Wall clock time and date at job start Mon Mar 30 2020 03:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47334 * 342.90633 * 3 2 1 5 5 C 1.50700 * 109.47163 * 180.02562 * 4 3 2 6 6 C 1.38357 * 119.97155 * 265.23098 * 5 4 3 7 7 C 1.38779 * 120.58753 * 180.28178 * 6 5 4 8 8 C 1.36527 * 120.53995 * 359.74076 * 7 6 5 9 9 C 1.40691 * 119.92709 * 0.02562 * 8 7 6 10 10 C 1.41152 * 120.28772 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00124 * 204.67017 * 10 9 8 12 12 C 1.39935 * 119.99778 * 24.67555 * 10 9 8 13 13 N 1.30870 * 120.00318 * 17.72925 * 12 10 9 14 14 Si 1.86803 * 119.99841 * 197.72408 * 12 10 9 15 15 H 1.48506 * 109.47016 * 90.00333 * 14 12 10 16 16 H 1.48495 * 109.47263 * 210.00038 * 14 12 10 17 17 H 1.48495 * 109.47367 * 330.00073 * 14 12 10 18 18 C 1.38398 * 119.97752 * 84.99907 * 5 4 3 19 19 O 1.35641 * 120.26244 * 0.02562 * 18 5 4 20 20 H 1.09005 * 109.46616 * 222.90566 * 3 2 1 21 21 H 1.08998 * 109.47016 * 102.90943 * 3 2 1 22 22 H 1.08997 * 109.46977 * 60.00291 * 4 3 2 23 23 H 1.08998 * 109.47322 * 300.00123 * 4 3 2 24 24 H 1.07995 * 119.70867 * 0.02562 * 6 5 4 25 25 H 1.07997 * 119.72840 * 179.72652 * 7 6 5 26 26 H 1.08003 * 120.03552 * 180.02562 * 8 7 6 27 27 H 0.97002 * 119.99689 * 180.02562 * 13 12 10 28 28 H 0.96701 * 114.00142 * 269.71423 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.3778 0.4240 5 6 4.6256 -1.3769 0.4246 6 6 5.3175 -1.8227 -0.6876 7 6 6.7052 -1.8328 -0.6987 8 6 7.4109 -1.3980 0.3862 9 6 6.7299 -0.9355 1.5271 10 6 7.4518 -0.4847 2.6531 11 1 6.9963 -0.5093 3.6320 12 6 8.7579 -0.0059 2.5011 13 7 9.1902 0.3521 1.3188 14 14 9.8844 0.1225 3.9857 15 1 10.6347 -1.1486 4.1492 16 1 10.8416 1.2400 3.7857 17 1 9.0725 0.3781 5.2025 18 6 5.3164 -0.9257 1.5357 19 8 4.6425 -0.4839 2.6267 20 1 2.9709 0.7536 0.6997 21 1 2.9712 0.2304 -1.0017 22 1 2.7557 -2.1307 -0.2757 23 1 2.7554 -1.6076 1.4257 24 1 4.7729 -2.1696 -1.5532 25 1 7.2312 -2.1878 -1.5726 26 1 8.4907 -1.4091 0.3685 27 1 10.0957 0.6837 1.2135 28 1 4.4501 0.4637 2.6132 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307175414.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:55 Heat of formation + Delta-G solvation = -32.465939 kcal Electronic energy + Delta-G solvation = -13656.851881 eV Core-core repulsion = 11250.432238 eV Total energy + Delta-G solvation = -2406.419643 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.18838 -37.81626 -36.90935 -35.87139 -34.21071 -31.13942 -29.89403 -27.02488 -25.27706 -22.54350 -21.73728 -18.84074 -18.60057 -18.23423 -17.14016 -16.34430 -15.96124 -15.49865 -15.38250 -14.71610 -14.40448 -14.23649 -13.54717 -13.47159 -13.19087 -13.02284 -12.83994 -12.60938 -12.40060 -12.10789 -12.00223 -11.74685 -11.36629 -10.99618 -10.65140 -9.22139 -8.99347 -8.59180 -6.26661 0.98112 1.04548 1.40703 1.52269 1.54167 1.83560 1.85394 2.22937 2.74990 3.12316 3.64010 4.08235 4.28719 4.36400 4.41936 4.66175 4.82667 4.97536 5.01248 5.17875 5.26683 5.38796 5.55742 5.72266 6.00512 6.14736 6.25779 6.41329 6.62881 6.67345 6.95338 6.98017 7.51623 8.34350 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.043182 B = 0.007491 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.268249 B = 3736.784794 C = 4162.056093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.244 3.756 3 C -0.012 4.012 4 C -0.056 4.056 5 C -0.078 4.078 6 C -0.215 4.215 7 C -0.115 4.115 8 C -0.181 4.181 9 C 0.057 3.943 10 C -0.487 4.487 11 H 0.072 0.928 12 C 0.038 3.962 13 N -0.821 5.821 14 Si 0.975 3.025 15 H -0.266 1.266 16 H -0.267 1.267 17 H -0.262 1.262 18 C -0.026 4.026 19 O -0.499 6.499 20 H 0.119 0.881 21 H 0.131 0.869 22 H 0.084 0.916 23 H 0.069 0.931 24 H 0.128 0.872 25 H 0.110 0.890 26 H 0.098 0.902 27 H 0.287 0.713 28 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.786 0.512 -2.056 3.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.072 4.072 3 C -0.052 4.052 4 C -0.094 4.094 5 C -0.078 4.078 6 C -0.234 4.234 7 C -0.133 4.133 8 C -0.201 4.201 9 C 0.054 3.946 10 C -0.516 4.516 11 H 0.090 0.910 12 C -0.177 4.177 13 N -0.447 5.447 14 Si 0.797 3.203 15 H -0.191 1.191 16 H -0.192 1.192 17 H -0.186 1.186 18 C -0.072 4.072 19 O -0.308 6.308 20 H 0.137 0.863 21 H 0.148 0.852 22 H 0.103 0.897 23 H 0.088 0.912 24 H 0.146 0.854 25 H 0.128 0.872 26 H 0.116 0.884 27 H 0.098 0.902 28 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.266 0.039 -2.004 4.713 hybrid contribution 1.284 0.620 0.502 1.512 sum -2.981 0.659 -1.502 3.402 Atomic orbital electron populations 1.81206 1.14621 1.10703 1.11412 1.29625 0.95434 0.91217 0.90971 1.19367 0.79131 0.99851 1.06848 1.20215 0.90590 0.96026 1.02604 1.19694 0.94806 1.00666 0.92671 1.20570 0.93267 1.10859 0.98730 1.20734 0.95002 1.00047 0.97525 1.20960 0.99235 1.04386 0.95515 1.18273 0.91950 0.90761 0.93579 1.19633 0.98491 1.38179 0.95293 0.91011 1.26654 0.99399 0.91943 0.99702 1.69876 1.18567 1.30442 1.25783 0.85305 0.77759 0.78789 0.78497 1.19104 1.19187 1.18560 1.18481 0.89344 1.10546 0.88789 1.84661 1.76066 1.28440 1.41587 0.86307 0.85155 0.89715 0.91197 0.85416 0.87228 0.88421 0.90196 0.77224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -15.33 18.54 20.00 0.37 -14.96 15 2 C 0.24 6.07 15.43 89.44 1.38 7.45 15 3 C -0.01 -0.26 5.68 28.79 0.16 -0.09 15 4 C -0.06 -1.49 5.02 29.85 0.15 -1.34 15 5 C -0.08 -2.82 5.14 -19.80 -0.10 -2.93 15 6 C -0.22 -7.86 9.68 22.43 0.22 -7.64 15 7 C -0.11 -4.80 9.97 22.00 0.22 -4.58 15 8 C -0.18 -8.96 8.64 22.47 0.19 -8.77 15 9 C 0.06 2.90 5.58 -21.20 -0.12 2.78 15 10 C -0.49 -25.38 8.72 23.40 0.20 -25.18 15 11 H 0.07 3.76 7.65 -2.91 -0.02 3.74 15 12 C 0.04 1.86 5.14 85.25 0.44 2.30 15 13 N -0.82 -41.06 10.96 21.83 0.24 -40.82 15 14 Si 0.97 37.54 29.60 68.60 2.03 39.57 15 15 H -0.27 -10.09 7.11 99.48 0.71 -9.38 15 16 H -0.27 -9.71 7.11 99.48 0.71 -9.00 15 17 H -0.26 -9.97 7.11 99.48 0.71 -9.26 15 18 C -0.03 -1.15 6.71 23.07 0.15 -0.99 15 19 O -0.50 -19.89 11.94 -89.55 -1.07 -20.96 15 20 H 0.12 2.31 8.14 -2.38 -0.02 2.29 15 21 H 0.13 2.29 8.14 -2.39 -0.02 2.27 15 22 H 0.08 2.00 8.05 -2.39 -0.02 1.99 15 23 H 0.07 2.00 7.69 -2.39 -0.02 1.99 15 24 H 0.13 3.76 8.06 -2.91 -0.02 3.74 15 25 H 0.11 4.03 8.06 -2.91 -0.02 4.00 15 26 H 0.10 5.14 6.16 -2.91 -0.02 5.12 15 27 H 0.29 13.04 8.30 -92.71 -0.77 12.27 15 28 H 0.37 11.79 9.06 -74.06 -0.67 11.12 15 Total: -1.00 -60.27 257.39 4.99 -55.28 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.52 Total: 20.89 kcal Atomic # 6 Polarization: -41.89 SS G_CDS: 2.90 Total: -38.99 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.61 Total: -55.78 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -1.07 Total: -20.96 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -60.27 4.99 -55.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307175414.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.813 kcal (2) G-P(sol) polarization free energy of solvation -60.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds