Wall clock time and date at job start Mon Mar 30 2020 02:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86801 * 120.00132 * 2 1 4 4 H 1.48499 * 109.47265 * 270.00273 * 3 2 1 5 5 H 1.48503 * 109.47113 * 29.99584 * 3 2 1 6 6 H 1.48501 * 109.47591 * 149.99848 * 3 2 1 7 7 C 1.40401 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99730 * 175.50174 * 7 2 1 9 9 C 1.40121 * 119.99801 * 355.49413 * 7 2 1 10 10 C 1.39321 * 119.99816 * 132.46805 * 9 7 2 11 11 C 1.41841 * 120.00002 * 355.50093 * 10 9 7 12 12 C 1.40447 * 120.22311 * 328.40737 * 11 10 9 13 13 C 1.37704 * 119.76813 * 179.78820 * 12 11 10 14 14 C 1.38550 * 120.22863 * 0.45933 * 13 12 11 15 15 C 1.38556 * 120.45180 * 359.79052 * 14 13 12 16 16 C 1.37710 * 120.22778 * 359.97438 * 15 14 13 17 17 C 1.47869 * 120.00554 * 312.46721 * 9 7 2 18 18 N 1.34777 * 119.99594 * 352.99855 * 17 9 7 19 19 O 1.21548 * 120.00027 * 173.00124 * 17 9 7 20 20 H 0.97003 * 119.99743 * 5.02082 * 1 2 3 21 21 H 1.07997 * 120.00362 * 175.23396 * 10 9 7 22 22 H 1.08008 * 120.11689 * 0.02562 * 12 11 10 23 23 H 1.08006 * 119.88620 * 180.20891 * 13 12 11 24 24 H 1.07991 * 119.77363 * 179.76558 * 14 13 12 25 25 H 1.08003 * 119.88151 * 179.97438 * 15 14 13 26 26 H 1.07996 * 120.11277 * 180.02562 * 16 15 14 27 27 H 0.96996 * 119.99852 * 5.60916 * 18 17 9 28 28 H 0.96998 * 119.99874 * 185.60086 * 18 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4878 2.0465 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5379 1.4402 0.7001 7 6 2.0083 -1.2159 0.0005 8 1 3.0858 -1.2173 -0.0728 9 6 1.3109 -2.4275 0.0964 10 6 1.6081 -3.4731 -0.7750 11 6 2.5481 -3.2803 -1.8196 12 6 2.6893 -2.0183 -2.4196 13 6 3.6078 -1.8406 -3.4301 14 6 4.3845 -2.9037 -3.8616 15 6 4.2492 -4.1539 -3.2798 16 6 3.3398 -4.3515 -2.2647 17 6 0.2596 -2.5963 1.1224 18 7 0.0680 -1.6417 2.0543 19 8 -0.4317 -3.5961 1.1254 20 1 -0.4850 0.8369 -0.0735 21 1 1.1261 -4.4317 -0.6525 22 1 2.0822 -1.1892 -2.0871 23 1 3.7203 -0.8701 -3.8905 24 1 5.0999 -2.7570 -4.6572 25 1 4.8590 -4.9762 -3.6237 26 1 3.2362 -5.3266 -1.8123 27 1 0.5626 -0.8088 2.0042 28 1 -0.5647 -1.7874 2.7750 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307141210.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:27 Heat of formation + Delta-G solvation = -27.394896 kcal Electronic energy + Delta-G solvation = -14037.027504 eV Core-core repulsion = 11630.827758 eV Total energy + Delta-G solvation = -2406.199746 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.36468 -39.45844 -36.43033 -34.29638 -33.55516 -31.59287 -30.40507 -27.31798 -24.58484 -23.02263 -21.87015 -20.56296 -19.22585 -17.83580 -17.05945 -16.91442 -16.37093 -15.77151 -15.46051 -15.17409 -14.66041 -14.21967 -14.03003 -13.52712 -13.37546 -13.09731 -12.83941 -12.54508 -11.94330 -11.72884 -11.60120 -11.21146 -10.62493 -10.36243 -10.15023 -9.54636 -8.77701 -8.60439 -6.35144 0.13319 0.84380 1.33487 1.45918 1.53080 1.57715 2.21915 2.49172 3.06275 3.21228 3.46736 4.30777 4.36584 4.49541 4.63734 4.80456 4.93717 5.04662 5.23065 5.27329 5.50696 5.61709 5.81035 5.89087 6.04228 6.12234 6.25110 6.38443 6.49690 6.59267 6.84439 6.97009 7.76218 8.30106 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.024381 B = 0.012980 C = 0.008913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.178021 B = 2156.575127 C = 3140.648957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.036 3.964 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.264 1.264 6 H -0.257 1.257 7 C -0.458 4.458 8 H 0.086 0.914 9 C 0.033 3.967 10 C -0.282 4.282 11 C -0.002 4.002 12 C -0.134 4.134 13 C -0.131 4.131 14 C -0.157 4.157 15 C -0.119 4.119 16 C -0.167 4.167 17 C 0.559 3.441 18 N -0.813 5.813 19 O -0.627 6.627 20 H 0.295 0.705 21 H 0.076 0.924 22 H 0.125 0.875 23 H 0.129 0.871 24 H 0.141 0.859 25 H 0.140 0.860 26 H 0.114 0.886 27 H 0.410 0.590 28 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.493 3.704 -2.069 7.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.178 4.178 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.188 1.188 6 H -0.181 1.181 7 C -0.489 4.489 8 H 0.103 0.897 9 C 0.028 3.972 10 C -0.305 4.305 11 C -0.002 4.002 12 C -0.153 4.153 13 C -0.149 4.149 14 C -0.175 4.175 15 C -0.137 4.137 16 C -0.185 4.185 17 C 0.348 3.652 18 N -0.374 5.374 19 O -0.513 6.513 20 H 0.106 0.894 21 H 0.094 0.906 22 H 0.143 0.857 23 H 0.147 0.853 24 H 0.159 0.841 25 H 0.158 0.842 26 H 0.132 0.868 27 H 0.243 0.757 28 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.947 3.240 -2.100 7.091 hybrid contribution -0.258 0.731 0.462 0.902 sum 5.690 3.971 -1.637 7.129 Atomic orbital electron populations 1.69692 1.08467 1.31622 1.35967 1.26659 0.95443 1.03451 0.92197 0.85294 0.79263 0.76338 0.79740 1.19112 1.18772 1.18072 1.19330 0.95018 0.89677 1.44847 0.89657 1.19442 0.90896 0.95330 0.91527 1.20908 1.09709 0.99701 1.00171 1.18057 0.94127 0.93899 0.94082 1.21904 0.99029 0.98091 0.96229 1.21270 0.96888 0.99619 0.97130 1.21354 1.01583 0.92787 1.01814 1.21175 0.98310 0.97991 0.96198 1.21525 0.98318 0.98456 1.00237 1.19552 0.82593 0.81145 0.81884 1.43492 1.45639 1.20010 1.28300 1.90572 1.50724 1.33213 1.76759 0.89382 0.90611 0.85746 0.85300 0.84083 0.84177 0.86829 0.75716 0.77894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -37.94 10.90 21.91 0.24 -37.70 15 2 C 0.04 1.58 3.63 85.40 0.31 1.89 15 3 Si 0.97 33.36 29.57 68.60 2.03 35.39 15 4 H -0.27 -9.18 7.11 99.48 0.71 -8.48 15 5 H -0.26 -8.50 7.11 99.48 0.71 -7.79 15 6 H -0.26 -8.71 7.11 99.48 0.71 -8.00 15 7 C -0.46 -21.85 4.99 23.25 0.12 -21.73 15 8 H 0.09 4.10 7.31 -2.91 -0.02 4.07 15 9 C 0.03 1.71 5.34 -20.01 -0.11 1.60 15 10 C -0.28 -14.78 9.29 23.42 0.22 -14.57 15 11 C 0.00 -0.07 5.43 -21.31 -0.12 -0.19 15 12 C -0.13 -5.95 8.05 22.68 0.18 -5.77 15 13 C -0.13 -4.76 10.02 22.22 0.22 -4.54 15 14 C -0.16 -5.02 10.05 22.42 0.23 -4.80 15 15 C -0.12 -3.94 10.02 22.22 0.22 -3.72 15 16 C -0.17 -6.69 9.79 22.68 0.22 -6.47 15 17 C 0.56 29.15 7.27 86.79 0.63 29.78 15 18 N -0.81 -34.56 7.92 -175.59 -1.39 -35.95 15 19 O -0.63 -36.35 17.20 -3.87 -0.07 -36.42 15 20 H 0.30 12.26 8.30 -92.71 -0.77 11.49 15 21 H 0.08 4.14 7.67 -2.91 -0.02 4.12 15 22 H 0.12 5.94 5.37 -2.91 -0.02 5.93 15 23 H 0.13 3.97 8.06 -2.91 -0.02 3.95 15 24 H 0.14 3.42 8.06 -2.92 -0.02 3.40 15 25 H 0.14 3.60 8.06 -2.91 -0.02 3.57 15 26 H 0.11 4.28 8.06 -2.91 -0.02 4.25 15 27 H 0.41 16.61 5.87 -92.71 -0.54 16.06 15 28 H 0.39 14.37 8.93 -92.71 -0.83 13.54 15 Total: -1.00 -59.82 246.46 2.77 -57.06 By element: Atomic # 1 Polarization: 46.29 SS G_CDS: -0.17 Total: 46.12 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 2.13 Total: -28.50 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -1.15 Total: -73.65 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -0.07 Total: -36.42 kcal Atomic # 14 Polarization: 33.36 SS G_CDS: 2.03 Total: 35.39 kcal Total: -59.82 2.77 -57.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307141210.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.665 kcal (2) G-P(sol) polarization free energy of solvation -59.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds