Wall clock time and date at job start Mon Mar 30 2020 02:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86808 * 119.99561 * 2 1 4 4 H 1.48505 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47071 * 299.99924 * 3 2 1 6 6 H 1.48493 * 109.46825 * 60.00525 * 3 2 1 7 7 C 1.39912 * 120.00630 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00580 * 163.11750 * 7 2 1 9 9 C 1.41340 * 120.00059 * 343.11685 * 7 2 1 10 10 C 1.41213 * 120.02479 * 154.40924 * 9 7 2 11 11 C 1.36120 * 120.47441 * 180.02562 * 10 9 7 12 12 C 1.39308 * 120.36396 * 359.96073 * 11 10 9 13 13 O 1.34866 * 133.57694 * 180.02562 * 12 11 10 14 14 C 1.34827 * 107.97973 * 179.97438 * 13 12 11 15 15 C 1.47155 * 124.96529 * 179.97438 * 14 13 12 16 16 O 1.21253 * 120.00470 * 180.02562 * 15 14 13 17 17 N 1.30881 * 110.07376 * 359.97438 * 14 13 12 18 18 C 1.34677 * 108.92642 * 0.02562 * 17 14 13 19 19 C 1.39542 * 133.55003 * 180.02562 * 18 17 14 20 20 H 0.96996 * 120.00533 * 359.97438 * 1 2 3 21 21 H 1.08005 * 119.76363 * 359.97438 * 10 9 7 22 22 H 1.08000 * 119.81694 * 179.97438 * 11 10 9 23 23 H 1.08007 * 120.00140 * 0.02562 * 15 14 13 24 24 H 1.08000 * 120.32156 * 359.72059 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6179 0.0000 4 1 3.7025 1.3466 -0.0006 5 1 1.8836 2.3965 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0082 -1.2116 -0.0005 8 1 3.0533 -1.2316 -0.2722 9 6 1.3473 -2.4095 0.3544 10 6 1.8186 -3.6479 -0.1339 11 6 1.1888 -4.8070 0.2017 12 6 0.0709 -4.7861 1.0326 13 8 -0.7394 -5.7450 1.5252 14 6 -1.6766 -5.1466 2.2879 15 6 -2.7528 -5.8475 3.0062 16 8 -3.5501 -5.2179 3.6681 17 7 -1.4892 -3.8513 2.2960 18 6 -0.4177 -3.5602 1.5339 19 6 0.2247 -2.3692 1.1931 20 1 -0.4851 0.8400 0.0004 21 1 2.6844 -3.6754 -0.7790 22 1 1.5581 -5.7482 -0.1781 23 1 -2.8326 -6.9228 2.9438 24 1 -0.1425 -1.4251 1.5677 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306937123.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:22 Heat of formation + Delta-G solvation = -22.227090 kcal Electronic energy + Delta-G solvation = -13443.661479 eV Core-core repulsion = 10901.852731 eV Total energy + Delta-G solvation = -2541.808748 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.053 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.86230 -40.12292 -38.68774 -35.68211 -35.30937 -31.54888 -30.81581 -28.06483 -26.30451 -23.36261 -22.79976 -22.00469 -19.77690 -18.60867 -18.14127 -17.65792 -17.13745 -16.61681 -16.16777 -15.25287 -15.18742 -14.67254 -14.60019 -13.79391 -13.41873 -12.87011 -12.82966 -12.49546 -12.31490 -12.12181 -11.83272 -11.44821 -11.25563 -11.06945 -9.48821 -9.23088 -8.71481 -6.44912 -0.56814 0.70498 0.91929 1.39575 1.46233 1.56159 1.61069 2.01800 2.18141 2.59525 2.77063 3.48482 3.92228 4.13709 4.22204 4.50094 4.66282 4.76229 5.01382 5.16836 5.41583 5.52449 5.69091 5.77790 5.93294 6.04681 6.37993 6.74385 6.81309 6.85508 8.26068 Molecular weight = 217.05amu Principal moments of inertia in cm(-1) A = 0.045930 B = 0.007953 C = 0.006905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.473570 B = 3519.906564 C = 4054.140141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.988 3.012 4 H -0.246 1.246 5 H -0.266 1.266 6 H -0.273 1.273 7 C -0.480 4.480 8 H 0.099 0.901 9 C 0.075 3.925 10 C -0.145 4.145 11 C -0.076 4.076 12 C -0.091 4.091 13 O -0.195 6.195 14 C 0.112 3.888 15 C 0.465 3.535 16 O -0.457 6.457 17 N -0.473 5.473 18 C 0.013 3.987 19 C -0.172 4.172 20 H 0.288 0.712 21 H 0.150 0.850 22 H 0.155 0.845 23 H 0.223 0.777 24 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.533 -8.114 0.262 8.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.187 4.187 3 Si 0.808 3.192 4 H -0.169 1.169 5 H -0.191 1.191 6 H -0.198 1.198 7 C -0.509 4.509 8 H 0.117 0.883 9 C 0.071 3.929 10 C -0.164 4.164 11 C -0.094 4.094 12 C -0.141 4.141 13 O -0.085 6.085 14 C -0.096 4.096 15 C 0.320 3.680 16 O -0.323 6.323 17 N -0.210 5.210 18 C -0.100 4.100 19 C -0.194 4.194 20 H 0.099 0.901 21 H 0.167 0.833 22 H 0.173 0.827 23 H 0.238 0.762 24 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.491 -7.254 0.943 7.332 hybrid contribution 0.460 0.733 -0.397 0.952 sum 0.951 -6.521 0.546 6.613 Atomic orbital electron populations 1.69913 1.09513 1.30814 1.34723 1.26937 0.95394 1.05257 0.91142 0.85065 0.79836 0.75687 0.78603 1.16924 1.19064 1.19801 1.19923 0.98611 0.91344 1.40989 0.88330 1.17828 0.91394 0.94210 0.89452 1.21315 1.02171 0.90963 1.01933 1.19579 0.92133 1.00118 0.97587 1.20652 0.99597 0.85851 1.08022 1.84287 1.35319 1.35384 1.53552 1.28253 0.95715 0.88280 0.97397 1.24336 0.74821 0.96244 0.72644 1.90608 1.36704 1.72862 1.32134 1.70268 1.16535 1.15047 1.19179 1.19975 0.94410 0.96197 0.99426 1.20441 1.01223 0.93744 1.03988 0.90092 0.83260 0.82747 0.76157 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.94 10.96 21.82 0.24 -43.70 14 2 C 0.03 1.39 5.14 85.24 0.44 1.83 14 3 Si 0.99 37.02 29.59 68.60 2.03 39.05 14 4 H -0.25 -8.65 7.11 99.48 0.71 -7.94 14 5 H -0.27 -9.56 7.11 99.48 0.71 -8.86 14 6 H -0.27 -10.22 7.11 99.48 0.71 -9.52 14 7 C -0.48 -24.17 9.04 23.44 0.21 -23.96 14 8 H 0.10 4.52 7.90 -2.91 -0.02 4.50 14 9 C 0.07 3.88 5.56 -21.31 -0.12 3.76 14 10 C -0.15 -6.23 9.71 22.51 0.22 -6.01 14 11 C -0.08 -3.02 9.98 22.03 0.22 -2.80 14 12 C -0.09 -4.15 7.45 23.25 0.17 -3.97 14 13 O -0.19 -7.55 10.80 -13.29 -0.14 -7.69 14 14 C 0.11 4.32 8.07 87.18 0.70 5.03 14 15 C 0.47 11.85 11.78 70.16 0.83 12.67 14 16 O -0.46 -15.31 17.88 -2.95 -0.05 -15.37 14 17 N -0.47 -23.59 11.24 -298.20 -3.35 -26.94 14 18 C 0.01 0.68 7.20 39.74 0.29 0.97 14 19 C -0.17 -9.67 8.75 23.06 0.20 -9.47 14 20 H 0.29 14.04 8.30 -92.71 -0.77 13.27 14 21 H 0.15 5.35 8.06 -2.91 -0.02 5.33 14 22 H 0.15 4.70 8.06 -2.91 -0.02 4.68 14 23 H 0.22 2.07 8.06 -2.91 -0.02 2.05 14 24 H 0.10 6.14 6.18 -2.91 -0.02 6.13 14 Total: -1.00 -70.09 231.04 3.12 -66.97 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 1.24 Total: 9.64 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 3.16 Total: -21.96 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -3.11 Total: -70.65 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.20 Total: -23.06 kcal Atomic # 14 Polarization: 37.02 SS G_CDS: 2.03 Total: 39.05 kcal Total: -70.09 3.12 -66.97 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306937123.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.742 kcal (2) G-P(sol) polarization free energy of solvation -70.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds