Wall clock time and date at job start Mon Mar 30 2020 02:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.51947 * 127.45653 * 2 1 4 4 C 1.54282 * 103.70484 * 152.39270 * 3 2 1 5 5 N 1.46974 * 105.89339 * 28.45069 * 4 3 2 6 6 S 1.65601 * 125.65367 * 162.00360 * 5 4 3 7 7 O 1.42103 * 106.39776 * 156.17627 * 6 5 4 8 8 O 1.42095 * 106.40144 * 23.25824 * 6 5 4 9 9 C 1.76192 * 107.21798 * 269.71535 * 6 5 4 10 10 H 1.08002 * 120.00306 * 0.02562 * 9 6 5 11 11 C 1.37879 * 120.00344 * 180.02562 * 9 6 5 12 12 N 1.31514 * 119.99350 * 359.97438 * 11 9 6 13 13 Si 1.86798 * 120.00608 * 179.97438 * 11 9 6 14 14 H 1.48490 * 109.47339 * 179.97438 * 13 11 9 15 15 H 1.48493 * 109.47239 * 300.00306 * 13 11 9 16 16 H 1.48504 * 109.46636 * 59.99865 * 13 11 9 17 17 C 1.46745 * 108.68494 * 341.73646 * 5 4 3 18 18 H 1.08004 * 120.00137 * 179.97438 * 1 2 3 19 19 H 1.08005 * 120.00152 * 359.95746 * 1 2 3 20 20 H 1.09001 * 110.56143 * 271.16182 * 3 2 1 21 21 H 1.08998 * 110.55969 * 34.01491 * 3 2 1 22 22 H 1.09000 * 110.28719 * 269.29941 * 4 3 2 23 23 H 1.09000 * 110.09892 * 147.49727 * 4 3 2 24 24 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 25 25 H 1.09007 * 109.74902 * 120.33826 * 17 5 4 26 26 H 1.08993 * 109.75578 * 241.01820 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.2340 1.2062 0.0000 4 6 3.5107 0.6886 0.6946 5 7 3.5643 -0.7534 0.4155 6 16 4.9058 -1.7144 0.5548 7 8 4.4314 -3.0402 0.7461 8 8 5.7747 -1.0603 1.4693 9 6 5.7229 -1.6987 -1.0060 10 1 5.3149 -1.1228 -1.8235 11 6 6.8834 -2.4216 -1.1840 12 7 7.3806 -3.1225 -0.1885 13 14 7.7495 -2.4056 -2.8390 14 1 8.9652 -3.2555 -2.7698 15 1 6.8340 -2.9343 -3.8819 16 1 8.1379 -1.0137 -3.1809 17 6 2.2304 -1.2016 -0.0009 18 1 -0.5400 -0.9353 -0.0004 19 1 -0.5400 0.9353 0.0007 20 1 2.4504 1.5227 -1.0204 21 1 1.7953 2.0245 0.5709 22 1 3.4527 0.8611 1.7693 23 1 4.3892 1.1839 0.2810 24 1 8.1969 -3.6315 -0.3137 25 1 2.2809 -1.6263 -1.0035 26 1 1.8587 -1.9508 0.6980 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688657979.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:29 Heat of formation + Delta-G solvation = -99.755381 kcal Electronic energy + Delta-G solvation = -13032.628358 eV Core-core repulsion = 10622.901683 eV Total energy + Delta-G solvation = -2409.726675 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 217.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.43180 -37.48811 -36.21450 -35.22924 -33.55606 -30.59484 -28.30192 -26.90209 -23.33937 -20.80251 -19.76161 -19.23383 -18.27041 -17.16794 -16.71287 -16.14119 -15.72953 -15.07342 -14.71524 -14.35421 -14.01841 -13.86406 -13.38041 -13.10880 -13.01905 -12.63763 -12.58133 -12.49631 -12.33462 -12.12666 -11.59274 -11.26340 -11.05213 -10.07968 -9.71735 -8.77611 -7.53361 0.20055 1.31936 1.34652 1.35065 1.48467 2.18872 2.54269 2.86211 3.47894 3.70841 3.81085 4.20761 4.33003 4.42478 4.61464 4.69237 4.77534 4.92315 5.10192 5.11680 5.17614 5.33361 5.62618 5.70838 5.87005 6.01943 6.73511 8.17775 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.043504 B = 0.010330 C = 0.009670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.459854 B = 2709.861739 C = 2894.938238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.148 4.148 3 C -0.087 4.087 4 C 0.110 3.890 5 N -1.024 6.024 6 S 2.733 3.267 7 O -1.039 7.039 8 O -1.037 7.037 9 C -1.041 5.041 10 H 0.118 0.882 11 C 0.068 3.932 12 N -0.894 5.894 13 Si 0.995 3.005 14 H -0.262 1.262 15 H -0.250 1.250 16 H -0.249 1.249 17 C 0.141 3.859 18 H 0.112 0.888 19 H 0.136 0.864 20 H 0.095 0.905 21 H 0.114 0.886 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.300 0.700 25 H 0.069 0.931 26 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.407 8.242 -3.895 13.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.149 4.149 3 C -0.125 4.125 4 C -0.014 4.014 5 N -0.863 5.863 6 S 2.836 3.164 7 O -1.030 7.030 8 O -1.028 7.028 9 C -1.175 5.175 10 H 0.136 0.864 11 C -0.145 4.145 12 N -0.526 5.526 13 Si 0.813 3.187 14 H -0.186 1.186 15 H -0.174 1.174 16 H -0.173 1.173 17 C 0.016 3.984 18 H 0.131 0.869 19 H 0.153 0.847 20 H 0.113 0.887 21 H 0.132 0.868 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.111 0.889 25 H 0.087 0.913 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.952 7.607 -2.958 12.871 hybrid contribution 0.830 -0.294 -0.903 1.261 sum -9.122 7.313 -3.862 12.313 Atomic orbital electron populations 1.23380 0.92483 1.04031 0.99076 1.22196 0.95068 0.94670 1.02985 1.21625 0.92136 0.96501 1.02244 1.21932 1.00037 0.79254 1.00227 1.58468 1.23018 1.20210 1.84563 0.99543 0.70389 0.70547 0.75872 1.93291 1.81835 1.39349 1.88517 1.93296 1.65653 1.76891 1.66925 1.30914 1.22479 1.42372 1.21689 0.86354 1.26096 0.95445 0.89425 1.03508 1.69987 1.21960 1.25817 1.34807 0.85097 0.77745 0.80214 0.75692 1.18571 1.17391 1.17277 1.20482 0.81532 0.96686 0.99684 0.86936 0.84658 0.88704 0.86799 0.91917 0.91207 0.88949 0.91254 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 14.58 67.79 0.99 -1.90 15 2 C -0.15 -3.83 6.14 -15.87 -0.10 -3.93 15 3 C -0.09 -2.09 6.84 30.68 0.21 -1.88 15 4 C 0.11 3.79 7.02 86.72 0.61 4.40 15 5 N -1.02 -44.16 3.70 -514.64 -1.90 -46.06 15 6 S 2.73 154.44 5.22 -56.49 -0.29 154.14 15 7 O -1.04 -64.71 17.60 -128.00 -2.25 -66.96 15 8 O -1.04 -64.29 17.60 -128.00 -2.25 -66.54 15 9 C -1.04 -59.03 9.75 67.73 0.66 -58.37 15 10 H 0.12 6.07 7.81 -2.91 -0.02 6.04 15 11 C 0.07 3.86 5.46 84.66 0.46 4.32 15 12 N -0.89 -54.35 13.19 21.45 0.28 -54.07 15 13 Si 1.00 41.72 29.54 68.60 2.03 43.75 15 14 H -0.26 -10.25 7.11 99.48 0.71 -9.54 15 15 H -0.25 -9.85 7.11 99.48 0.71 -9.14 15 16 H -0.25 -9.77 7.11 99.48 0.71 -9.06 15 17 C 0.14 5.07 6.81 85.80 0.58 5.66 15 18 H 0.11 1.94 8.06 -2.91 -0.02 1.92 15 19 H 0.14 1.77 8.06 -2.91 -0.02 1.75 15 20 H 0.09 2.08 8.14 -2.39 -0.02 2.06 15 21 H 0.11 1.97 8.14 -2.39 -0.02 1.95 15 22 H 0.06 2.06 8.14 -2.39 -0.02 2.04 15 23 H 0.07 2.39 8.14 -2.39 -0.02 2.37 15 24 H 0.30 16.33 8.31 -92.70 -0.77 15.56 15 25 H 0.07 2.46 8.14 -2.38 -0.02 2.44 15 26 H 0.06 2.21 8.14 -2.39 -0.02 2.19 15 Total: -1.00 -77.06 245.86 0.19 -76.88 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 1.16 Total: 10.57 kcal Atomic # 6 Polarization: -55.12 SS G_CDS: 3.42 Total: -51.70 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -1.62 Total: -100.13 kcal Atomic # 8 Polarization: -129.00 SS G_CDS: -4.50 Total: -133.50 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: 154.44 SS G_CDS: -0.29 Total: 154.14 kcal Total: -77.06 0.19 -76.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688657979.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.880 kcal (2) G-P(sol) polarization free energy of solvation -77.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds