Wall clock time and date at job start Mon Mar 30 2020 02:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39649 * 119.64549 * 303.66147 * 3 2 1 5 5 C 1.38176 * 119.15166 * 180.02562 * 4 3 2 6 6 C 1.39542 * 118.44316 * 359.97438 * 5 4 3 7 7 N 1.39168 * 120.39442 * 179.97438 * 6 5 4 8 8 C 1.34781 * 120.00041 * 35.02302 * 7 6 5 9 9 O 1.21738 * 119.99704 * 355.33316 * 8 7 6 10 10 C 1.46147 * 120.00102 * 175.05947 * 8 7 6 11 11 H 1.08006 * 120.00344 * 0.27304 * 10 8 7 12 12 C 1.40137 * 120.00054 * 180.27490 * 10 8 7 13 13 N 1.30630 * 119.99787 * 0.02562 * 12 10 8 14 14 Si 1.86806 * 119.99950 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47122 * 90.00071 * 14 12 10 16 16 H 1.48499 * 109.46773 * 209.99950 * 14 12 10 17 17 H 1.48494 * 109.46840 * 329.99829 * 14 12 10 18 18 C 1.39414 * 119.21100 * 0.25847 * 6 5 4 19 19 N 1.31406 * 120.78002 * 359.44753 * 18 6 5 20 20 H 1.08004 * 120.42467 * 359.97438 * 4 3 2 21 21 H 1.08006 * 120.77756 * 179.97438 * 5 4 3 22 22 H 0.97000 * 120.00626 * 215.01329 * 7 6 5 23 23 H 0.96999 * 120.00141 * 180.02562 * 13 12 10 24 24 H 1.08003 * 119.61117 * 179.72103 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2590 -0.6718 1.0102 5 6 4.6407 -0.6641 1.0006 6 6 5.2945 0.0194 -0.0254 7 7 6.6849 0.0538 -0.0742 8 6 7.3999 -1.0162 0.3262 9 8 6.8345 -1.9798 0.8097 10 6 8.8535 -1.0220 0.1744 11 1 9.3552 -0.1671 -0.2545 12 6 9.5964 -2.1369 0.5855 13 7 8.9896 -3.1711 1.1038 14 14 11.4544 -2.1441 0.3921 15 1 12.0817 -1.5857 1.6169 16 1 11.9252 -3.5373 0.1860 17 1 11.8333 -1.3150 -0.7802 18 6 4.5382 0.6724 -0.9976 19 7 3.2250 0.6405 -0.9618 20 1 2.7204 -1.1905 1.7895 21 1 5.2016 -1.1752 1.7692 22 1 7.1394 0.8478 -0.3966 23 1 9.5039 -3.9427 1.3886 24 1 5.0374 1.2072 -1.7921 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606259450.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:21 Heat of formation + Delta-G solvation = 26.561996 kcal Electronic energy + Delta-G solvation = -13142.323088 eV Core-core repulsion = 10634.922745 eV Total energy + Delta-G solvation = -2507.400343 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.16023 -37.83360 -36.21042 -33.99225 -32.70263 -31.92893 -29.92145 -26.69742 -24.06741 -23.19965 -20.44444 -19.06186 -17.99337 -16.47069 -16.11607 -15.55611 -14.58309 -14.48718 -14.06777 -13.61320 -13.17370 -12.87275 -12.78343 -12.45219 -12.30118 -12.02596 -11.48011 -11.24559 -10.85702 -10.48486 -10.06391 -9.50425 -9.33120 -9.09614 -8.00630 -7.55632 -6.54417 -5.03059 0.96907 1.59293 2.75623 2.96038 3.04730 3.08030 3.10968 3.77860 3.89254 4.11110 4.26751 4.34115 4.92427 5.20702 5.32179 5.46577 5.54378 5.85723 6.27565 6.58082 6.76077 7.10949 7.40711 7.59007 7.62391 7.89171 8.06282 8.65304 8.89609 10.11107 10.34828 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.084455 B = 0.006068 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 331.456081 B = 4613.288552 C = 4873.576006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.287 3.713 3 C 0.116 3.884 4 C -0.090 4.090 5 C -0.099 4.099 6 C 0.177 3.823 7 N -0.686 5.686 8 C 0.537 3.463 9 O -0.557 6.557 10 C -0.533 4.533 11 H 0.076 0.924 12 C 0.086 3.914 13 N -0.754 5.754 14 Si 0.916 3.084 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.262 1.262 18 C 0.050 3.950 19 N -0.430 5.430 20 H 0.138 0.862 21 H 0.164 0.836 22 H 0.401 0.599 23 H 0.275 0.725 24 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.109 5.440 -0.762 5.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.029 4.029 3 C -0.023 4.023 4 C -0.113 4.113 5 C -0.127 4.127 6 C 0.072 3.928 7 N -0.328 5.328 8 C 0.345 3.655 9 O -0.439 6.439 10 C -0.568 4.568 11 H 0.094 0.906 12 C -0.137 4.137 13 N -0.382 5.382 14 Si 0.740 3.260 15 H -0.194 1.194 16 H -0.202 1.202 17 H -0.186 1.186 18 C -0.115 4.115 19 N -0.140 5.140 20 H 0.156 0.844 21 H 0.181 0.819 22 H 0.235 0.765 23 H 0.086 0.914 24 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.581 4.923 -0.978 6.165 hybrid contribution 2.100 -0.095 0.281 2.121 sum -1.480 4.829 -0.696 5.098 Atomic orbital electron populations 1.81177 1.11787 1.09120 1.08309 1.25112 0.91777 0.92987 0.92999 1.16131 0.85583 1.03921 0.96663 1.21863 0.94596 0.97068 0.97818 1.21918 0.93020 0.99363 0.98405 1.19281 0.86672 0.94518 0.92319 1.44234 1.01888 1.19586 1.67122 1.18506 0.88204 0.80145 0.78667 1.90634 1.71347 1.34319 1.47611 1.20856 0.89229 1.03443 1.43265 0.90612 1.25769 1.00707 0.94436 0.92747 1.69955 1.37215 1.03772 1.27250 0.86223 0.81823 0.78405 0.79596 1.19439 1.20177 1.18625 1.22525 0.88152 1.02995 0.97860 1.67274 1.09802 1.15016 1.21923 0.84373 0.81896 0.76491 0.91420 0.82057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.20 18.54 41.84 0.78 -6.42 14 2 C 0.29 4.56 15.53 -22.47 -0.35 4.21 14 3 C 0.12 1.83 6.59 -84.95 -0.56 1.27 14 4 C -0.09 -1.37 9.78 -39.08 -0.38 -1.75 14 5 C -0.10 -1.76 8.78 -39.12 -0.34 -2.11 14 6 C 0.18 3.12 6.32 -83.61 -0.53 2.59 14 7 N -0.69 -12.98 5.31 -11.07 -0.06 -13.04 14 8 C 0.54 13.17 7.59 -13.08 -0.10 13.07 14 9 O -0.56 -15.54 12.47 5.15 0.06 -15.48 14 10 C -0.53 -13.11 9.53 -35.70 -0.34 -13.45 14 11 H 0.08 1.67 7.85 -52.48 -0.41 1.26 14 12 C 0.09 2.12 5.50 -17.35 -0.10 2.03 14 13 N -0.75 -20.27 11.82 55.55 0.66 -19.62 14 14 Si 0.92 17.98 29.56 -169.99 -5.02 12.95 14 15 H -0.27 -5.19 7.11 56.52 0.40 -4.79 14 16 H -0.28 -5.39 7.11 56.52 0.40 -4.99 14 17 H -0.26 -4.98 7.11 56.52 0.40 -4.58 14 18 C 0.05 0.77 11.12 -17.30 -0.19 0.57 14 19 N -0.43 -6.98 10.26 -10.89 -0.11 -7.10 14 20 H 0.14 1.72 8.06 -52.48 -0.42 1.30 14 21 H 0.16 3.29 6.30 -52.48 -0.33 2.96 14 22 H 0.40 6.17 8.80 -40.82 -0.36 5.81 14 23 H 0.27 6.70 8.29 -40.82 -0.34 6.36 14 24 H 0.16 1.98 8.06 -52.48 -0.42 1.55 14 LS Contribution 237.39 15.07 3.58 3.58 Total: -1.00 -29.70 237.39 -4.09 -33.80 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -1.08 Total: 4.89 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -2.89 Total: 6.44 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 1.26 Total: -46.18 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.06 Total: -15.48 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.02 Total: 12.95 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.70 -4.09 -33.80 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606259450.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.359 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds