Wall clock time and date at job start Mon Mar 30 2020 02:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30653 * 1 3 3 Si 1.86799 * 120.00250 * 2 1 4 4 H 1.48494 * 109.47223 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46658 * 120.00536 * 3 2 1 6 6 H 1.48496 * 109.47495 * 240.00085 * 3 2 1 7 7 C 1.40195 * 119.99686 * 179.73062 * 2 1 3 8 8 H 1.08000 * 120.00351 * 356.19882 * 7 2 1 9 9 C 1.41122 * 120.00070 * 176.20491 * 7 2 1 10 10 N 1.33053 * 119.04914 * 6.28432 * 9 7 2 11 11 C 1.32986 * 120.98549 * 179.71976 * 10 9 7 12 12 C 1.40895 * 121.72870 * 180.26815 * 11 10 9 13 13 C 1.36037 * 119.49115 * 180.27566 * 12 11 10 14 14 C 1.39250 * 121.72071 * 359.97438 * 13 12 11 15 15 C 1.36331 * 121.58866 * 0.06515 * 14 13 12 16 16 C 1.40102 * 119.47745 * 359.91430 * 15 14 13 17 17 C 1.40939 * 121.95300 * 180.02562 * 16 15 14 18 18 C 1.36302 * 118.19140 * 180.02562 * 17 16 15 19 19 F 1.35092 * 119.84199 * 180.02562 * 18 17 16 20 20 H 0.96993 * 120.00268 * 175.11408 * 1 2 3 21 21 H 1.08001 * 120.25615 * 0.29559 * 12 11 10 22 22 H 1.08003 * 119.14492 * 179.97438 * 13 12 11 23 23 H 1.07992 * 119.20254 * 179.97438 * 14 13 12 24 24 H 1.08007 * 120.26005 * 179.97438 * 15 14 13 25 25 H 1.08005 * 120.90703 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 1.2757 2.7464 0.0006 5 1 3.0944 1.6962 1.2125 6 1 3.0943 1.6964 -1.2124 7 6 2.0074 -1.2142 0.0057 8 1 1.4692 -2.1481 0.0721 9 6 3.4163 -1.2160 -0.0752 10 7 4.0676 -0.0567 -0.0289 11 6 5.3951 -0.0139 -0.0963 12 6 6.1009 1.2043 -0.0431 13 6 7.4589 1.1955 -0.1217 14 6 8.1770 0.0097 -0.2535 15 6 7.5523 -1.2007 -0.3115 16 6 6.1546 -1.2596 -0.2354 17 6 5.4555 -2.4821 -0.2895 18 6 4.0952 -2.4502 -0.2090 19 9 3.3917 -3.6024 -0.2569 20 1 -0.4850 -0.8369 -0.0715 21 1 5.5678 2.1380 0.0595 22 1 7.9943 2.1326 -0.0808 23 1 9.2545 0.0500 -0.3127 24 1 8.1305 -2.1072 -0.4143 25 1 5.9832 -3.4189 -0.3919 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702194004.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:12 Heat of formation + Delta-G solvation = -35.310941 kcal Electronic energy + Delta-G solvation = -13770.260118 eV Core-core repulsion = 11240.256802 eV Total energy + Delta-G solvation = -2530.003316 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.060 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.71104 -40.96617 -37.86706 -35.65665 -34.11234 -31.71428 -30.50730 -27.81181 -24.67987 -23.47489 -22.73022 -20.68702 -19.17356 -18.59327 -17.49193 -16.58892 -16.34922 -15.80751 -15.63049 -15.08430 -15.00833 -14.72982 -14.12560 -14.01688 -13.69520 -13.20939 -12.56553 -12.39702 -12.05112 -11.88068 -11.69308 -11.45551 -11.11438 -9.83980 -9.57366 -9.39782 -9.06223 -6.98757 -0.36060 0.12283 1.27247 1.52920 1.56554 1.98474 2.10825 2.41949 2.79608 3.38046 3.44973 3.74377 3.87179 4.06807 4.28952 4.34234 4.50473 4.65701 4.88029 4.96804 5.16599 5.20312 5.37871 5.52192 5.63172 5.75034 5.80331 6.03617 6.20520 6.39106 7.37733 7.74633 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.029965 B = 0.013841 C = 0.009504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.205138 B = 2022.523778 C = 2945.337945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.022 3.978 3 Si 1.193 2.807 4 H -0.327 1.327 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.479 4.479 8 H 0.074 0.926 9 C 0.223 3.777 10 N -0.602 5.602 11 C 0.162 3.838 12 C -0.175 4.175 13 C -0.064 4.064 14 C -0.176 4.176 15 C -0.056 4.056 16 C -0.199 4.199 17 C -0.064 4.064 18 C -0.033 4.033 19 F -0.152 7.152 20 H 0.287 0.713 21 H 0.118 0.882 22 H 0.154 0.846 23 H 0.155 0.845 24 H 0.152 0.848 25 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.628 -0.089 -0.700 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.199 4.199 3 Si 1.027 2.973 4 H -0.261 1.261 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.512 4.512 8 H 0.093 0.907 9 C 0.091 3.909 10 N -0.325 5.325 11 C 0.035 3.965 12 C -0.195 4.195 13 C -0.083 4.083 14 C -0.194 4.194 15 C -0.074 4.074 16 C -0.203 4.203 17 C -0.087 4.087 18 C -0.055 4.055 19 F -0.131 7.131 20 H 0.099 0.901 21 H 0.136 0.864 22 H 0.171 0.829 23 H 0.173 0.827 24 H 0.170 0.830 25 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 12.835 2.105 -0.558 13.018 hybrid contribution -0.504 -3.092 -0.087 3.134 sum 12.331 -0.988 -0.645 12.388 Atomic orbital electron populations 1.70619 1.08344 1.33232 1.30080 1.28612 0.95467 1.07713 0.88078 0.81218 0.69437 0.67581 0.79067 1.26067 1.21850 1.22003 1.20987 0.91375 0.96714 1.42115 0.90736 1.18876 0.94515 0.87282 0.90179 1.66648 1.08986 1.24444 1.32411 1.20383 0.88696 0.94321 0.93104 1.20792 0.95390 0.95259 1.08091 1.21068 0.92424 1.00061 0.94783 1.20965 1.01247 0.91516 1.05718 1.21082 0.90852 0.99818 0.95648 1.19469 0.95798 0.91588 1.13446 1.21384 0.91059 0.99674 0.96613 1.18533 0.91008 0.82133 1.13805 1.91336 1.79825 1.47175 1.94759 0.90140 0.86383 0.82877 0.82723 0.82993 0.81426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -44.08 13.64 21.87 0.30 -43.79 15 2 C 0.02 1.19 5.52 85.34 0.47 1.66 15 3 Si 1.19 59.36 25.44 68.60 1.75 61.11 15 4 H -0.33 -15.65 7.11 99.48 0.71 -14.94 15 5 H -0.29 -14.49 6.96 99.48 0.69 -13.80 15 6 H -0.29 -14.60 6.91 99.48 0.69 -13.92 15 7 C -0.48 -27.07 9.38 23.45 0.22 -26.85 15 8 H 0.07 4.30 7.56 -2.91 -0.02 4.27 15 9 C 0.22 11.93 6.43 40.47 0.26 12.19 15 10 N -0.60 -31.33 4.41 -178.42 -0.79 -32.12 15 11 C 0.16 7.31 6.76 41.79 0.28 7.59 15 12 C -0.18 -6.62 10.03 22.41 0.22 -6.40 15 13 C -0.06 -1.78 9.90 22.00 0.22 -1.57 15 14 C -0.18 -4.39 9.92 22.07 0.22 -4.18 15 15 C -0.06 -1.59 9.80 22.28 0.22 -1.37 15 16 C -0.20 -7.70 5.88 -19.99 -0.12 -7.82 15 17 C -0.06 -2.48 9.87 22.48 0.22 -2.26 15 18 C -0.03 -1.55 7.23 22.62 0.16 -1.39 15 19 F -0.15 -7.11 16.43 44.97 0.74 -6.37 15 20 H 0.29 15.19 8.72 -92.71 -0.81 14.38 15 21 H 0.12 4.40 8.06 -2.91 -0.02 4.37 15 22 H 0.15 3.04 8.06 -2.91 -0.02 3.02 15 23 H 0.16 2.58 8.06 -2.91 -0.02 2.55 15 24 H 0.15 3.15 8.06 -2.91 -0.02 3.13 15 25 H 0.17 4.97 8.06 -2.91 -0.02 4.95 15 Total: -1.00 -63.06 228.20 5.52 -57.55 By element: Atomic # 1 Polarization: -7.13 SS G_CDS: 1.14 Total: -5.99 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 2.38 Total: -30.38 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -0.49 Total: -75.91 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 0.74 Total: -6.37 kcal Atomic # 14 Polarization: 59.36 SS G_CDS: 1.75 Total: 61.11 kcal Total: -63.06 5.52 -57.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702194004.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.234 kcal (2) G-P(sol) polarization free energy of solvation -63.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds