Wall clock time and date at job start Mon Mar 30 2020 02:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30502 * 1 3 3 Si 1.86805 * 119.99917 * 2 1 4 4 H 1.48497 * 109.47121 * 274.98799 * 3 2 1 5 5 H 1.48503 * 109.46976 * 34.98221 * 3 2 1 6 6 H 1.48499 * 109.47315 * 154.98482 * 3 2 1 7 7 C 1.40395 * 120.00389 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99797 * 186.25305 * 7 2 1 9 9 C 1.40789 * 120.00170 * 6.24473 * 7 2 1 10 10 O 1.22016 * 120.00012 * 353.66302 * 9 7 2 11 11 C 1.47516 * 120.00421 * 173.66015 * 9 7 2 12 12 C 1.38733 * 119.68737 * 180.02562 * 11 9 7 13 13 N 1.35853 * 119.45457 * 180.02562 * 12 11 9 14 14 C 1.36581 * 133.54899 * 180.02562 * 13 12 11 15 15 C 1.35679 * 107.00713 * 179.97438 * 14 13 12 16 16 N 1.33128 * 108.64028 * 0.02562 * 15 14 13 17 17 C 1.32369 * 109.32598 * 359.97438 * 16 15 14 18 18 C 1.40993 * 132.86206 * 180.02562 * 17 16 15 19 19 N 1.31101 * 120.14476 * 180.21705 * 18 17 16 20 20 H 0.96998 * 120.00182 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.27779 * 359.97438 * 12 11 9 22 22 H 1.07992 * 126.49353 * 359.96334 * 14 13 12 23 23 H 1.08001 * 125.67639 * 179.97438 * 15 14 13 24 24 H 1.07998 * 119.93003 * 359.93459 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3050 0.0000 0.0000 3 14 2.2390 1.6178 0.0000 4 1 2.3811 2.1073 -1.3947 5 1 1.4930 2.6200 0.8027 6 1 3.5853 1.4122 0.5920 7 6 2.0071 -1.2158 -0.0005 8 1 3.0823 -1.2185 0.1013 9 6 1.3095 -2.4315 -0.1337 10 8 0.0894 -2.4380 -0.1324 11 6 2.0537 -3.6973 -0.2749 12 6 1.3596 -4.8914 -0.4063 13 7 2.0497 -6.0544 -0.5355 14 6 1.6750 -7.3599 -0.6799 15 6 2.8138 -8.0928 -0.7623 16 7 3.8567 -7.2704 -0.6716 17 6 3.4235 -6.0272 -0.5335 18 6 4.0862 -4.7902 -0.3971 19 7 3.3949 -3.6836 -0.2695 20 1 -0.4850 0.8400 0.0004 21 1 0.2797 -4.8965 -0.4049 22 1 0.6640 -7.7371 -0.7205 23 1 2.8656 -9.1651 -0.8809 24 1 5.1655 -4.7547 -0.3930 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709659304.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:41 Heat of formation + Delta-G solvation = 38.954078 kcal Electronic energy + Delta-G solvation = -13516.548735 eV Core-core repulsion = 11009.685753 eV Total energy + Delta-G solvation = -2506.862982 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.98361 -39.86242 -38.13746 -35.36280 -34.84471 -31.75462 -30.36434 -29.12060 -25.65884 -24.88421 -22.89458 -22.09645 -19.79107 -18.52102 -17.97619 -17.19404 -17.06255 -16.44625 -15.86491 -15.46213 -15.00049 -14.68334 -14.66927 -14.03487 -13.35278 -13.32588 -12.75945 -12.58673 -12.49570 -12.03206 -11.39689 -11.03262 -11.00369 -9.98095 -9.80822 -9.12431 -8.47664 -7.16014 -0.59050 0.06513 1.33841 1.37827 1.42135 1.58122 1.71222 2.12724 2.21029 2.61743 3.07802 3.18575 3.33113 3.55781 3.76958 4.20269 4.31884 4.38652 4.53028 4.83686 5.13088 5.22105 5.54035 5.71139 6.02739 6.53062 6.60501 6.65407 6.84136 8.08040 8.36145 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.064492 B = 0.007557 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.061435 B = 3704.171886 C = 4125.123724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.021 3.979 3 Si 1.000 3.000 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.248 1.248 7 C -0.503 4.503 8 H 0.095 0.905 9 C 0.373 3.627 10 O -0.593 6.593 11 C 0.030 3.970 12 C 0.023 3.977 13 N -0.348 5.348 14 C -0.092 4.092 15 C 0.034 3.966 16 N -0.487 5.487 17 C 0.128 3.872 18 C 0.179 3.821 19 N -0.449 5.449 20 H 0.287 0.713 21 H 0.178 0.822 22 H 0.219 0.781 23 H 0.228 0.772 24 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.309 -8.758 -1.215 10.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.199 4.199 3 Si 0.817 3.183 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.171 1.171 7 C -0.533 4.533 8 H 0.113 0.887 9 C 0.273 3.727 10 O -0.487 6.487 11 C -0.091 4.091 12 C -0.104 4.104 13 N -0.021 5.021 14 C -0.226 4.226 15 C -0.120 4.120 16 N -0.209 5.209 17 C -0.115 4.115 18 C -0.004 4.004 19 N -0.162 5.162 20 H 0.098 0.902 21 H 0.195 0.805 22 H 0.236 0.764 23 H 0.244 0.756 24 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 5.538 -8.046 -1.127 9.833 hybrid contribution -1.283 -0.024 -0.074 1.285 sum 4.255 -8.070 -1.201 9.201 Atomic orbital electron populations 1.70055 1.09891 1.30477 1.29553 1.27349 0.95577 1.05651 0.91355 0.84966 0.79186 0.74358 0.79740 1.18295 1.18727 1.17145 1.21226 0.96995 0.91860 1.43262 0.88656 1.17938 0.87746 0.86344 0.80629 1.90546 1.15790 1.88079 1.54314 1.22789 0.90236 0.95906 1.00122 1.23068 0.99956 0.83188 1.04165 1.42968 1.09235 1.07335 1.42563 1.23778 1.04130 0.79513 1.15157 1.23408 0.86040 1.01608 1.00933 1.70454 1.31804 0.97596 1.21073 1.22507 0.81349 0.97191 1.10448 1.23477 1.02266 0.82105 0.92600 1.68342 1.07192 1.29056 1.11583 0.90189 0.80507 0.76448 0.75607 0.76394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.97 11.74 21.90 0.26 -43.72 14 2 C 0.02 1.13 5.49 85.42 0.47 1.60 14 3 Si 1.00 38.69 29.57 68.60 2.03 40.72 14 4 H -0.26 -9.55 7.11 99.48 0.71 -8.85 14 5 H -0.26 -9.55 7.11 99.48 0.71 -8.84 14 6 H -0.25 -9.16 7.11 99.48 0.71 -8.45 14 7 C -0.50 -28.26 8.95 23.42 0.21 -28.05 14 8 H 0.10 5.05 7.35 -2.91 -0.02 5.03 14 9 C 0.37 21.60 6.86 25.34 0.17 21.77 14 10 O -0.59 -37.88 14.85 -5.37 -0.08 -37.96 14 11 C 0.03 1.45 6.71 41.36 0.28 1.72 14 12 C 0.02 0.94 10.64 84.19 0.90 1.84 14 13 N -0.35 -12.33 2.94 -349.05 -1.03 -13.36 14 14 C -0.09 -2.40 11.82 83.36 0.99 -1.42 14 15 C 0.03 0.82 11.84 83.90 0.99 1.81 14 16 N -0.49 -15.31 11.28 -194.02 -2.19 -17.50 14 17 C 0.13 4.50 7.83 134.07 1.05 5.55 14 18 C 0.18 6.25 11.31 85.48 0.97 7.22 14 19 N -0.45 -19.52 9.49 -183.37 -1.74 -21.26 14 20 H 0.29 14.46 8.29 -92.71 -0.77 13.70 14 21 H 0.18 7.24 7.60 -2.91 -0.02 7.21 14 22 H 0.22 3.87 8.06 -2.91 -0.02 3.85 14 23 H 0.23 3.20 8.06 -2.91 -0.02 3.18 14 24 H 0.22 5.61 8.06 -2.91 -0.02 5.58 14 Total: -1.00 -73.13 230.06 4.51 -68.62 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 1.24 Total: 12.40 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 6.02 Total: 12.05 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -4.70 Total: -95.83 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.08 Total: -37.96 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -73.13 4.51 -68.62 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709659304.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.571 kcal (2) G-P(sol) polarization free energy of solvation -73.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds