Wall clock time and date at job start Mon Mar 30 2020 02:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 S 1.76209 * 119.99933 * 180.02562 * 7 2 1 10 10 O 1.42100 * 106.39762 * 293.53479 * 9 7 2 11 11 O 1.42094 * 106.40259 * 66.45795 * 9 7 2 12 12 N 1.65601 * 107.21799 * 179.97438 * 9 7 2 13 13 C 1.46505 * 119.99965 * 64.99503 * 12 9 7 14 14 H 1.08998 * 110.34335 * 24.30093 * 13 12 9 15 15 C 1.51097 * 110.38571 * 262.01167 * 13 12 9 16 16 C 1.30526 * 111.10325 * 224.75286 * 15 13 12 17 17 C 1.51104 * 111.10356 * 0.02562 * 16 15 13 18 18 C 1.54632 * 110.38353 * 146.58680 * 13 12 9 19 19 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 20 20 H 0.96992 * 120.00024 * 245.00103 * 12 9 7 21 21 H 1.08003 * 124.45138 * 44.73818 * 15 13 12 22 22 H 1.08006 * 124.44746 * 180.02562 * 16 15 13 23 23 H 1.08998 * 110.38706 * 135.25074 * 17 16 15 24 24 H 1.08999 * 110.38546 * 257.62288 * 17 16 15 25 25 H 1.08995 * 111.04105 * 261.47501 * 18 13 12 26 26 H 1.09004 * 111.03613 * 25.41428 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 16 3.7666 -1.1940 0.0001 10 8 4.1683 -0.6488 -1.2491 11 8 4.1674 -0.6504 1.2503 12 7 4.2569 -2.7758 0.0000 13 6 3.9619 -3.6340 -1.1502 14 1 3.8231 -3.0307 -2.0473 15 6 2.7317 -4.4692 -0.8819 16 6 2.9170 -5.7091 -1.2453 17 6 4.3020 -5.9075 -1.8161 18 6 5.0988 -4.6605 -1.3618 19 1 -0.4850 0.8400 -0.0004 20 1 4.7392 -3.1341 0.7614 21 1 1.8190 -4.0902 -0.4463 22 1 2.1776 -6.4906 -1.1506 23 1 4.7522 -6.8148 -1.4134 24 1 4.2612 -5.9536 -2.9043 25 1 5.7862 -4.3283 -2.1397 26 1 5.6295 -4.8544 -0.4296 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698236945.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:13 Heat of formation + Delta-G solvation = -65.226965 kcal Electronic energy + Delta-G solvation = -13054.601743 eV Core-core repulsion = 10646.372332 eV Total energy + Delta-G solvation = -2408.229411 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 217.056 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.53183 -35.57628 -34.39913 -33.08352 -32.83872 -28.76156 -26.46726 -26.04231 -20.76658 -19.24233 -18.40804 -17.53940 -16.76901 -16.11159 -15.13679 -14.99451 -14.11886 -13.49051 -13.13403 -12.87942 -12.33237 -12.05273 -11.67838 -11.39000 -11.32667 -11.16501 -10.97822 -10.62379 -10.57693 -10.43572 -9.79160 -9.19122 -9.18626 -8.75182 -8.58479 -6.78226 -5.31467 2.08892 2.58251 3.09110 3.19689 3.29170 3.97608 4.37457 4.61487 4.85123 4.88352 5.21825 5.37443 5.56614 5.66847 5.80156 5.89131 6.03817 6.11452 6.22972 6.42101 6.70397 6.80706 7.12235 7.50273 7.79007 8.24476 8.73283 10.33933 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.047321 B = 0.011278 C = 0.009926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.558762 B = 2482.030156 C = 2820.221263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.153 3.847 3 Si 0.801 3.199 4 H -0.247 1.247 5 H -0.256 1.256 6 H -0.219 1.219 7 C -1.014 5.014 8 H 0.123 0.877 9 S 2.673 3.327 10 O -1.011 7.011 11 O -1.013 7.013 12 N -1.115 6.115 13 C 0.174 3.826 14 H 0.105 0.895 15 C -0.158 4.158 16 C -0.182 4.182 17 C -0.097 4.097 18 C -0.128 4.128 19 H 0.280 0.720 20 H 0.405 0.595 21 H 0.135 0.865 22 H 0.122 0.878 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.197 -8.926 -2.484 11.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.066 4.066 3 Si 0.621 3.379 4 H -0.171 1.171 5 H -0.180 1.180 6 H -0.141 1.141 7 C -1.149 5.149 8 H 0.141 0.859 9 S 2.775 3.225 10 O -1.000 7.000 11 O -1.003 7.003 12 N -0.869 5.869 13 C 0.066 3.934 14 H 0.123 0.877 15 C -0.178 4.178 16 C -0.201 4.201 17 C -0.135 4.135 18 C -0.168 4.168 19 H 0.090 0.910 20 H 0.237 0.763 21 H 0.153 0.847 22 H 0.140 0.860 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.541 -8.001 -2.656 10.670 hybrid contribution -0.486 0.256 0.405 0.683 sum 6.055 -7.745 -2.251 10.085 Atomic orbital electron populations 1.69987 1.06580 1.28987 1.39803 1.24427 0.94775 0.98796 0.88613 0.87873 0.83659 0.84582 0.81772 1.17118 1.17966 1.14123 1.30523 1.15615 1.02175 1.66550 0.85879 1.01387 0.77381 0.70514 0.73230 1.93458 1.85069 1.76023 1.45489 1.93414 1.85533 1.76186 1.45181 1.55534 1.73701 1.31135 1.26545 1.20547 0.91922 0.91584 0.89334 0.87713 1.24030 0.99706 0.95455 0.98616 1.23153 0.97951 0.97262 1.01687 1.21347 0.93613 0.98050 1.00493 1.22825 0.97297 0.94633 1.02001 0.90963 0.76319 0.84743 0.86016 0.91447 0.90740 0.90383 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.80 13.96 55.43 0.77 -23.02 15 2 C 0.15 4.40 5.47 -17.82 -0.10 4.30 15 3 Si 0.80 20.70 26.54 -169.99 -4.51 16.19 15 4 H -0.25 -6.27 7.11 56.52 0.40 -5.87 15 5 H -0.26 -6.06 7.11 56.52 0.40 -5.66 15 6 H -0.22 -5.76 5.60 56.52 0.32 -5.44 15 7 C -1.01 -28.09 10.26 30.60 0.31 -27.78 15 8 H 0.12 3.38 6.67 -52.49 -0.35 3.03 15 9 S 2.67 66.74 4.22 -107.50 -0.45 66.29 15 10 O -1.01 -27.07 15.39 -57.17 -0.88 -27.95 15 11 O -1.01 -27.24 16.83 -57.17 -0.96 -28.20 15 12 N -1.12 -21.40 5.55 -4.97 -0.03 -21.43 15 13 C 0.17 2.98 3.55 -68.03 -0.24 2.74 15 14 H 0.11 1.92 7.57 -51.93 -0.39 1.53 15 15 C -0.16 -2.61 10.35 -35.70 -0.37 -2.98 15 16 C -0.18 -2.44 10.78 -35.70 -0.38 -2.83 15 17 C -0.10 -1.13 6.81 -26.74 -0.18 -1.31 15 18 C -0.13 -1.68 6.90 -24.93 -0.17 -1.85 15 19 H 0.28 7.35 8.31 -40.82 -0.34 7.01 15 20 H 0.41 6.66 8.67 -34.47 -0.30 6.36 15 21 H 0.13 2.43 6.74 -52.48 -0.35 2.07 15 22 H 0.12 1.41 8.06 -52.48 -0.42 0.99 15 23 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 26 H 0.08 0.91 7.89 -51.93 -0.41 0.50 15 LS Contribution 234.74 15.07 3.54 3.54 Total: -1.00 -32.30 234.74 -6.37 -38.67 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -2.72 Total: 5.64 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: -1.13 Total: -29.71 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.75 Total: -44.45 kcal Atomic # 8 Polarization: -54.31 SS G_CDS: -1.84 Total: -56.16 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.51 Total: 16.19 kcal Atomic # 16 Polarization: 66.74 SS G_CDS: -0.45 Total: 66.29 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -32.30 -6.37 -38.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698236945.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.559 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds