Wall clock time and date at job start Mon Mar 30 2020 02:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86800 * 120.00082 * 2 1 4 4 H 1.48498 * 109.46918 * 274.98107 * 3 2 1 5 5 H 1.48499 * 109.46996 * 34.98050 * 3 2 1 6 6 H 1.48498 * 109.47058 * 154.97777 * 3 2 1 7 7 C 1.40288 * 119.99542 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99832 * 185.99824 * 7 2 1 9 9 C 1.39750 * 120.00123 * 6.00149 * 7 2 1 10 10 N 1.33266 * 126.53496 * 353.90523 * 9 7 2 11 11 N 1.28517 * 109.75100 * 179.88235 * 10 9 7 12 12 C 1.32452 * 110.13841 * 0.39321 * 11 10 9 13 13 C 1.47415 * 126.27886 * 179.79804 * 12 11 10 14 14 C 1.40224 * 120.96797 * 179.68065 * 13 12 11 15 15 N 1.32101 * 118.88770 * 179.69834 * 14 13 12 16 16 C 1.31889 * 120.99680 * 0.60724 * 15 14 13 17 17 N 1.31901 * 122.16317 * 359.66296 * 16 15 14 18 18 C 1.32096 * 120.99335 * 0.02562 * 17 16 15 19 19 N 1.36919 * 107.44243 * 359.76106 * 12 11 10 20 20 H 0.97003 * 127.13189 * 179.97438 * 19 12 11 21 21 H 0.97000 * 120.00194 * 0.02562 * 1 2 3 22 22 H 1.08003 * 120.55348 * 359.97438 * 14 13 12 23 23 H 1.08006 * 118.91998 * 179.68005 * 16 15 14 24 24 H 1.08002 * 120.55307 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1071 -1.3948 5 1 1.4947 2.6200 0.8027 6 1 3.5869 1.4120 0.5922 7 6 2.0080 -1.2150 0.0005 8 1 3.0836 -1.2176 0.0983 9 6 1.3149 -2.4220 -0.1255 10 7 -0.0083 -2.5792 -0.1398 11 7 -0.2963 -3.8246 -0.2730 12 6 0.8134 -4.5442 -0.3439 13 6 0.8955 -6.0083 -0.4942 14 6 2.1362 -6.6581 -0.5642 15 7 2.1618 -7.9725 -0.6930 16 6 1.0447 -8.6696 -0.7675 17 7 -0.1436 -8.0998 -0.7115 18 6 -0.2649 -6.7913 -0.5774 19 7 1.8704 -3.6786 -0.2526 20 1 2.8140 -3.9025 -0.2728 21 1 -0.4850 0.8400 -0.0004 22 1 3.0553 -6.0937 -0.5093 23 1 1.1048 -9.7424 -0.8776 24 1 -1.2414 -6.3322 -0.5319 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307075540.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:03 Heat of formation + Delta-G solvation = 105.781942 kcal Electronic energy + Delta-G solvation = -13317.981452 eV Core-core repulsion = 10846.309095 eV Total energy + Delta-G solvation = -2471.672357 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.066 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.00659 -40.20352 -34.02122 -33.45541 -32.67598 -31.77810 -28.90435 -26.07953 -24.20352 -23.79515 -21.05522 -20.30957 -18.01316 -17.28902 -16.95270 -16.08925 -15.19516 -14.64918 -14.43054 -13.89027 -13.40143 -13.33303 -13.15125 -11.72606 -11.51204 -11.30033 -10.91992 -10.54806 -10.53793 -10.07514 -9.98653 -9.42924 -9.27157 -9.05015 -8.64541 -7.59766 -6.89355 -4.82550 0.97584 1.36804 2.82256 2.95120 2.99584 3.31526 3.70101 4.04320 4.09774 4.39767 4.44283 4.55042 4.87155 5.10908 5.12501 5.48033 5.70444 6.14449 6.61679 6.69554 6.82412 6.97246 7.20051 7.23240 7.85821 7.95007 8.35306 8.45794 8.74045 10.02419 10.38438 Molecular weight = 217.07amu Principal moments of inertia in cm(-1) A = 0.082019 B = 0.006523 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.300817 B = 4291.641683 C = 4619.984685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.723 5.723 2 C 0.075 3.925 3 Si 0.926 3.074 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.437 4.437 8 H 0.090 0.910 9 C 0.346 3.654 10 N -0.324 5.324 11 N -0.249 5.249 12 C 0.072 3.928 13 C -0.048 4.048 14 C 0.120 3.880 15 N -0.511 5.511 16 C 0.249 3.751 17 N -0.510 5.510 18 C 0.151 3.849 19 N -0.640 5.640 20 H 0.406 0.594 21 H 0.285 0.715 22 H 0.157 0.843 23 H 0.189 0.811 24 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.663 -5.187 -0.687 7.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.152 4.152 3 Si 0.749 3.251 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.476 4.476 8 H 0.108 0.892 9 C 0.106 3.894 10 N -0.175 5.175 11 N -0.097 5.097 12 C -0.184 4.184 13 C -0.055 4.055 14 C -0.049 4.049 15 N -0.224 5.224 16 C -0.039 4.039 17 N -0.223 5.223 18 C -0.018 4.018 19 N -0.261 5.261 20 H 0.242 0.758 21 H 0.096 0.904 22 H 0.175 0.825 23 H 0.206 0.794 24 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.854 -5.672 -0.735 6.392 hybrid contribution 2.295 1.260 0.052 2.619 sum 5.149 -4.413 -0.684 6.815 Atomic orbital electron populations 1.69924 1.07294 1.29422 1.27929 1.25914 0.95012 1.01145 0.93165 0.86012 0.80094 0.79709 0.79288 1.19208 1.19736 1.18429 1.18327 0.94792 0.87415 1.47041 0.89204 1.21551 0.89897 0.84218 0.93711 1.75704 1.09257 1.04693 1.27886 1.74357 1.23222 1.00666 1.11502 1.21252 0.86150 0.89934 1.21114 1.19378 0.95799 0.90717 0.99647 1.23053 0.96810 0.90272 0.94743 1.68208 1.33063 1.07844 1.13289 1.24707 0.83036 1.00767 0.95362 1.68331 1.28552 1.12248 1.13179 1.23322 0.98996 0.88019 0.91479 1.43925 1.08176 1.07434 1.66579 0.75783 0.90420 0.82542 0.79423 0.80724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.54 11.96 55.57 0.66 -17.88 14 2 C 0.08 1.78 5.49 -17.28 -0.09 1.69 14 3 Si 0.93 17.15 29.57 -169.99 -5.03 12.13 14 4 H -0.27 -4.91 7.11 56.52 0.40 -4.51 14 5 H -0.27 -4.97 7.11 56.52 0.40 -4.57 14 6 H -0.26 -4.67 7.11 56.52 0.40 -4.27 14 7 C -0.44 -10.66 9.44 -38.25 -0.36 -11.02 14 8 H 0.09 1.96 7.86 -52.49 -0.41 1.55 14 9 C 0.35 8.91 7.71 -155.03 -1.19 7.71 14 10 N -0.32 -9.10 10.51 31.21 0.33 -8.77 14 11 N -0.25 -6.42 12.00 32.56 0.39 -6.03 14 12 C 0.07 1.61 7.89 -153.57 -1.21 0.40 14 13 C -0.05 -0.89 5.91 -104.67 -0.62 -1.51 14 14 C 0.12 1.96 11.02 -16.69 -0.18 1.77 14 15 N -0.51 -8.10 10.42 -14.17 -0.15 -8.25 14 16 C 0.25 3.69 12.27 -91.98 -1.13 2.56 14 17 N -0.51 -8.41 10.42 -14.17 -0.15 -8.56 14 18 C 0.15 2.67 11.00 -16.69 -0.18 2.49 14 19 N -0.64 -13.87 6.24 -9.79 -0.06 -13.93 14 20 H 0.41 7.11 8.30 -40.82 -0.34 6.77 14 21 H 0.28 6.53 8.29 -40.82 -0.34 6.19 14 22 H 0.16 2.16 7.39 -52.48 -0.39 1.78 14 23 H 0.19 2.05 8.06 -52.48 -0.42 1.63 14 24 H 0.18 3.01 7.95 -52.49 -0.42 2.59 14 LS Contribution 231.03 15.07 3.48 3.48 Total: -1.00 -29.95 231.03 -6.61 -36.56 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -1.11 Total: 7.15 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -4.98 Total: 4.09 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: 1.03 Total: -63.41 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.13 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.95 -6.61 -36.56 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307075540.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.343 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds