Wall clock time and date at job start Mon Mar 30 2020 02:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.51947 * 127.45653 * 2 1 4 4 C 1.54282 * 103.70484 * 152.39270 * 3 2 1 5 5 N 1.46974 * 105.89339 * 28.45069 * 4 3 2 6 6 S 1.65601 * 125.65367 * 162.00360 * 5 4 3 7 7 O 1.42103 * 106.39776 * 156.17627 * 6 5 4 8 8 O 1.42095 * 106.40144 * 23.25824 * 6 5 4 9 9 C 1.76192 * 107.21798 * 269.71535 * 6 5 4 10 10 H 1.08002 * 120.00306 * 0.02562 * 9 6 5 11 11 C 1.37879 * 120.00344 * 180.02562 * 9 6 5 12 12 N 1.31514 * 119.99350 * 359.97438 * 11 9 6 13 13 Si 1.86798 * 120.00608 * 179.97438 * 11 9 6 14 14 H 1.48490 * 109.47339 * 179.97438 * 13 11 9 15 15 H 1.48493 * 109.47239 * 300.00306 * 13 11 9 16 16 H 1.48504 * 109.46636 * 59.99865 * 13 11 9 17 17 C 1.46745 * 108.68494 * 341.73646 * 5 4 3 18 18 H 1.08004 * 120.00137 * 179.97438 * 1 2 3 19 19 H 1.08005 * 120.00152 * 359.95746 * 1 2 3 20 20 H 1.09001 * 110.56143 * 271.16182 * 3 2 1 21 21 H 1.08998 * 110.55969 * 34.01491 * 3 2 1 22 22 H 1.09000 * 110.28719 * 269.29941 * 4 3 2 23 23 H 1.09000 * 110.09892 * 147.49727 * 4 3 2 24 24 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 25 25 H 1.09007 * 109.74902 * 120.33826 * 17 5 4 26 26 H 1.08993 * 109.75578 * 241.01820 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.2340 1.2062 0.0000 4 6 3.5107 0.6886 0.6946 5 7 3.5643 -0.7534 0.4155 6 16 4.9058 -1.7144 0.5548 7 8 4.4314 -3.0402 0.7461 8 8 5.7747 -1.0603 1.4693 9 6 5.7229 -1.6987 -1.0060 10 1 5.3149 -1.1228 -1.8235 11 6 6.8834 -2.4216 -1.1840 12 7 7.3806 -3.1225 -0.1885 13 14 7.7495 -2.4056 -2.8390 14 1 8.9652 -3.2555 -2.7698 15 1 6.8340 -2.9343 -3.8819 16 1 8.1379 -1.0137 -3.1809 17 6 2.2304 -1.2016 -0.0009 18 1 -0.5400 -0.9353 -0.0004 19 1 -0.5400 0.9353 0.0007 20 1 2.4504 1.5227 -1.0204 21 1 1.7953 2.0245 0.5709 22 1 3.4527 0.8611 1.7693 23 1 4.3892 1.1839 0.2810 24 1 8.1969 -3.6315 -0.3137 25 1 2.2809 -1.6263 -1.0035 26 1 1.8587 -1.9508 0.6980 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688657979.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:30 Heat of formation + Delta-G solvation = -72.716156 kcal Electronic energy + Delta-G solvation = -13031.455849 eV Core-core repulsion = 10622.901683 eV Total energy + Delta-G solvation = -2408.554166 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 217.056 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.11827 -35.23661 -33.96101 -33.10489 -32.27604 -29.31032 -26.12936 -25.61084 -21.95170 -18.77291 -18.55074 -17.38242 -16.23495 -15.49321 -14.96504 -14.25983 -13.87127 -13.80855 -13.35778 -12.80222 -12.56943 -12.06975 -11.82412 -11.29593 -11.19784 -11.16621 -10.63001 -10.60194 -10.32626 -10.29450 -10.19712 -9.23716 -9.05656 -8.88313 -8.12342 -6.69259 -5.31907 2.19495 2.36219 3.08900 3.13035 3.18813 4.06255 4.53956 4.63832 4.72800 5.10224 5.37518 5.47878 5.79980 5.82145 5.93812 6.02383 6.10434 6.13711 6.32674 6.35371 6.60424 6.83368 6.98508 7.33669 7.49481 7.97901 8.88866 10.24339 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.043504 B = 0.010330 C = 0.009670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.459854 B = 2709.861739 C = 2894.938238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.119 4.119 3 C -0.103 4.103 4 C 0.128 3.872 5 N -1.020 6.020 6 S 2.729 3.271 7 O -1.001 7.001 8 O -1.000 7.000 9 C -1.020 5.020 10 H 0.102 0.898 11 C 0.132 3.868 12 N -0.846 5.846 13 Si 0.922 3.078 14 H -0.276 1.276 15 H -0.264 1.264 16 H -0.264 1.264 17 C 0.152 3.848 18 H 0.104 0.896 19 H 0.103 0.897 20 H 0.085 0.915 21 H 0.079 0.921 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.292 0.708 25 H 0.074 0.926 26 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.025 6.704 -2.173 11.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.121 4.121 3 C -0.141 4.141 4 C 0.001 3.999 5 N -0.856 5.856 6 S 2.831 3.169 7 O -0.991 6.991 8 O -0.990 6.990 9 C -1.154 5.154 10 H 0.120 0.880 11 C -0.086 4.086 12 N -0.476 5.476 13 Si 0.746 3.254 14 H -0.201 1.201 15 H -0.189 1.189 16 H -0.189 1.189 17 C 0.026 3.974 18 H 0.122 0.878 19 H 0.121 0.879 20 H 0.103 0.897 21 H 0.097 0.903 22 H 0.077 0.923 23 H 0.092 0.908 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.554 6.067 -1.260 10.563 hybrid contribution 0.547 0.166 -1.502 1.608 sum -8.007 6.232 -2.762 10.516 Atomic orbital electron populations 1.22998 0.93642 1.02062 1.04026 1.22382 0.94583 0.96544 0.98575 1.21685 0.94692 0.96094 1.01646 1.21543 0.97569 0.81505 0.99242 1.59040 1.23212 1.18760 1.84550 1.00129 0.69862 0.70960 0.75958 1.93356 1.81035 1.36690 1.88029 1.93359 1.63603 1.76395 1.65660 1.30586 1.21793 1.41892 1.21113 0.88012 1.24765 0.94667 0.90360 0.98770 1.69890 1.20939 1.24679 1.32088 0.86174 0.78536 0.79138 0.81535 1.20092 1.18867 1.18866 1.20263 0.82251 0.94620 1.00265 0.87824 0.87890 0.89692 0.90252 0.92261 0.90778 0.89795 0.90795 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.20 14.58 29.02 0.42 -1.78 15 2 C -0.12 -1.71 6.14 -100.12 -0.62 -2.32 15 3 C -0.10 -1.39 6.84 -26.60 -0.18 -1.57 15 4 C 0.13 2.22 7.02 -3.11 -0.02 2.20 15 5 N -1.02 -21.68 3.70 -114.02 -0.42 -22.10 15 6 S 2.73 74.48 5.22 -107.50 -0.56 73.92 15 7 O -1.00 -29.83 17.60 -57.17 -1.01 -30.84 15 8 O -1.00 -29.76 17.60 -57.17 -1.01 -30.77 15 9 C -1.02 -28.54 9.75 30.60 0.30 -28.25 15 10 H 0.10 2.61 7.81 -52.49 -0.41 2.20 15 11 C 0.13 3.73 5.46 -17.82 -0.10 3.64 15 12 N -0.85 -25.13 13.19 55.43 0.73 -24.40 15 13 Si 0.92 20.73 29.54 -169.99 -5.02 15.71 15 14 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 15 H -0.26 -5.74 7.11 56.52 0.40 -5.33 15 16 H -0.26 -5.73 7.11 56.52 0.40 -5.32 15 17 C 0.15 2.74 6.81 -4.74 -0.03 2.71 15 18 H 0.10 1.10 8.06 -52.48 -0.42 0.67 15 19 H 0.10 0.98 8.06 -52.48 -0.42 0.56 15 20 H 0.08 1.07 8.14 -51.93 -0.42 0.64 15 21 H 0.08 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 24 H 0.29 7.78 8.31 -40.82 -0.34 7.44 15 25 H 0.07 1.30 8.14 -51.93 -0.42 0.87 15 26 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 LS Contribution 245.86 15.07 3.71 3.71 Total: -1.00 -34.52 245.86 -6.73 -41.25 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -2.93 Total: -1.10 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: -0.23 Total: -25.38 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.31 Total: -46.51 kcal Atomic # 8 Polarization: -59.59 SS G_CDS: -2.01 Total: -61.60 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 74.48 SS G_CDS: -0.56 Total: 73.92 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -34.52 -6.73 -41.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688657979.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.464 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds