Wall clock time and date at job start Mon Mar 30 2020 02:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 S 1.76209 * 119.99933 * 180.02562 * 7 2 1 10 10 O 1.42100 * 106.39762 * 293.53479 * 9 7 2 11 11 O 1.42094 * 106.40259 * 66.45795 * 9 7 2 12 12 N 1.65601 * 107.21799 * 179.97438 * 9 7 2 13 13 C 1.46505 * 119.99965 * 64.99503 * 12 9 7 14 14 H 1.08998 * 110.34335 * 24.30093 * 13 12 9 15 15 C 1.51097 * 110.38571 * 262.01167 * 13 12 9 16 16 C 1.30526 * 111.10325 * 224.75286 * 15 13 12 17 17 C 1.51104 * 111.10356 * 0.02562 * 16 15 13 18 18 C 1.54632 * 110.38353 * 146.58680 * 13 12 9 19 19 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 20 20 H 0.96992 * 120.00024 * 245.00103 * 12 9 7 21 21 H 1.08003 * 124.45138 * 44.73818 * 15 13 12 22 22 H 1.08006 * 124.44746 * 180.02562 * 16 15 13 23 23 H 1.08998 * 110.38706 * 135.25074 * 17 16 15 24 24 H 1.08999 * 110.38546 * 257.62288 * 17 16 15 25 25 H 1.08995 * 111.04105 * 261.47501 * 18 13 12 26 26 H 1.09004 * 111.03613 * 25.41428 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 16 3.7666 -1.1940 0.0001 10 8 4.1683 -0.6488 -1.2491 11 8 4.1674 -0.6504 1.2503 12 7 4.2569 -2.7758 0.0000 13 6 3.9619 -3.6340 -1.1502 14 1 3.8231 -3.0307 -2.0473 15 6 2.7317 -4.4692 -0.8819 16 6 2.9170 -5.7091 -1.2453 17 6 4.3020 -5.9075 -1.8161 18 6 5.0988 -4.6605 -1.3618 19 1 -0.4850 0.8400 -0.0004 20 1 4.7392 -3.1341 0.7614 21 1 1.8190 -4.0902 -0.4463 22 1 2.1776 -6.4906 -1.1506 23 1 4.7522 -6.8148 -1.4134 24 1 4.2612 -5.9536 -2.9043 25 1 5.7862 -4.3283 -2.1397 26 1 5.6295 -4.8544 -0.4296 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698236945.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:13 Heat of formation + Delta-G solvation = -90.790132 kcal Electronic energy + Delta-G solvation = -13055.710245 eV Core-core repulsion = 10646.372332 eV Total energy + Delta-G solvation = -2409.337913 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 217.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.72254 -37.65435 -36.49069 -35.19486 -34.36133 -29.85073 -28.54970 -27.37459 -21.93090 -21.14773 -19.67263 -19.51821 -18.67049 -17.58400 -17.06074 -16.30288 -15.96674 -15.44833 -14.95938 -14.59458 -13.84067 -13.51745 -13.38157 -13.05670 -12.78191 -12.67572 -12.57664 -12.55588 -12.12362 -12.02315 -11.69430 -11.33068 -11.15694 -10.28669 -9.86655 -8.95461 -7.50372 0.16760 1.04621 1.13986 1.21569 1.38246 1.89483 2.43132 2.61755 3.32443 3.70282 3.78574 4.17363 4.23360 4.43223 4.57672 4.59982 4.95486 5.01907 5.06699 5.25837 5.37182 5.45268 5.65667 5.94628 6.07260 6.35763 6.55573 8.21963 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.047321 B = 0.011278 C = 0.009926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.558762 B = 2482.030156 C = 2820.221263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.108 3.892 3 Si 0.824 3.176 4 H -0.241 1.241 5 H -0.220 1.220 6 H -0.228 1.228 7 C -1.035 5.035 8 H 0.111 0.889 9 S 2.695 3.305 10 O -1.030 7.030 11 O -1.033 7.033 12 N -1.100 6.100 13 C 0.161 3.839 14 H 0.083 0.917 15 C -0.208 4.208 16 C -0.144 4.144 17 C -0.095 4.095 18 C -0.123 4.123 19 H 0.290 0.710 20 H 0.419 0.581 21 H 0.105 0.895 22 H 0.144 0.856 23 H 0.098 0.902 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.504 -10.318 -2.975 13.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.108 4.108 3 Si 0.641 3.359 4 H -0.164 1.164 5 H -0.142 1.142 6 H -0.151 1.151 7 C -1.168 5.168 8 H 0.129 0.871 9 S 2.795 3.205 10 O -1.020 7.020 11 O -1.024 7.024 12 N -0.860 5.860 13 C 0.054 3.946 14 H 0.101 0.899 15 C -0.228 4.228 16 C -0.163 4.163 17 C -0.132 4.132 18 C -0.162 4.162 19 H 0.101 0.899 20 H 0.255 0.745 21 H 0.123 0.877 22 H 0.162 0.838 23 H 0.116 0.884 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.821 -9.386 -3.143 12.615 hybrid contribution -0.901 0.519 0.535 1.170 sum 6.919 -8.867 -2.608 11.545 Atomic orbital electron populations 1.70013 1.07427 1.30369 1.40693 1.25159 0.95612 1.01393 0.88641 0.87510 0.82979 0.82955 0.82464 1.16450 1.14232 1.15057 1.31047 1.17955 1.01802 1.65991 0.87114 1.00550 0.75855 0.71842 0.72287 1.93426 1.84777 1.77528 1.46228 1.93373 1.85280 1.77825 1.45886 1.55070 1.73233 1.29570 1.28086 1.20862 0.94364 0.91937 0.87446 0.89861 1.23786 0.99060 0.97010 1.02946 1.23555 0.99186 0.96099 0.97464 1.21447 0.91774 0.98369 1.01595 1.22882 0.96234 0.93719 1.03363 0.89928 0.74529 0.87691 0.83844 0.88365 0.88918 0.88962 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.05 13.96 21.45 0.30 -49.75 15 2 C 0.11 6.31 5.47 84.65 0.46 6.77 15 3 Si 0.82 41.70 26.54 68.60 1.82 43.52 15 4 H -0.24 -11.87 7.11 99.48 0.71 -11.17 15 5 H -0.22 -9.82 7.11 99.48 0.71 -9.12 15 6 H -0.23 -11.85 5.60 99.48 0.56 -11.29 15 7 C -1.04 -58.85 10.26 67.73 0.69 -58.16 15 8 H 0.11 6.39 6.67 -2.92 -0.02 6.37 15 9 S 2.69 135.44 4.22 -56.49 -0.24 135.20 15 10 O -1.03 -55.40 15.39 -128.00 -1.97 -57.37 15 11 O -1.03 -55.53 16.83 -128.00 -2.15 -57.69 15 12 N -1.10 -41.80 5.55 -169.65 -0.94 -42.74 15 13 C 0.16 5.40 3.55 44.93 0.16 5.56 15 14 H 0.08 3.10 7.57 -2.39 -0.02 3.08 15 15 C -0.21 -6.81 10.35 26.26 0.27 -6.54 15 16 C -0.14 -3.49 10.78 26.26 0.28 -3.21 15 17 C -0.09 -1.78 6.81 30.59 0.21 -1.57 15 18 C -0.12 -2.83 6.90 31.76 0.22 -2.61 15 19 H 0.29 15.33 8.31 -92.71 -0.77 14.56 15 20 H 0.42 13.32 8.67 -96.75 -0.84 12.48 15 21 H 0.11 4.00 6.74 -2.91 -0.02 3.99 15 22 H 0.14 2.83 8.06 -2.91 -0.02 2.81 15 23 H 0.10 1.37 8.14 -2.39 -0.02 1.35 15 24 H 0.09 1.52 8.14 -2.39 -0.02 1.50 15 25 H 0.09 1.88 8.14 -2.39 -0.02 1.86 15 26 H 0.09 1.83 7.89 -2.38 -0.02 1.81 15 Total: -1.00 -69.67 234.74 -0.68 -70.35 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.20 Total: 18.23 kcal Atomic # 6 Polarization: -62.05 SS G_CDS: 2.30 Total: -59.75 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -0.64 Total: -92.49 kcal Atomic # 8 Polarization: -110.93 SS G_CDS: -4.12 Total: -115.06 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.82 Total: 43.52 kcal Atomic # 16 Polarization: 135.44 SS G_CDS: -0.24 Total: 135.20 kcal Total: -69.67 -0.68 -70.35 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698236945.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.441 kcal (2) G-P(sol) polarization free energy of solvation -69.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds