Wall clock time and date at job start Mon Mar 30 2020 02:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30812 * 1 3 3 Si 1.86802 * 120.00017 * 2 1 4 4 H 1.48500 * 109.47285 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47248 * 300.00182 * 3 2 1 6 6 H 1.48504 * 109.46900 * 60.00192 * 3 2 1 7 7 C 1.40009 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00288 * 163.25894 * 7 2 1 9 9 C 1.41028 * 119.99821 * 343.26201 * 7 2 1 10 10 C 1.40888 * 120.17981 * 334.33222 * 9 7 2 11 11 C 1.37592 * 120.41399 * 180.23419 * 10 9 7 12 12 C 1.38647 * 120.42367 * 359.50409 * 11 10 9 13 13 C 1.39475 * 120.26131 * 0.47480 * 12 11 10 14 14 C 1.40250 * 120.50096 * 359.78640 * 13 12 11 15 15 N 1.38370 * 109.82121 * 180.02562 * 14 13 12 16 16 C 1.34425 * 111.58528 * 359.97438 * 15 14 13 17 17 O 1.21343 * 126.28476 * 180.02562 * 16 15 14 18 18 C 1.47584 * 132.99395 * 179.78340 * 13 12 11 19 19 O 1.21362 * 127.67227 * 0.02562 * 18 13 12 20 20 H 0.97008 * 120.00331 * 359.97438 * 1 2 3 21 21 H 1.07996 * 119.79512 * 359.95377 * 10 9 7 22 22 H 1.07999 * 119.78844 * 179.72120 * 11 10 9 23 23 H 1.07999 * 119.87388 * 180.25537 * 12 11 10 24 24 H 0.97001 * 124.20628 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.7021 1.3464 0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8834 2.3964 1.2126 7 6 2.0082 -1.2125 -0.0005 8 1 3.0539 -1.2322 -0.2699 9 6 1.3479 -2.4081 0.3507 10 6 0.2173 -2.3724 1.1906 11 6 -0.4277 -3.5364 1.5402 12 6 0.0204 -4.7583 1.0622 13 6 1.1372 -4.8202 0.2289 14 6 1.8168 -3.6498 -0.1388 15 7 2.8819 -3.9652 -0.9638 16 6 2.9659 -5.2895 -1.1785 17 8 3.7966 -5.8556 -1.8582 18 6 1.8451 -5.9387 -0.4237 19 8 1.5787 -7.1212 -0.3634 20 1 -0.4851 0.8401 0.0004 21 1 -0.1426 -1.4259 1.5660 22 1 -1.2908 -3.4977 2.1883 23 1 -0.4951 -5.6660 1.3389 24 1 3.4921 -3.3119 -1.3404 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307670195.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:34 Heat of formation + Delta-G solvation = -36.286228 kcal Electronic energy + Delta-G solvation = -13662.897779 eV Core-core repulsion = 11120.479381 eV Total energy + Delta-G solvation = -2542.418398 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.053 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.82314 -37.73346 -37.53316 -35.11071 -33.83090 -30.40159 -28.75452 -25.86508 -25.49635 -21.31759 -20.92051 -19.82292 -17.69657 -16.97768 -16.23527 -15.46223 -15.37872 -15.01644 -14.73901 -13.51299 -13.31771 -13.12793 -13.11073 -12.18362 -11.86583 -11.49666 -11.43437 -11.25692 -10.73935 -10.64604 -10.03288 -9.97083 -9.51202 -8.82432 -7.94702 -7.37881 -7.05236 -4.66313 0.82776 2.34404 2.83567 2.90735 2.92462 2.96682 3.48883 3.63814 3.70362 4.29539 4.42582 5.18314 5.28997 5.81243 6.08568 6.31972 6.40048 6.76640 6.82137 7.01525 7.11740 7.18347 7.51908 7.60224 7.67553 7.85171 8.14776 8.36982 8.46837 8.51978 9.85751 Molecular weight = 217.05amu Principal moments of inertia in cm(-1) A = 0.037401 B = 0.009939 C = 0.008027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.454284 B = 2816.420976 C = 3487.416265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.077 3.923 3 Si 0.913 3.087 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.463 4.463 8 H 0.081 0.919 9 C 0.102 3.898 10 C -0.100 4.100 11 C -0.132 4.132 12 C -0.120 4.120 13 C -0.210 4.210 14 C 0.051 3.949 15 N -0.621 5.621 16 C 0.480 3.520 17 O -0.499 6.499 18 C 0.390 3.610 19 O -0.408 6.408 20 H 0.286 0.714 21 H 0.133 0.867 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.122 1.726 2.024 2.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.491 4.491 8 H 0.099 0.901 9 C 0.098 3.902 10 C -0.120 4.120 11 C -0.151 4.151 12 C -0.141 4.141 13 C -0.214 4.214 14 C -0.045 4.045 15 N -0.266 5.266 16 C 0.263 3.737 17 O -0.375 6.375 18 C 0.264 3.736 19 O -0.280 6.280 20 H 0.097 0.903 21 H 0.151 0.849 22 H 0.125 0.875 23 H 0.125 0.875 24 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 0.193 0.839 1.681 1.889 hybrid contribution 0.573 1.307 -0.254 1.449 sum 0.766 2.146 1.427 2.689 Atomic orbital electron populations 1.69747 1.07609 1.29924 1.33969 1.25889 0.94814 1.01551 0.91935 0.86171 0.80910 0.80410 0.78856 1.18270 1.19779 1.19431 1.19409 0.97806 0.90887 1.41048 0.90098 1.16972 0.92761 0.89159 0.91340 1.21457 0.96249 0.97675 0.96602 1.20734 1.00248 0.92441 1.01653 1.20109 0.96285 0.97273 1.00386 1.20013 1.01509 0.92748 1.07123 1.18375 0.92064 0.95103 0.98975 1.42708 1.29563 1.07587 1.46738 1.20991 0.86692 0.83566 0.82412 1.90730 1.39158 1.68800 1.38810 1.22666 0.83969 0.88229 0.78767 1.90479 1.65730 1.18124 1.53693 0.90275 0.84912 0.87499 0.87534 0.74601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -17.60 10.96 55.55 0.61 -17.00 14 2 C 0.08 1.68 5.15 -17.32 -0.09 1.59 14 3 Si 0.91 16.41 29.59 -169.99 -5.03 11.38 14 4 H -0.26 -4.66 7.11 56.52 0.40 -4.26 14 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 14 6 H -0.27 -4.80 7.11 56.52 0.40 -4.39 14 7 C -0.46 -10.42 9.01 -37.86 -0.34 -10.76 14 8 H 0.08 1.73 7.82 -52.49 -0.41 1.32 14 9 C 0.10 2.32 5.58 -106.61 -0.59 1.72 14 10 C -0.10 -2.17 8.66 -38.82 -0.34 -2.51 14 11 C -0.13 -2.59 10.01 -39.67 -0.40 -2.99 14 12 C -0.12 -2.41 10.10 -38.97 -0.39 -2.80 14 13 C -0.21 -4.47 6.33 -104.87 -0.66 -5.14 14 14 C 0.05 1.10 6.91 -82.93 -0.57 0.53 14 15 N -0.62 -12.28 5.85 -9.59 -0.06 -12.34 14 16 C 0.48 10.03 8.63 -11.52 -0.10 9.93 14 17 O -0.50 -11.23 18.03 5.50 0.10 -11.13 14 18 C 0.39 8.31 7.98 -30.88 -0.25 8.06 14 19 O -0.41 -9.09 18.03 5.49 0.10 -8.99 14 20 H 0.29 5.80 8.30 -40.82 -0.34 5.46 14 21 H 0.13 2.94 6.17 -52.49 -0.32 2.62 14 22 H 0.11 1.79 8.06 -52.49 -0.42 1.37 14 23 H 0.11 1.91 8.06 -52.49 -0.42 1.49 14 24 H 0.42 7.31 8.89 -40.82 -0.36 6.95 14 LS Contribution 229.44 15.07 3.46 3.46 Total: -1.00 -25.33 229.44 -5.63 -30.96 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -1.08 Total: 6.04 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -3.74 Total: -2.37 kcal Atomic # 7 Polarization: -29.89 SS G_CDS: 0.55 Total: -29.33 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.20 Total: -20.13 kcal Atomic # 14 Polarization: 16.41 SS G_CDS: -5.03 Total: 11.38 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -25.33 -5.63 -30.96 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307670195.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.327 kcal (2) G-P(sol) polarization free energy of solvation -25.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds