Wall clock time and date at job start Mon Mar 30 2020 02:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86801 * 120.00132 * 2 1 4 4 H 1.48499 * 109.47265 * 270.00273 * 3 2 1 5 5 H 1.48503 * 109.47113 * 29.99584 * 3 2 1 6 6 H 1.48501 * 109.47591 * 149.99848 * 3 2 1 7 7 C 1.40401 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99730 * 175.50174 * 7 2 1 9 9 C 1.40121 * 119.99801 * 355.49413 * 7 2 1 10 10 C 1.39321 * 119.99816 * 132.46805 * 9 7 2 11 11 C 1.41841 * 120.00002 * 355.50093 * 10 9 7 12 12 C 1.40447 * 120.22311 * 328.40737 * 11 10 9 13 13 C 1.37704 * 119.76813 * 179.78820 * 12 11 10 14 14 C 1.38550 * 120.22863 * 0.45933 * 13 12 11 15 15 C 1.38556 * 120.45180 * 359.79052 * 14 13 12 16 16 C 1.37710 * 120.22778 * 359.97438 * 15 14 13 17 17 C 1.47869 * 120.00554 * 312.46721 * 9 7 2 18 18 N 1.34777 * 119.99594 * 352.99855 * 17 9 7 19 19 O 1.21548 * 120.00027 * 173.00124 * 17 9 7 20 20 H 0.97003 * 119.99743 * 5.02082 * 1 2 3 21 21 H 1.07997 * 120.00362 * 175.23396 * 10 9 7 22 22 H 1.08008 * 120.11689 * 0.02562 * 12 11 10 23 23 H 1.08006 * 119.88620 * 180.20891 * 13 12 11 24 24 H 1.07991 * 119.77363 * 179.76558 * 14 13 12 25 25 H 1.08003 * 119.88151 * 179.97438 * 15 14 13 26 26 H 1.07996 * 120.11277 * 180.02562 * 16 15 14 27 27 H 0.96996 * 119.99852 * 5.60916 * 18 17 9 28 28 H 0.96998 * 119.99874 * 185.60086 * 18 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4878 2.0465 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5379 1.4402 0.7001 7 6 2.0083 -1.2159 0.0005 8 1 3.0858 -1.2173 -0.0728 9 6 1.3109 -2.4275 0.0964 10 6 1.6081 -3.4731 -0.7750 11 6 2.5481 -3.2803 -1.8196 12 6 2.6893 -2.0183 -2.4196 13 6 3.6078 -1.8406 -3.4301 14 6 4.3845 -2.9037 -3.8616 15 6 4.2492 -4.1539 -3.2798 16 6 3.3398 -4.3515 -2.2647 17 6 0.2596 -2.5963 1.1224 18 7 0.0680 -1.6417 2.0543 19 8 -0.4317 -3.5961 1.1254 20 1 -0.4850 0.8369 -0.0735 21 1 1.1261 -4.4317 -0.6525 22 1 2.0822 -1.1892 -2.0871 23 1 3.7203 -0.8701 -3.8905 24 1 5.0999 -2.7570 -4.6572 25 1 4.8590 -4.9762 -3.6237 26 1 3.2362 -5.3266 -1.8123 27 1 0.5626 -0.8088 2.0042 28 1 -0.5647 -1.7874 2.7750 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307141210.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:27 Heat of formation + Delta-G solvation = -10.225109 kcal Electronic energy + Delta-G solvation = -14036.282966 eV Core-core repulsion = 11630.827758 eV Total energy + Delta-G solvation = -2405.455208 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.54737 -37.74529 -34.61934 -32.56164 -31.72041 -30.03404 -28.72610 -25.55204 -22.82188 -21.45979 -20.14825 -18.78705 -17.40882 -16.08822 -15.33664 -15.27754 -14.66922 -14.15507 -13.80062 -13.28664 -12.85921 -12.59526 -12.45303 -11.89309 -11.74027 -11.40321 -11.24129 -10.96308 -10.40297 -10.12043 -9.99058 -9.48381 -8.68987 -8.57448 -8.34896 -7.99780 -7.05160 -6.87635 -4.55553 1.82997 2.40190 2.86144 2.96773 3.00966 3.22151 3.77040 4.28739 4.74669 5.00661 5.23087 5.72000 5.81007 5.93276 6.31538 6.41889 6.58550 6.65793 6.94714 6.96692 7.18131 7.23630 7.42399 7.54074 7.69422 7.84685 8.01277 8.06071 8.22560 8.36633 8.64098 8.79954 9.63471 9.98367 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.024381 B = 0.012980 C = 0.008913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.178021 B = 2156.575127 C = 3140.648957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.060 3.940 3 Si 0.906 3.094 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.455 4.455 8 H 0.092 0.908 9 C 0.060 3.940 10 C -0.264 4.264 11 C 0.031 3.969 12 C -0.118 4.118 13 C -0.128 4.128 14 C -0.171 4.171 15 C -0.122 4.122 16 C -0.160 4.160 17 C 0.569 3.431 18 N -0.834 5.834 19 O -0.589 6.589 20 H 0.287 0.713 21 H 0.098 0.902 22 H 0.145 0.855 23 H 0.104 0.896 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.404 0.596 28 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.588 2.360 -0.879 5.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.156 4.156 3 Si 0.730 3.270 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.486 4.486 8 H 0.110 0.890 9 C 0.055 3.945 10 C -0.287 4.287 11 C 0.031 3.969 12 C -0.135 4.135 13 C -0.146 4.146 14 C -0.189 4.189 15 C -0.140 4.140 16 C -0.178 4.178 17 C 0.358 3.642 18 N -0.396 5.396 19 O -0.472 6.472 20 H 0.098 0.902 21 H 0.116 0.884 22 H 0.163 0.837 23 H 0.122 0.878 24 H 0.119 0.881 25 H 0.121 0.879 26 H 0.126 0.874 27 H 0.236 0.764 28 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 4.048 1.881 -0.936 4.560 hybrid contribution 0.294 1.189 0.174 1.237 sum 4.342 3.070 -0.762 5.371 Atomic orbital electron populations 1.69640 1.07137 1.30260 1.36154 1.26026 0.94961 1.01071 0.93495 0.86286 0.80466 0.80316 0.79923 1.18999 1.20035 1.18260 1.19416 0.95500 0.89548 1.44129 0.89024 1.19193 0.90113 0.94165 0.91016 1.20834 1.08403 1.00438 0.98993 1.17974 0.93022 0.92372 0.93515 1.22030 0.97876 0.98952 0.94680 1.20966 0.97794 0.97776 0.98084 1.20867 1.02326 0.93692 1.02025 1.20751 0.99179 0.96504 0.97590 1.21319 0.98125 0.98838 0.99535 1.19302 0.82683 0.81057 0.81170 1.43725 1.46016 1.20839 1.28998 1.90613 1.49310 1.31659 1.75572 0.90208 0.88391 0.83716 0.87788 0.88098 0.87915 0.87445 0.76386 0.79517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -18.45 10.90 55.57 0.61 -17.84 15 2 C 0.06 1.32 3.63 -17.25 -0.06 1.26 15 3 Si 0.91 16.78 29.57 -169.99 -5.03 11.76 15 4 H -0.27 -5.00 7.11 56.52 0.40 -4.60 15 5 H -0.28 -4.98 7.11 56.52 0.40 -4.58 15 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 7 C -0.45 -10.67 4.99 -38.06 -0.19 -10.86 15 8 H 0.09 2.16 7.31 -52.48 -0.38 1.78 15 9 C 0.06 1.50 5.34 -104.85 -0.56 0.94 15 10 C -0.26 -6.57 9.29 -37.80 -0.35 -6.92 15 11 C 0.03 0.72 5.43 -106.86 -0.58 0.14 15 12 C -0.12 -2.60 8.05 -38.95 -0.31 -2.92 15 13 C -0.13 -2.49 10.02 -39.66 -0.40 -2.89 15 14 C -0.17 -3.08 10.05 -39.35 -0.40 -3.47 15 15 C -0.12 -2.23 10.02 -39.66 -0.40 -2.63 15 16 C -0.16 -3.26 9.79 -38.95 -0.38 -3.64 15 17 C 0.57 14.33 7.27 -12.32 -0.09 14.24 15 18 N -0.83 -17.55 7.92 30.53 0.24 -17.31 15 19 O -0.59 -16.37 17.20 5.32 0.09 -16.28 15 20 H 0.29 6.07 8.30 -40.82 -0.34 5.73 15 21 H 0.10 2.49 7.67 -52.49 -0.40 2.09 15 22 H 0.15 3.40 5.37 -52.48 -0.28 3.11 15 23 H 0.10 1.78 8.06 -52.48 -0.42 1.36 15 24 H 0.10 1.53 8.06 -52.49 -0.42 1.11 15 25 H 0.10 1.57 8.06 -52.48 -0.42 1.15 15 26 H 0.11 2.02 8.06 -52.49 -0.42 1.60 15 27 H 0.40 8.22 5.87 -40.82 -0.24 7.98 15 28 H 0.38 6.93 8.93 -40.82 -0.36 6.56 15 LS Contribution 246.46 15.07 3.71 3.71 Total: -1.00 -27.22 246.46 -6.59 -33.81 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -2.50 Total: 18.89 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -3.72 Total: -16.75 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.85 Total: -35.15 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.09 Total: -16.28 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.76 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.22 -6.59 -33.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307141210.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.588 kcal (2) G-P(sol) polarization free energy of solvation -27.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds