Wall clock time and date at job start Mon Mar 30 2020 02:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86799 * 120.00049 * 2 1 4 4 H 1.48501 * 109.46801 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47220 * 299.99673 * 3 2 1 6 6 H 1.48497 * 109.47264 * 60.00427 * 3 2 1 7 7 C 1.39931 * 119.99420 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99750 * 197.64335 * 7 2 1 9 9 C 1.41442 * 120.00592 * 17.64267 * 7 2 1 10 10 C 1.40722 * 120.09553 * 24.95642 * 9 7 2 11 11 C 1.37740 * 119.91300 * 179.97438 * 10 9 7 12 12 C 1.38100 * 120.46702 * 359.97438 * 11 10 9 13 13 C 1.40709 * 120.60052 * 0.04346 * 12 11 10 14 14 C 1.38930 * 119.46545 * 359.97438 * 13 12 11 15 15 C 1.50966 * 109.73214 * 179.97438 * 14 13 12 16 16 H 1.09003 * 110.13927 * 119.23362 * 15 14 13 17 17 N 1.46892 * 110.09452 * 240.79780 * 15 14 13 18 18 C 1.53493 * 106.27249 * 0.02562 * 15 14 13 19 19 C 1.47337 * 129.86753 * 179.97438 * 13 12 11 20 20 O 1.21251 * 125.95811 * 359.96063 * 19 13 12 21 21 H 0.97001 * 119.99696 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.04129 * 359.96440 * 10 9 7 23 23 H 1.07999 * 119.76683 * 180.02562 * 11 10 9 24 24 H 1.08001 * 119.69991 * 180.02562 * 12 11 10 25 25 H 1.00895 * 111.00253 * 178.30489 * 17 15 14 26 26 H 1.00909 * 111.00279 * 302.25705 * 17 15 14 27 27 H 1.09001 * 110.28798 * 118.94121 * 18 15 14 28 28 H 1.09007 * 110.28635 * 240.95464 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0078 -1.2119 -0.0005 8 1 3.0497 -1.2341 0.2829 9 6 1.3505 -2.4079 -0.3723 10 6 0.2240 -2.3615 -1.2143 11 6 -0.4129 -3.5285 -1.5744 12 6 0.0463 -4.7473 -1.1152 13 6 1.1706 -4.8176 -0.2721 14 6 1.8213 -3.6473 0.0984 15 6 2.9877 -3.9758 0.9987 16 1 3.9195 -3.6407 0.5430 17 7 2.8091 -3.3370 2.3093 18 6 2.9956 -5.5030 1.1525 19 6 1.8274 -5.9908 0.3303 20 8 1.4881 -7.1465 0.1909 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1408 -1.4121 -1.5776 23 1 -1.2771 -3.4902 -2.2211 24 1 -0.4623 -5.6547 -1.4057 25 1 3.5682 -3.5702 2.9318 26 1 2.7138 -2.3369 2.2143 27 1 3.9278 -5.9167 0.7678 28 1 2.8642 -5.7781 2.1990 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713773201.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:53 Heat of formation + Delta-G solvation = -40.329718 kcal Electronic energy + Delta-G solvation = -14141.567439 eV Core-core repulsion = 11734.806797 eV Total energy + Delta-G solvation = -2406.760642 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.15567 -38.90864 -36.63296 -35.48674 -32.35956 -31.46705 -29.46609 -27.21018 -25.23248 -23.17542 -21.35376 -20.88260 -18.71963 -17.41786 -16.88988 -16.78707 -16.38309 -16.03721 -15.51093 -14.95995 -14.81368 -14.59559 -13.98856 -13.48074 -13.12007 -12.90299 -12.71811 -12.62914 -12.42257 -12.18988 -11.89795 -11.29272 -11.05239 -10.57000 -9.65990 -9.42562 -9.24076 -8.63294 -6.33226 0.04904 0.90720 1.43052 1.46447 1.57383 1.78448 2.22168 2.75313 3.22998 3.49253 3.74208 3.99143 4.22871 4.35325 4.42020 4.57442 4.72191 4.82677 4.95177 5.10637 5.14441 5.34788 5.51092 5.84141 5.95039 6.01022 6.18893 6.36051 6.57741 6.61142 6.84480 6.90523 6.93681 8.34038 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.036432 B = 0.010590 C = 0.008572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.367938 B = 2643.488264 C = 3265.673319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.039 3.961 3 Si 0.979 3.021 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.477 4.477 8 H 0.085 0.915 9 C 0.092 3.908 10 C -0.163 4.163 11 C -0.116 4.116 12 C -0.187 4.187 13 C -0.186 4.186 14 C -0.148 4.148 15 C 0.153 3.847 16 H 0.054 0.946 17 N -0.844 5.844 18 C -0.152 4.152 19 C 0.411 3.589 20 O -0.499 6.499 21 H 0.288 0.712 22 H 0.113 0.887 23 H 0.118 0.882 24 H 0.104 0.896 25 H 0.349 0.651 26 H 0.351 0.649 27 H 0.129 0.871 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 0.181 1.797 6.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.176 4.176 3 Si 0.801 3.199 4 H -0.178 1.178 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.506 4.506 8 H 0.103 0.897 9 C 0.089 3.911 10 C -0.182 4.182 11 C -0.135 4.135 12 C -0.207 4.207 13 C -0.188 4.188 14 C -0.150 4.150 15 C 0.042 3.958 16 H 0.072 0.928 17 N -0.377 5.377 18 C -0.190 4.190 19 C 0.293 3.707 20 O -0.379 6.379 21 H 0.099 0.901 22 H 0.130 0.870 23 H 0.136 0.864 24 H 0.122 0.878 25 H 0.163 0.837 26 H 0.166 0.834 27 H 0.147 0.853 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.372 -0.683 1.811 5.710 hybrid contribution 0.558 1.338 -0.433 1.513 sum 5.930 0.655 1.378 6.123 Atomic orbital electron populations 1.69869 1.09113 1.30608 1.35260 1.26688 0.95310 1.04359 0.91281 0.85187 0.79644 0.76528 0.78561 1.17756 1.19654 1.19439 1.19669 0.98128 0.91423 1.41396 0.89699 1.17448 0.91971 0.91943 0.89727 1.21503 0.99403 0.97166 1.00156 1.20846 0.99694 0.92446 1.00476 1.20623 0.98953 0.97027 1.04081 1.20996 0.99164 0.95929 1.02713 1.20723 1.00258 0.92642 1.01345 1.20060 0.94313 0.92529 0.88849 0.92805 1.58722 1.51216 1.16679 1.11110 1.22367 0.98455 0.95463 1.02665 1.23010 0.84211 0.86552 0.76884 1.90414 1.66977 1.22645 1.57823 0.90092 0.86959 0.86355 0.87821 0.83743 0.83393 0.85282 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.19 10.97 21.82 0.24 -39.95 15 2 C 0.04 1.80 5.13 85.25 0.44 2.23 15 3 Si 0.98 34.80 29.59 68.60 2.03 36.83 15 4 H -0.25 -8.67 7.11 99.48 0.71 -7.96 15 5 H -0.27 -9.57 7.11 99.48 0.71 -8.86 15 6 H -0.27 -9.32 7.11 99.48 0.71 -8.62 15 7 C -0.48 -22.67 7.66 23.47 0.18 -22.49 15 8 H 0.08 3.76 7.53 -2.91 -0.02 3.74 15 9 C 0.09 4.57 5.57 -21.28 -0.12 4.45 15 10 C -0.16 -8.20 8.69 22.76 0.20 -8.00 15 11 C -0.12 -5.40 9.99 22.12 0.22 -5.18 15 12 C -0.19 -8.71 10.11 22.84 0.23 -8.48 15 13 C -0.19 -8.57 6.11 -20.11 -0.12 -8.69 15 14 C -0.15 -6.71 5.73 -19.01 -0.11 -6.82 15 15 C 0.15 5.44 3.70 44.42 0.16 5.60 15 16 H 0.05 1.78 8.14 -2.39 -0.02 1.76 15 17 N -0.84 -27.88 9.14 -170.77 -1.56 -29.44 15 18 C -0.15 -4.74 6.64 30.09 0.20 -4.54 15 19 C 0.41 16.79 7.77 28.16 0.22 17.01 15 20 O -0.50 -22.19 18.02 -2.94 -0.05 -22.25 15 21 H 0.29 12.79 8.30 -92.71 -0.77 12.02 15 22 H 0.11 5.83 6.17 -2.91 -0.02 5.81 15 23 H 0.12 4.79 8.06 -2.91 -0.02 4.77 15 24 H 0.10 4.51 8.06 -2.91 -0.02 4.48 15 25 H 0.35 8.64 9.06 -89.70 -0.81 7.83 15 26 H 0.35 12.64 7.49 -89.69 -0.67 11.97 15 27 H 0.13 3.16 8.14 -2.39 -0.02 3.14 15 28 H 0.12 3.46 7.93 -2.38 -0.02 3.44 15 Total: -1.00 -58.06 245.03 1.88 -56.18 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -0.28 Total: 33.53 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 1.50 Total: -34.90 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: -1.32 Total: -69.39 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.05 Total: -22.25 kcal Atomic # 14 Polarization: 34.80 SS G_CDS: 2.03 Total: 36.83 kcal Total: -58.06 1.88 -56.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713773201.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.855 kcal (2) G-P(sol) polarization free energy of solvation -58.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds