Wall clock time and date at job start Mon Mar 30 2020 02:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30653 * 1 3 3 Si 1.86799 * 120.00250 * 2 1 4 4 H 1.48494 * 109.47223 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46658 * 120.00536 * 3 2 1 6 6 H 1.48496 * 109.47495 * 240.00085 * 3 2 1 7 7 C 1.40195 * 119.99686 * 179.73062 * 2 1 3 8 8 H 1.08000 * 120.00351 * 356.19882 * 7 2 1 9 9 C 1.41122 * 120.00070 * 176.20491 * 7 2 1 10 10 N 1.33053 * 119.04914 * 6.28432 * 9 7 2 11 11 C 1.32986 * 120.98549 * 179.71976 * 10 9 7 12 12 C 1.40895 * 121.72870 * 180.26815 * 11 10 9 13 13 C 1.36037 * 119.49115 * 180.27566 * 12 11 10 14 14 C 1.39250 * 121.72071 * 359.97438 * 13 12 11 15 15 C 1.36331 * 121.58866 * 0.06515 * 14 13 12 16 16 C 1.40102 * 119.47745 * 359.91430 * 15 14 13 17 17 C 1.40939 * 121.95300 * 180.02562 * 16 15 14 18 18 C 1.36302 * 118.19140 * 180.02562 * 17 16 15 19 19 F 1.35092 * 119.84199 * 180.02562 * 18 17 16 20 20 H 0.96993 * 120.00268 * 175.11408 * 1 2 3 21 21 H 1.08001 * 120.25615 * 0.29559 * 12 11 10 22 22 H 1.08003 * 119.14492 * 179.97438 * 13 12 11 23 23 H 1.07992 * 119.20254 * 179.97438 * 14 13 12 24 24 H 1.08007 * 120.26005 * 179.97438 * 15 14 13 25 25 H 1.08005 * 120.90703 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 1.2757 2.7464 0.0006 5 1 3.0944 1.6962 1.2125 6 1 3.0943 1.6964 -1.2124 7 6 2.0074 -1.2142 0.0057 8 1 1.4692 -2.1481 0.0721 9 6 3.4163 -1.2160 -0.0752 10 7 4.0676 -0.0567 -0.0289 11 6 5.3951 -0.0139 -0.0963 12 6 6.1009 1.2043 -0.0431 13 6 7.4589 1.1955 -0.1217 14 6 8.1770 0.0097 -0.2535 15 6 7.5523 -1.2007 -0.3115 16 6 6.1546 -1.2596 -0.2354 17 6 5.4555 -2.4821 -0.2895 18 6 4.0952 -2.4502 -0.2090 19 9 3.3917 -3.6024 -0.2569 20 1 -0.4850 -0.8369 -0.0715 21 1 5.5678 2.1380 0.0595 22 1 7.9943 2.1326 -0.0808 23 1 9.2545 0.0500 -0.3127 24 1 8.1305 -2.1072 -0.4143 25 1 5.9832 -3.4189 -0.3919 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702194004.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:12 Heat of formation + Delta-G solvation = -19.902159 kcal Electronic energy + Delta-G solvation = -13769.591944 eV Core-core repulsion = 11240.256802 eV Total energy + Delta-G solvation = -2529.335142 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.060 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.98531 -39.29378 -36.22408 -33.83471 -32.44692 -30.00904 -28.93721 -26.08096 -22.98235 -21.77495 -21.18036 -18.81175 -17.54009 -16.90620 -15.78671 -14.83473 -14.78974 -14.10436 -13.93467 -13.41798 -13.29708 -12.98423 -12.51010 -12.31018 -11.94129 -11.45880 -11.04822 -10.77354 -10.31724 -10.22787 -9.81413 -9.65603 -9.32591 -7.94573 -7.84417 -7.52371 -7.51035 -5.08503 1.23937 1.80617 2.89187 3.35710 3.53700 3.86663 3.91955 4.33446 4.59661 5.04588 5.21477 5.33104 5.41897 5.58935 5.68424 5.86953 6.03702 6.07219 6.44667 6.53357 6.79720 6.95046 7.09633 7.11132 7.19071 7.21672 7.53581 7.74487 7.94253 8.21123 9.19491 9.66372 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.029965 B = 0.013841 C = 0.009504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.205138 B = 2022.523778 C = 2945.337945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.042 3.958 3 Si 1.158 2.842 4 H -0.332 1.332 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.428 4.428 8 H 0.093 0.907 9 C 0.228 3.772 10 N -0.584 5.584 11 C 0.209 3.791 12 C -0.153 4.153 13 C -0.081 4.081 14 C -0.199 4.199 15 C -0.057 4.057 16 C -0.189 4.189 17 C -0.093 4.093 18 C 0.011 3.989 19 F -0.147 7.147 20 H 0.289 0.711 21 H 0.120 0.880 22 H 0.110 0.890 23 H 0.106 0.894 24 H 0.110 0.890 25 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.755 -0.412 -0.455 8.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.183 4.183 3 Si 0.992 3.008 4 H -0.266 1.266 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.460 4.460 8 H 0.111 0.889 9 C 0.100 3.900 10 N -0.307 5.307 11 C 0.079 3.921 12 C -0.173 4.173 13 C -0.101 4.101 14 C -0.219 4.219 15 C -0.075 4.075 16 C -0.194 4.194 17 C -0.116 4.116 18 C -0.011 4.011 19 F -0.126 7.126 20 H 0.100 0.900 21 H 0.138 0.862 22 H 0.128 0.872 23 H 0.124 0.876 24 H 0.128 0.872 25 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.923 1.765 -0.313 8.123 hybrid contribution 0.423 -3.043 -0.145 3.075 sum 8.346 -1.278 -0.457 8.455 Atomic orbital electron populations 1.70622 1.08260 1.33359 1.27075 1.28119 0.95141 1.06561 0.88443 0.81712 0.70317 0.68679 0.80070 1.26557 1.21023 1.21084 1.21161 0.90549 0.97294 1.36980 0.88930 1.18707 0.94537 0.85880 0.90895 1.66768 1.07175 1.24147 1.32612 1.19771 0.89072 0.91914 0.91358 1.20533 0.93651 0.96199 1.06883 1.20512 0.93808 0.97494 0.98321 1.20302 0.98766 0.92630 1.10185 1.20588 0.92605 0.97254 0.97088 1.19068 0.93849 0.92465 1.13971 1.20926 0.92263 0.97904 1.00481 1.18490 0.89762 0.82756 1.10120 1.91363 1.79487 1.47459 1.94334 0.89960 0.86220 0.87159 0.87569 0.87164 0.85639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.06 13.64 55.56 0.76 -19.30 15 2 C 0.04 1.10 5.52 -17.32 -0.10 1.00 15 3 Si 1.16 27.97 25.44 -169.99 -4.32 23.65 15 4 H -0.33 -7.85 7.11 56.52 0.40 -7.45 15 5 H -0.28 -6.87 6.96 56.52 0.39 -6.48 15 6 H -0.28 -6.91 6.91 56.52 0.39 -6.52 15 7 C -0.43 -11.31 9.38 -37.75 -0.35 -11.66 15 8 H 0.09 2.44 7.56 -52.49 -0.40 2.04 15 9 C 0.23 5.89 6.43 -85.00 -0.55 5.34 15 10 N -0.58 -14.95 4.41 -7.75 -0.03 -14.99 15 11 C 0.21 4.86 6.76 -83.01 -0.56 4.30 15 12 C -0.15 -3.09 10.03 -39.37 -0.39 -3.48 15 13 C -0.08 -1.38 9.90 -40.00 -0.40 -1.78 15 14 C -0.20 -3.25 9.92 -39.89 -0.40 -3.65 15 15 C -0.06 -0.99 9.80 -39.57 -0.39 -1.38 15 16 C -0.19 -3.98 5.88 -104.82 -0.62 -4.60 15 17 C -0.09 -1.92 9.87 -39.26 -0.39 -2.30 15 18 C 0.01 0.26 7.23 -39.04 -0.28 -0.02 15 19 F -0.15 -3.36 16.43 2.25 0.04 -3.32 15 20 H 0.29 7.09 8.72 -40.82 -0.36 6.73 15 21 H 0.12 2.31 8.06 -52.49 -0.42 1.89 15 22 H 0.11 1.50 8.06 -52.48 -0.42 1.08 15 23 H 0.11 1.41 8.06 -52.49 -0.42 0.98 15 24 H 0.11 1.60 8.06 -52.48 -0.42 1.18 15 25 H 0.13 2.16 8.06 -52.48 -0.42 1.73 15 LS Contribution 228.20 15.07 3.44 3.44 Total: -1.00 -27.34 228.20 -6.22 -33.57 By element: Atomic # 1 Polarization: -3.13 SS G_CDS: -1.68 Total: -4.81 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -4.42 Total: -18.24 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.72 Total: -34.29 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.04 Total: -3.32 kcal Atomic # 14 Polarization: 27.97 SS G_CDS: -4.32 Total: 23.65 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -27.34 -6.22 -33.57 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702194004.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.663 kcal (2) G-P(sol) polarization free energy of solvation -27.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds