Wall clock time and date at job start Mon Mar 30 2020 02:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47776 * 240.00080 * 3 2 1 5 5 H 1.48503 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47028 * 119.99683 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99614 * 359.97438 * 7 2 1 10 10 O 1.42106 * 106.40481 * 293.54308 * 9 7 2 11 11 O 1.42100 * 106.40287 * 66.45941 * 9 7 2 12 12 N 1.65599 * 107.21905 * 180.02562 * 9 7 2 13 13 C 1.48094 * 126.94671 * 90.02443 * 12 9 7 14 14 C 1.54958 * 103.26195 * 140.94550 * 13 12 9 15 15 C 1.54699 * 102.70064 * 37.55235 * 14 13 12 16 16 H 1.09009 * 117.82305 * 197.49311 * 15 14 13 17 17 C 1.53126 * 117.55536 * 42.06909 * 15 14 13 18 18 C 1.47386 * 126.94562 * 269.70859 * 12 9 7 19 19 H 1.08996 * 117.17983 * 344.29235 * 18 12 9 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09004 * 110.65900 * 259.38990 * 13 12 9 22 22 H 1.09002 * 110.66104 * 22.33330 * 13 12 9 23 23 H 1.09006 * 110.76044 * 155.85495 * 14 13 12 24 24 H 1.09000 * 110.76603 * 279.05983 * 14 13 12 25 25 H 1.08996 * 117.45328 * 15.62533 * 17 15 14 26 26 H 1.08995 * 117.45387 * 160.39218 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 16 1.1236 -2.7199 -0.0005 10 8 0.4518 -2.7955 1.2494 11 8 0.4510 -2.7950 -1.2500 12 7 2.2483 -3.9354 -0.0005 13 6 2.8525 -4.5891 1.1830 14 6 2.9361 -6.0782 0.7627 15 6 3.3070 -5.9882 -0.7364 16 1 3.1488 -6.8726 -1.3537 17 6 4.3587 -4.9529 -1.1450 18 6 2.8456 -4.5896 -1.1784 19 1 2.3460 -4.4434 -2.1360 20 1 -0.4849 0.8400 0.0004 21 1 3.8472 -4.1880 1.3779 22 1 2.2127 -4.4688 2.0573 23 1 3.7152 -6.5948 1.3233 24 1 1.9737 -6.5722 0.8967 25 1 4.9737 -4.5225 -0.3547 26 1 4.8579 -5.0951 -2.1034 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706975753.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:04 Heat of formation + Delta-G solvation = -55.501498 kcal Electronic energy + Delta-G solvation = -13189.332722 eV Core-core repulsion = 10781.525039 eV Total energy + Delta-G solvation = -2407.807683 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 217.056 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.12333 -35.24009 -33.96779 -33.09180 -31.63432 -29.33267 -26.10578 -23.66192 -21.10411 -19.69433 -18.59979 -17.63292 -16.34831 -15.27317 -15.08646 -14.27526 -14.05188 -13.62510 -12.97661 -12.51086 -12.21293 -12.03505 -11.63012 -11.20484 -11.18928 -10.76877 -10.61699 -10.46487 -10.30038 -10.23125 -10.19171 -9.69207 -9.23230 -8.88276 -7.98217 -6.68678 -5.31041 2.20037 3.09330 3.13177 3.19080 3.96655 4.09536 4.56804 4.64105 4.82980 5.06473 5.23580 5.37637 5.55718 5.84406 5.93589 5.94167 6.02591 6.07132 6.23521 6.32530 6.40292 6.45420 7.00683 7.34479 7.44286 7.99223 8.89609 10.24772 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.045229 B = 0.011100 C = 0.010268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.916623 B = 2521.992482 C = 2726.219042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.132 3.868 3 Si 0.922 3.078 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.020 5.020 8 H 0.102 0.898 9 S 2.730 3.270 10 O -1.000 7.000 11 O -0.999 6.999 12 N -0.992 5.992 13 C 0.112 3.888 14 C -0.103 4.103 15 C -0.187 4.187 16 H 0.112 0.888 17 C -0.173 4.173 18 C 0.092 3.908 19 H 0.138 0.862 20 H 0.292 0.708 21 H 0.063 0.937 22 H 0.088 0.912 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.865 -7.629 -0.216 10.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.085 4.085 3 Si 0.745 3.255 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.189 1.189 7 C -1.153 5.153 8 H 0.120 0.880 9 S 2.832 3.168 10 O -0.990 6.990 11 O -0.990 6.990 12 N -0.822 5.822 13 C -0.014 4.014 14 C -0.142 4.142 15 C -0.208 4.208 16 H 0.130 0.870 17 C -0.213 4.213 18 C -0.017 4.017 19 H 0.156 0.844 20 H 0.102 0.898 21 H 0.081 0.919 22 H 0.106 0.894 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.112 0.888 26 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.610 -7.581 -0.182 10.059 hybrid contribution 1.067 1.235 -0.015 1.632 sum 7.677 -6.346 -0.197 9.962 Atomic orbital electron populations 1.69885 1.06783 1.30867 1.40184 1.24764 0.94482 1.00813 0.88486 0.86184 0.79871 0.79609 0.79785 1.18831 1.20081 1.18875 1.30613 1.06154 1.11820 1.66756 0.88010 1.00120 0.71552 0.72376 0.72765 1.93358 1.72376 1.87468 1.45830 1.93350 1.72426 1.87430 1.45793 1.59284 1.59365 1.53576 1.10023 1.22109 0.98420 0.91462 0.89418 1.22245 1.01388 0.96716 0.93805 1.23543 1.05269 0.94585 0.97404 0.86998 1.23695 0.92476 1.02347 1.02756 1.22356 0.93721 0.94123 0.91481 0.84404 0.89803 0.91887 0.89398 0.90855 0.90578 0.88806 0.88005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.27 13.19 55.43 0.73 -24.54 15 2 C 0.13 3.76 5.46 -17.82 -0.10 3.66 15 3 Si 0.92 20.87 29.54 -169.99 -5.02 15.85 15 4 H -0.26 -5.77 7.11 56.52 0.40 -5.37 15 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 6 H -0.26 -5.77 7.11 56.52 0.40 -5.37 15 7 C -1.02 -28.74 9.75 30.60 0.30 -28.45 15 8 H 0.10 2.65 7.81 -52.49 -0.41 2.24 15 9 S 2.73 74.50 5.27 -107.50 -0.57 73.93 15 10 O -1.00 -29.69 17.33 -57.17 -0.99 -30.68 15 11 O -1.00 -29.75 17.56 -57.17 -1.00 -30.75 15 12 N -0.99 -21.03 3.68 -102.47 -0.38 -21.41 15 13 C 0.11 1.94 6.78 -2.13 -0.01 1.93 15 14 C -0.10 -1.43 7.01 -24.80 -0.17 -1.60 15 15 C -0.19 -2.62 7.10 -89.27 -0.63 -3.26 15 16 H 0.11 1.33 8.14 -51.92 -0.42 0.91 15 17 C -0.17 -2.39 9.98 -25.26 -0.25 -2.64 15 18 C 0.09 1.64 7.41 -65.64 -0.49 1.15 15 19 H 0.14 2.46 8.01 -51.93 -0.42 2.04 15 20 H 0.29 7.81 8.31 -40.82 -0.34 7.47 15 21 H 0.06 0.98 7.31 -51.93 -0.38 0.60 15 22 H 0.09 1.56 7.67 -51.93 -0.40 1.16 15 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.09 1.28 7.20 -51.93 -0.37 0.91 15 26 H 0.10 1.17 8.14 -51.93 -0.42 0.75 15 LS Contribution 240.27 15.07 3.62 3.62 Total: -1.00 -34.61 240.27 -7.77 -42.38 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -2.80 Total: 0.82 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: -1.36 Total: -29.22 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.35 Total: -45.95 kcal Atomic # 8 Polarization: -59.43 SS G_CDS: -2.00 Total: -61.43 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 74.50 SS G_CDS: -0.57 Total: 73.93 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -34.61 -7.77 -42.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706975753.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.122 kcal (2) G-P(sol) polarization free energy of solvation -34.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds