Wall clock time and date at job start Mon Mar 30 2020 02:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86800 * 120.00082 * 2 1 4 4 H 1.48498 * 109.46918 * 274.98107 * 3 2 1 5 5 H 1.48499 * 109.46996 * 34.98050 * 3 2 1 6 6 H 1.48498 * 109.47058 * 154.97777 * 3 2 1 7 7 C 1.40288 * 119.99542 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99832 * 185.99824 * 7 2 1 9 9 C 1.39750 * 120.00123 * 6.00149 * 7 2 1 10 10 N 1.33266 * 126.53496 * 353.90523 * 9 7 2 11 11 N 1.28517 * 109.75100 * 179.88235 * 10 9 7 12 12 C 1.32452 * 110.13841 * 0.39321 * 11 10 9 13 13 C 1.47415 * 126.27886 * 179.79804 * 12 11 10 14 14 C 1.40224 * 120.96797 * 179.68065 * 13 12 11 15 15 N 1.32101 * 118.88770 * 179.69834 * 14 13 12 16 16 C 1.31889 * 120.99680 * 0.60724 * 15 14 13 17 17 N 1.31901 * 122.16317 * 359.66296 * 16 15 14 18 18 C 1.32096 * 120.99335 * 0.02562 * 17 16 15 19 19 N 1.36919 * 107.44243 * 359.76106 * 12 11 10 20 20 H 0.97003 * 127.13189 * 179.97438 * 19 12 11 21 21 H 0.97000 * 120.00194 * 0.02562 * 1 2 3 22 22 H 1.08003 * 120.55348 * 359.97438 * 14 13 12 23 23 H 1.08006 * 118.91998 * 179.68005 * 16 15 14 24 24 H 1.08002 * 120.55307 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1071 -1.3948 5 1 1.4947 2.6200 0.8027 6 1 3.5869 1.4120 0.5922 7 6 2.0080 -1.2150 0.0005 8 1 3.0836 -1.2176 0.0983 9 6 1.3149 -2.4220 -0.1255 10 7 -0.0083 -2.5792 -0.1398 11 7 -0.2963 -3.8246 -0.2730 12 6 0.8134 -4.5442 -0.3439 13 6 0.8955 -6.0083 -0.4942 14 6 2.1362 -6.6581 -0.5642 15 7 2.1618 -7.9725 -0.6930 16 6 1.0447 -8.6696 -0.7675 17 7 -0.1436 -8.0998 -0.7115 18 6 -0.2649 -6.7913 -0.5774 19 7 1.8704 -3.6786 -0.2526 20 1 2.8140 -3.9025 -0.2728 21 1 -0.4850 0.8400 -0.0004 22 1 3.0553 -6.0937 -0.5093 23 1 1.1048 -9.7424 -0.8776 24 1 -1.2414 -6.3322 -0.5319 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307075540.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:03 Heat of formation + Delta-G solvation = 85.806616 kcal Electronic energy + Delta-G solvation = -13318.847647 eV Core-core repulsion = 10846.309095 eV Total energy + Delta-G solvation = -2472.538552 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.066 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.72844 -41.64280 -35.75036 -34.83216 -34.27969 -33.46571 -30.62246 -27.78718 -25.61536 -25.29073 -22.83065 -22.05771 -19.67676 -18.67972 -18.36431 -17.76003 -16.77437 -16.22977 -16.13390 -15.46837 -14.95499 -14.59075 -14.54057 -13.32967 -13.16042 -12.91721 -12.33749 -11.97767 -11.86674 -11.80915 -11.63386 -11.18341 -10.92066 -10.61191 -10.23616 -9.38384 -8.60716 -6.67919 -0.40649 0.00086 1.30277 1.44503 1.61548 1.73201 2.15539 2.40498 2.44762 2.90549 3.15096 3.25267 3.29104 3.47477 3.65383 4.00800 4.45955 4.77877 4.86117 5.14238 5.23132 5.36080 5.39567 5.85167 6.12887 6.21424 6.68860 7.02630 7.06630 8.34519 8.57833 Molecular weight = 217.07amu Principal moments of inertia in cm(-1) A = 0.082019 B = 0.006523 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.300817 B = 4291.641683 C = 4619.984685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.029 3.971 3 Si 1.009 2.991 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.246 1.246 7 C -0.465 4.465 8 H 0.110 0.890 9 C 0.322 3.678 10 N -0.383 5.383 11 N -0.302 5.302 12 C 0.108 3.892 13 C -0.083 4.083 14 C 0.147 3.853 15 N -0.517 5.517 16 C 0.272 3.728 17 N -0.521 5.521 18 C 0.160 3.840 19 N -0.627 5.627 20 H 0.424 0.576 21 H 0.288 0.712 22 H 0.183 0.817 23 H 0.234 0.766 24 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.826 -6.824 -0.910 9.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.193 4.193 3 Si 0.828 3.172 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.169 1.169 7 C -0.505 4.505 8 H 0.128 0.872 9 C 0.079 3.921 10 N -0.233 5.233 11 N -0.147 5.147 12 C -0.155 4.155 13 C -0.091 4.091 14 C -0.022 4.022 15 N -0.230 5.230 16 C -0.015 4.015 17 N -0.234 5.234 18 C -0.008 4.008 19 N -0.249 5.249 20 H 0.264 0.736 21 H 0.099 0.901 22 H 0.200 0.800 23 H 0.250 0.750 24 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.999 -7.345 -0.958 8.936 hybrid contribution 1.666 1.279 0.077 2.101 sum 6.665 -6.066 -0.881 9.055 Atomic orbital electron populations 1.70062 1.09447 1.30613 1.30010 1.27046 0.95665 1.04879 0.91746 0.84797 0.78871 0.74295 0.79285 1.18828 1.19526 1.16937 1.18813 0.95823 0.87622 1.48216 0.87225 1.21904 0.89812 0.85713 0.94685 1.75575 1.10989 1.05882 1.30823 1.74247 1.24872 1.00585 1.14982 1.21845 0.85558 0.91302 1.16802 1.19358 0.97374 0.88825 1.03513 1.23474 0.96732 0.90661 0.91312 1.68421 1.33253 1.07289 1.14032 1.25717 0.82114 1.02583 0.91083 1.68480 1.29478 1.11264 1.14140 1.23363 0.98838 0.88676 0.89954 1.43859 1.09148 1.06343 1.65592 0.73560 0.90094 0.79964 0.75044 0.81182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -41.68 11.96 21.89 0.26 -41.41 14 2 C 0.03 1.41 5.49 85.36 0.47 1.87 14 3 Si 1.01 35.26 29.57 68.60 2.03 37.29 14 4 H -0.26 -8.96 7.11 99.48 0.71 -8.25 14 5 H -0.27 -9.23 7.11 99.48 0.71 -8.52 14 6 H -0.25 -7.93 7.11 99.48 0.71 -7.22 14 7 C -0.47 -23.11 9.44 23.13 0.22 -22.89 14 8 H 0.11 4.74 7.86 -2.91 -0.02 4.72 14 9 C 0.32 17.02 7.71 133.30 1.03 18.05 14 10 N -0.38 -22.58 10.51 -55.18 -0.58 -23.16 14 11 N -0.30 -16.19 12.00 -50.91 -0.61 -16.80 14 12 C 0.11 4.79 7.89 135.95 1.07 5.86 14 13 C -0.08 -2.96 5.91 -19.89 -0.12 -3.08 14 14 C 0.15 4.29 11.02 85.14 0.94 5.23 14 15 N -0.52 -14.14 10.42 -198.74 -2.07 -16.21 14 16 C 0.27 6.84 12.27 180.82 2.22 9.06 14 17 N -0.52 -15.59 10.42 -198.74 -2.07 -17.66 14 18 C 0.16 5.43 11.00 85.14 0.94 6.37 14 19 N -0.63 -27.07 6.24 -184.87 -1.15 -28.23 14 20 H 0.42 14.26 8.30 -92.71 -0.77 13.49 14 21 H 0.29 13.89 8.29 -92.71 -0.77 13.13 14 22 H 0.18 4.30 7.39 -2.91 -0.02 4.28 14 23 H 0.23 3.69 8.06 -2.91 -0.02 3.66 14 24 H 0.17 5.88 7.95 -2.91 -0.02 5.86 14 Total: -1.00 -67.62 231.03 3.06 -64.56 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.49 Total: 21.14 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 6.76 Total: 20.48 kcal Atomic # 7 Polarization: -137.24 SS G_CDS: -6.23 Total: -143.47 kcal Atomic # 14 Polarization: 35.26 SS G_CDS: 2.03 Total: 37.29 kcal Total: -67.62 3.06 -64.56 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307075540.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.372 kcal (2) G-P(sol) polarization free energy of solvation -67.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds