Wall clock time and date at job start Mon Mar 30 2020 02:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39649 * 119.64549 * 303.66147 * 3 2 1 5 5 C 1.38176 * 119.15166 * 180.02562 * 4 3 2 6 6 C 1.39542 * 118.44316 * 359.97438 * 5 4 3 7 7 N 1.39168 * 120.39442 * 179.97438 * 6 5 4 8 8 C 1.34781 * 120.00041 * 35.02302 * 7 6 5 9 9 O 1.21738 * 119.99704 * 355.33316 * 8 7 6 10 10 C 1.46147 * 120.00102 * 175.05947 * 8 7 6 11 11 H 1.08006 * 120.00344 * 0.27304 * 10 8 7 12 12 C 1.40137 * 120.00054 * 180.27490 * 10 8 7 13 13 N 1.30630 * 119.99787 * 0.02562 * 12 10 8 14 14 Si 1.86806 * 119.99950 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47122 * 90.00071 * 14 12 10 16 16 H 1.48499 * 109.46773 * 209.99950 * 14 12 10 17 17 H 1.48494 * 109.46840 * 329.99829 * 14 12 10 18 18 C 1.39414 * 119.21100 * 0.25847 * 6 5 4 19 19 N 1.31406 * 120.78002 * 359.44753 * 18 6 5 20 20 H 1.08004 * 120.42467 * 359.97438 * 4 3 2 21 21 H 1.08006 * 120.77756 * 179.97438 * 5 4 3 22 22 H 0.97000 * 120.00626 * 215.01329 * 7 6 5 23 23 H 0.96999 * 120.00141 * 180.02562 * 13 12 10 24 24 H 1.08003 * 119.61117 * 179.72103 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2590 -0.6718 1.0102 5 6 4.6407 -0.6641 1.0006 6 6 5.2945 0.0194 -0.0254 7 7 6.6849 0.0538 -0.0742 8 6 7.3999 -1.0162 0.3262 9 8 6.8345 -1.9798 0.8097 10 6 8.8535 -1.0220 0.1744 11 1 9.3552 -0.1671 -0.2545 12 6 9.5964 -2.1369 0.5855 13 7 8.9896 -3.1711 1.1038 14 14 11.4544 -2.1441 0.3921 15 1 12.0817 -1.5857 1.6169 16 1 11.9252 -3.5373 0.1860 17 1 11.8333 -1.3150 -0.7802 18 6 4.5382 0.6724 -0.9976 19 7 3.2250 0.6405 -0.9618 20 1 2.7204 -1.1905 1.7895 21 1 5.2016 -1.1752 1.7692 22 1 7.1394 0.8478 -0.3966 23 1 9.5039 -3.9427 1.3886 24 1 5.0374 1.2072 -1.7921 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606259450.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:20 Heat of formation + Delta-G solvation = 5.808796 kcal Electronic energy + Delta-G solvation = -13143.223015 eV Core-core repulsion = 10634.922745 eV Total energy + Delta-G solvation = -2508.300269 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.059 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.54384 -39.49640 -37.57701 -35.63673 -34.56813 -33.25943 -31.38825 -28.48791 -25.51177 -24.53254 -22.13885 -20.42077 -19.64218 -17.98728 -17.72076 -17.15892 -16.02182 -15.88127 -15.50858 -15.02219 -14.81626 -14.41365 -14.23787 -13.83456 -13.72088 -13.42206 -13.14148 -12.79434 -12.70430 -12.02349 -11.58900 -10.95477 -10.83657 -10.66147 -9.86029 -9.05482 -8.37327 -6.94207 -0.36756 0.28004 1.43300 1.45293 1.46323 1.60674 1.77768 2.21345 2.39531 2.51107 2.81113 2.93992 3.53366 3.73137 3.92098 4.09166 4.16566 4.66712 4.94427 5.23653 5.28546 5.36767 5.75161 6.09188 6.13881 6.29709 6.74986 6.79438 7.24813 8.29638 8.55019 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.084455 B = 0.006068 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 331.456081 B = 4613.288552 C = 4873.576006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.301 3.699 3 C 0.121 3.879 4 C -0.076 4.076 5 C -0.115 4.115 6 C 0.157 3.843 7 N -0.676 5.676 8 C 0.528 3.472 9 O -0.601 6.601 10 C -0.558 4.558 11 H 0.098 0.902 12 C 0.033 3.967 13 N -0.809 5.809 14 Si 0.997 3.003 15 H -0.262 1.262 16 H -0.277 1.277 17 H -0.247 1.247 18 C 0.072 3.928 19 N -0.439 5.439 20 H 0.165 0.835 21 H 0.135 0.865 22 H 0.418 0.582 23 H 0.278 0.722 24 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.626 6.667 -1.684 6.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.015 4.015 3 C -0.017 4.017 4 C -0.099 4.099 5 C -0.143 4.143 6 C 0.053 3.947 7 N -0.320 5.320 8 C 0.335 3.665 9 O -0.486 6.486 10 C -0.593 4.593 11 H 0.116 0.884 12 C -0.184 4.184 13 N -0.438 5.438 14 Si 0.816 3.184 15 H -0.187 1.187 16 H -0.202 1.202 17 H -0.170 1.170 18 C -0.093 4.093 19 N -0.149 5.149 20 H 0.182 0.818 21 H 0.153 0.847 22 H 0.255 0.745 23 H 0.088 0.912 24 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.141 6.209 -1.919 7.218 hybrid contribution 1.805 -0.419 0.565 1.937 sum -1.336 5.790 -1.355 6.094 Atomic orbital electron populations 1.81203 1.12196 1.09563 1.08785 1.24970 0.91521 0.92509 0.92513 1.16184 0.85526 1.03464 0.96504 1.21982 0.93461 0.96332 0.98132 1.21771 0.94110 1.00017 0.98408 1.19466 0.86096 0.95814 0.93315 1.43675 1.02463 1.19041 1.66842 1.18748 0.88866 0.80683 0.78172 1.90605 1.72295 1.36370 1.49331 1.21416 0.89856 1.04477 1.43578 0.88353 1.26927 1.06188 0.93670 0.91636 1.70107 1.39625 1.04909 1.29131 0.85009 0.74793 0.78452 0.80127 1.18694 1.20201 1.17003 1.22923 0.87588 1.01394 0.97410 1.67364 1.10062 1.15354 1.22110 0.81756 0.84713 0.74485 0.91165 0.78592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -14.06 18.54 19.00 0.35 -13.71 14 2 C 0.30 8.94 15.53 88.33 1.37 10.32 14 3 C 0.12 3.58 6.59 40.57 0.27 3.85 14 4 C -0.08 -2.22 9.78 22.60 0.22 -2.00 14 5 C -0.11 -4.10 8.78 22.57 0.20 -3.90 14 6 C 0.16 5.37 6.32 38.58 0.24 5.62 14 7 N -0.68 -25.21 5.31 -307.14 -1.63 -26.84 14 8 C 0.53 26.25 7.59 86.29 0.65 26.91 14 9 O -0.60 -34.68 12.47 -4.47 -0.06 -34.73 14 10 C -0.56 -27.39 9.53 24.79 0.24 -27.15 14 11 H 0.10 4.19 7.85 -2.91 -0.02 4.17 14 12 C 0.03 1.64 5.50 85.33 0.47 2.11 14 13 N -0.81 -44.63 11.82 21.85 0.26 -44.37 14 14 Si 1.00 36.38 29.56 68.60 2.03 38.41 14 15 H -0.26 -9.20 7.11 99.48 0.71 -8.49 14 16 H -0.28 -10.00 7.11 99.48 0.71 -9.29 14 17 H -0.25 -8.31 7.11 99.48 0.71 -7.60 14 18 C 0.07 2.03 11.12 85.04 0.95 2.98 14 19 N -0.44 -13.18 10.26 -188.36 -1.93 -15.11 14 20 H 0.16 3.83 8.06 -2.91 -0.02 3.80 14 21 H 0.14 5.69 6.30 -2.91 -0.02 5.67 14 22 H 0.42 12.26 8.80 -92.71 -0.82 11.44 14 23 H 0.28 13.97 8.29 -92.71 -0.77 13.20 14 24 H 0.20 4.07 8.06 -2.91 -0.02 4.05 14 Total: -1.00 -64.75 237.39 4.07 -60.68 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.45 Total: 16.95 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 4.61 Total: 18.72 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -2.95 Total: -100.03 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -0.06 Total: -34.73 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 2.03 Total: 38.41 kcal Total: -64.75 4.07 -60.68 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606259450.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.489 kcal (2) G-P(sol) polarization free energy of solvation -64.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds