Wall clock time and date at job start Mon Mar 30 2020 02:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86808 * 119.99838 * 2 1 4 4 H 1.48493 * 109.47287 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47070 * 300.00365 * 3 2 1 6 6 H 1.48504 * 109.46725 * 60.00298 * 3 2 1 7 7 C 1.40395 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00295 * 184.60486 * 7 2 1 9 9 C 1.40131 * 120.00187 * 4.59776 * 7 2 1 10 10 C 1.39310 * 119.99862 * 182.22741 * 9 7 2 11 11 C 1.41848 * 119.99617 * 173.37167 * 10 9 7 12 12 C 1.40438 * 120.22201 * 326.58664 * 11 10 9 13 13 C 1.37706 * 119.76670 * 179.74356 * 12 11 10 14 14 C 1.38553 * 120.22638 * 0.53688 * 13 12 11 15 15 C 1.38550 * 120.45396 * 359.74031 * 14 13 12 16 16 C 1.37707 * 120.22789 * 359.97438 * 15 14 13 17 17 C 1.47858 * 119.99709 * 2.51000 * 9 7 2 18 18 N 1.34780 * 120.00237 * 104.78432 * 17 9 7 19 19 O 1.21554 * 120.00364 * 284.78774 * 17 9 7 20 20 H 0.96999 * 120.00193 * 4.99973 * 1 2 3 21 21 H 1.07994 * 120.00686 * 353.37717 * 10 9 7 22 22 H 1.08005 * 120.11825 * 0.02562 * 12 11 10 23 23 H 1.08006 * 119.89088 * 180.27561 * 13 12 11 24 24 H 1.08002 * 119.77166 * 179.72230 * 14 13 12 25 25 H 1.08002 * 119.88566 * 180.02562 * 15 14 13 26 26 H 1.08000 * 120.11731 * 180.02562 * 16 15 14 27 27 H 0.96996 * 119.99829 * 5.01175 * 18 17 9 28 28 H 0.96997 * 120.00054 * 185.00468 * 18 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.7002 1.3466 -0.0006 5 1 1.8814 2.3965 -1.2124 6 1 1.8814 2.3964 1.2126 7 6 2.0083 -1.2158 -0.0005 8 1 3.0857 -1.2174 0.0745 9 6 1.3111 -2.4275 -0.0984 10 6 2.0037 -3.6353 -0.0522 11 6 1.2905 -4.8606 -0.0094 12 6 0.0575 -4.9379 0.6586 13 6 -0.6295 -6.1309 0.6898 14 6 -0.1031 -7.2553 0.0747 15 6 1.1152 -7.1910 -0.5820 16 6 1.8153 -6.0061 -0.6298 17 6 -0.1590 -2.4238 -0.2569 18 7 -0.7082 -2.6989 -1.4565 19 8 -0.8723 -2.1725 0.6948 20 1 -0.4850 0.8368 -0.0732 21 1 3.0837 -3.6388 -0.0489 22 1 -0.3525 -4.0636 1.1423 23 1 -1.5800 -6.1915 1.1992 24 1 -0.6461 -8.1883 0.1075 25 1 1.5167 -8.0729 -1.0588 26 1 2.7646 -5.9579 -1.1425 27 1 -0.1440 -2.9703 -2.1974 28 1 -1.6676 -2.6257 -1.5790 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383471723.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:29 Heat of formation + Delta-G solvation = -11.441599 kcal Electronic energy + Delta-G solvation = -14107.228057 eV Core-core repulsion = 11701.720098 eV Total energy + Delta-G solvation = -2405.507959 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.69581 -37.33570 -34.27113 -32.61750 -31.88080 -29.87394 -29.18200 -25.25478 -22.77423 -21.28994 -20.56654 -18.65809 -17.41663 -15.89326 -15.78443 -15.35179 -14.65456 -14.06941 -13.95581 -13.19328 -12.80887 -12.47715 -12.08440 -11.80134 -11.62012 -11.28644 -11.23806 -10.95700 -10.53422 -10.04240 -9.90951 -9.78270 -8.70566 -8.40518 -8.30341 -7.97008 -7.23518 -7.12991 -4.55723 2.05678 2.44277 2.79794 2.87492 2.94724 3.46459 3.63123 4.36274 4.66848 4.92909 5.23431 5.78036 5.88419 6.02399 6.35647 6.42066 6.62624 6.64579 6.67693 7.03867 7.25057 7.45958 7.47557 7.53746 7.71029 7.93119 7.96573 8.08124 8.16889 8.48873 8.59689 8.67651 9.69465 9.77685 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.050688 B = 0.008843 C = 0.008039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.264154 B = 3165.558842 C = 3482.250229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.055 3.945 3 Si 0.929 3.071 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.396 4.396 8 H 0.095 0.905 9 C 0.067 3.933 10 C -0.395 4.395 11 C 0.054 3.946 12 C -0.185 4.185 13 C -0.102 4.102 14 C -0.199 4.199 15 C -0.108 4.108 16 C -0.180 4.180 17 C 0.608 3.392 18 N -0.862 5.862 19 O -0.546 6.546 20 H 0.293 0.707 21 H 0.097 0.903 22 H 0.131 0.869 23 H 0.100 0.900 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.390 0.610 28 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.529 -1.811 -3.827 4.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.170 4.170 3 Si 0.752 3.248 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.422 4.422 8 H 0.113 0.887 9 C 0.061 3.939 10 C -0.417 4.417 11 C 0.054 3.946 12 C -0.203 4.203 13 C -0.120 4.120 14 C -0.217 4.217 15 C -0.126 4.126 16 C -0.199 4.199 17 C 0.396 3.604 18 N -0.424 5.424 19 O -0.424 6.424 20 H 0.105 0.895 21 H 0.115 0.885 22 H 0.149 0.851 23 H 0.118 0.882 24 H 0.116 0.884 25 H 0.118 0.882 26 H 0.123 0.877 27 H 0.217 0.783 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.004 -1.425 -3.015 3.335 hybrid contribution 0.186 0.602 -0.481 0.793 sum 0.182 -0.823 -3.495 3.596 Atomic orbital electron populations 1.69614 1.07540 1.30941 1.28353 1.26532 0.95304 1.03084 0.92101 0.85893 0.80765 0.79153 0.79016 1.17761 1.19321 1.19293 1.19848 0.95974 0.89360 1.37044 0.88711 1.19502 0.89902 0.94096 0.90401 1.20058 0.96633 0.89157 1.35867 1.18027 0.92247 0.93580 0.90746 1.22054 0.97144 0.98403 1.02660 1.20839 0.98610 0.93472 0.99071 1.20713 0.97919 0.97754 1.05357 1.20752 0.95378 0.96936 0.99519 1.21202 1.01009 0.93564 1.04080 1.18242 0.88926 0.71303 0.81959 1.43712 1.10539 1.74422 1.13695 1.90599 1.63174 1.48709 1.39888 0.89488 0.88486 0.85124 0.88202 0.88379 0.88224 0.87697 0.78300 0.78671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -18.34 9.69 55.57 0.54 -17.81 15 2 C 0.05 1.28 5.48 -17.25 -0.09 1.19 15 3 Si 0.93 17.26 29.57 -169.99 -5.03 12.23 15 4 H -0.25 -4.62 7.11 56.52 0.40 -4.22 15 5 H -0.27 -4.81 7.11 56.52 0.40 -4.41 15 6 H -0.27 -5.00 7.11 56.52 0.40 -4.60 15 7 C -0.40 -9.85 9.09 -38.06 -0.35 -10.19 15 8 H 0.09 2.23 7.86 -52.49 -0.41 1.82 15 9 C 0.07 1.72 5.52 -104.85 -0.58 1.14 15 10 C -0.40 -9.71 9.42 -37.80 -0.36 -10.07 15 11 C 0.05 1.27 5.41 -106.86 -0.58 0.69 15 12 C -0.18 -4.35 8.28 -38.95 -0.32 -4.68 15 13 C -0.10 -2.12 10.02 -39.66 -0.40 -2.52 15 14 C -0.20 -3.81 10.05 -39.35 -0.40 -4.20 15 15 C -0.11 -2.05 10.02 -39.66 -0.40 -2.44 15 16 C -0.18 -3.76 9.79 -38.94 -0.38 -4.14 15 17 C 0.61 15.15 2.43 -12.32 -0.03 15.12 15 18 N -0.86 -17.69 8.87 30.53 0.27 -17.42 15 19 O -0.55 -15.36 14.72 5.32 0.08 -15.28 15 20 H 0.29 6.56 8.30 -40.82 -0.34 6.22 15 21 H 0.10 2.33 8.06 -52.49 -0.42 1.90 15 22 H 0.13 3.42 4.81 -52.48 -0.25 3.16 15 23 H 0.10 1.88 8.06 -52.48 -0.42 1.46 15 24 H 0.10 1.60 8.06 -52.49 -0.42 1.18 15 25 H 0.10 1.59 8.06 -52.49 -0.42 1.16 15 26 H 0.10 2.01 8.06 -52.49 -0.42 1.58 15 27 H 0.39 7.24 8.82 -40.82 -0.36 6.88 15 28 H 0.38 7.11 8.93 -40.82 -0.36 6.75 15 LS Contribution 248.67 15.07 3.75 3.75 Total: -1.00 -28.84 248.67 -6.91 -35.75 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -2.64 Total: 18.88 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -3.88 Total: -20.10 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.81 Total: -35.22 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.08 Total: -15.28 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.84 -6.91 -35.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383471723.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.305 kcal (2) G-P(sol) polarization free energy of solvation -28.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds