1.6533 3.0563 15 14 7.5100 -1.5267 5.2016 16 1 6.8553 -0.7261 6.2674 17 1 7.2521 -2.9699 5.4374 18 1 8.9734 -1.2754 5.2222 19 6 5.3020 0.6240 1.7553 20 1 2.9714 0.0187 -1.0275 21 1 2.9719 -0.8978 0.4983 22 1 2.7541 1.2196 1.7703 23 1 2.7536 2.1361 0.2443 24 1 4.7624 2.3381 -1.0884 25 1 7.2199 2.3571 -1.1188 26 1 9.1553 0.5561 0.1696 27 1 5.3532 -2.3679 3.5628 28 1 4.7588 0.1392 2.5529 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306867814.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:30 Heat of formation + Delta-G solvation = -33.365425 kcal Electronic energy + Delta-G solvation = -13605.692934 eV Core-core repulsion = 11199.234287 eV Total energy + Delta-G solvation = -2406.458647 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.04514 -38.04943 -37.14092 -35.72457 -33.90423 -31.43498 -29.79564 -27.08640 -25.01361 -22.97069 -21.44499 -19.09329 -18.50194 -18.26297 -16.99174 -16.30366 -15.94857 -15.52721 -15.39517 -14.78402 -14.33740 -14.11061 -13.75634 -13.47238 -13.26434 -13.02166 -12.83633 -12.65600 -12.37750 -12.11603 -11.93498 -11.62477 -11.41356 -10.97809 -10.71931 -9.28435 -8.96217 -8.58758 -6.25648 0.91739 1.11528 1.41690 1.52219 1.54537 1.82684 1.85066 2.23929 2.73565 3.14006 3.61967 4.10071 4.27117 4.40108 4.47190 4.61073 4.85832 4.92985 5.05176 5.19973 5.27506 5.40458 5.54930 5.71836 5.97299 6.12243 6.27622 6.43242 6.62113 6.67430 6.95757 6.97089 7.47678 8.34086 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.022898 B = 0.009840 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.538738 B = 2844.977077 C = 3929.817239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.244 3.756 3 C -0.013 4.013 4 C -0.058 4.058 5 C -0.073 4.073 6 C -0.213 4.213 7 C -0.121 4.121 8 C -0.051 4.051 9 O -0.509 6.509 10 C 0.060 3.940 11 C -0.488 4.488 12 H 0.065 0.935 13 C 0.044 3.956 14 N -0.812 5.812 15 Si 0.972 3.028 16 H -0.265 1.265 17 H -0.266 1.266 18 H -0.267 1.267 19 C -0.164 4.164 20 H 0.132 0.868 21 H 0.112 0.888 22 H 0.065 0.935 23 H 0.088 0.912 24 H 0.130 0.870 25 H 0.116 0.884 26 H 0.373 0.627 27 H 0.289 0.711 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.144 0.489 -3.276 3.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.072 4.072 3 C -0.053 4.053 4 C -0.097 4.097 5 C -0.073 4.073 6 C -0.232 4.232 7 C -0.139 4.139 8 C -0.096 4.096 9 O -0.318 6.318 10 C 0.057 3.943 11 C -0.517 4.517 12 H 0.083 0.917 13 C -0.172 4.172 14 N -0.438 5.438 15 Si 0.794 3.206 16 H -0.189 1.189 17 H -0.190 1.190 18 H -0.191 1.191 19 C -0.184 4.184 20 H 0.150 0.850 21 H 0.130 0.870 22 H 0.084 0.916 23 H 0.107 0.893 24 H 0.148 0.852 25 H 0.134 0.866 26 H 0.227 0.773 27 H 0.100 0.900 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.085 0.776 -2.873 4.287 hybrid contribution 1.084 -0.788 0.513 1.435 sum -2.001 -0.013 -2.361 3.095 Atomic orbital electron populations 1.81191 1.14524 1.10912 1.11326 1.29661 0.95453 0.91127 0.90984 1.19395 0.79071 1.01316 1.05475 1.20333 0.91075 0.97418 1.00844 1.19316 0.94721 0.98157 0.95130 1.20534 0.92801 1.08455 1.01383 1.21141 0.95162 1.00279 0.97349 1.18860 0.82355 1.10593 0.97805 1.84664 1.17649 1.54255 1.75187 1.18235 0.93294 0.90650 0.92088 1.19591 1.01385 1.16291 1.14458 0.91696 1.26538 0.94579 0.94477 1.01633 1.69823 1.18979 1.17549 1.37407 0.85353 0.79459 0.78092 0.77745 1.18945 1.19004 1.19075 1.20875 0.93315 1.03884 1.00304 0.84983 0.86977 0.91592 0.89301 0.85241 0.86601 0.77348 0.90018 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.13 18.54 20.01 0.37 -15.76 15 2 C 0.24 6.58 15.43 89.44 1.38 7.96 15 3 C -0.01 -0.30 5.68 28.79 0.16 -0.14 15 4 C -0.06 -1.63 5.28 29.85 0.16 -1.47 15 5 C -0.07 -2.73 5.09 -20.13 -0.10 -2.83 15 6 C -0.21 -7.69 9.68 22.42 0.22 -7.47 15 7 C -0.12 -4.88 9.98 22.34 0.22 -4.65 15 8 C -0.05 -2.41 6.74 23.08 0.16 -2.26 15 9 O -0.51 -22.74 12.79 -89.51 -1.15 -23.89 15 10 C 0.06 3.06 5.58 -21.20 -0.12 2.95 15 11 C -0.49 -25.67 8.72 23.40 0.20 -25.47 15 12 H 0.06 3.51 7.65 -2.91 -0.02 3.49 15 13 C 0.04 2.10 5.14 85.25 0.44 2.54 15 14 N -0.81 -38.85 10.96 21.83 0.24 -38.61 15 15 Si 0.97 37.26 29.60 68.60 2.03 39.29 15 16 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 17 H -0.27 -9.56 7.11 99.48 0.71 -8.85 15 18 H -0.27 -10.31 7.11 99.48 0.71 -9.61 15 19 C -0.16 -7.60 8.27 22.47 0.19 -7.41 15 20 H 0.13 2.58 8.14 -2.38 -0.02 2.56 15 21 H 0.11 2.87 8.14 -2.39 -0.02 2.85 15 22 H 0.07 1.92 8.08 -2.39 -0.02 1.90 15 23 H 0.09 2.13 8.08 -2.38 -0.02 2.11 15 24 H 0.13 3.73 8.06 -2.91 -0.02 3.71 15 25 H 0.12 4.08 8.06 -2.91 -0.02 4.06 15 26 H 0.37 13.39 9.06 -74.06 -0.67 12.72 15 27 H 0.29 12.51 8.30 -92.71 -0.77 11.74 15 28 H 0.11 5.26 6.16 -2.91 -0.02 5.24 15 Total: -1.00 -59.47 258.54 4.92 -54.56 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.52 Total: 22.68 kcal Atomic # 6 Polarization: -41.17 SS G_CDS: 2.90 Total: -38.27 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.61 Total: -54.37 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -1.15 Total: -23.89 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.29 kcal Total: -59.47 4.92 -54.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306867814.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.194 kcal (2) G-P(sol) polarization free energy of solvation -59.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds