Wall clock time and date at job start Mon Mar 30 2020 02:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30585 * 1 3 3 Si 1.86793 * 120.00158 * 2 1 4 4 H 1.48503 * 109.47004 * 275.40412 * 3 2 1 5 5 H 1.48505 * 109.47341 * 35.40050 * 3 2 1 6 6 H 1.48497 * 109.47343 * 155.40475 * 3 2 1 7 7 C 1.40330 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00191 * 341.74404 * 7 2 1 9 9 C 1.40992 * 119.99871 * 161.73900 * 7 2 1 10 10 C 1.40982 * 120.17028 * 150.46531 * 9 7 2 11 11 C 1.35972 * 119.91352 * 180.32173 * 10 9 7 12 12 C 1.40917 * 120.40835 * 359.68414 * 11 10 9 13 13 C 1.39983 * 119.70944 * 0.02562 * 12 11 10 14 14 C 1.36541 * 120.18583 * 0.02562 * 13 12 11 15 15 C 1.51038 * 109.52931 * 180.02562 * 13 12 11 16 16 H 1.09003 * 110.09226 * 240.73236 * 15 13 12 17 17 N 1.46900 * 110.09325 * 119.20415 * 15 13 12 18 18 C 1.53460 * 106.28194 * 359.97438 * 15 13 12 19 19 C 1.47012 * 129.73229 * 180.02562 * 12 11 10 20 20 O 1.21317 * 125.89249 * 359.96182 * 19 12 11 21 21 H 0.97001 * 120.00059 * 0.02562 * 1 2 3 22 22 H 1.07996 * 120.04096 * 359.97438 * 10 9 7 23 23 H 1.08001 * 119.79550 * 179.71092 * 11 10 9 24 24 H 1.07998 * 119.94125 * 180.02562 * 14 13 12 25 25 H 1.00906 * 110.99833 * 180.02562 * 17 15 13 26 26 H 1.00901 * 110.99991 * 303.94639 * 17 15 13 27 27 H 1.09000 * 110.25650 * 118.98872 * 18 15 13 28 28 H 1.09004 * 110.25957 * 240.92390 * 18 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 2.3732 2.1122 -1.3939 5 1 1.4991 2.6170 0.8111 6 1 3.5898 1.4098 0.5827 7 6 2.0075 -1.2153 0.0005 8 1 1.5082 -2.1269 0.2939 9 6 3.3641 -1.2463 -0.3821 10 6 4.2320 -2.2145 0.1628 11 6 5.5409 -2.2354 -0.2049 12 6 6.0360 -1.2985 -1.1337 13 6 5.1734 -0.3407 -1.6798 14 6 3.8581 -0.3133 -1.3141 15 6 5.9384 0.5384 -2.6407 16 1 5.9083 1.5750 -2.3050 17 7 5.3668 0.4285 -3.9895 18 6 7.3842 0.0238 -2.6367 19 6 7.3948 -1.1354 -1.6707 20 8 8.3584 -1.8151 -1.3859 21 1 -0.4850 0.8400 -0.0004 22 1 3.8590 -2.9350 0.8756 23 1 6.2052 -2.9750 0.2173 24 1 3.1961 0.4271 -1.7382 25 1 5.8686 1.0107 -4.6433 26 1 5.3518 -0.5318 -4.2987 27 1 7.6675 -0.3134 -3.6337 28 1 8.0624 0.8066 -2.2968 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713796596.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:32 Heat of formation + Delta-G solvation = -26.555973 kcal Electronic energy + Delta-G solvation = -14066.217431 eV Core-core repulsion = 11660.054064 eV Total energy + Delta-G solvation = -2406.163367 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.63609 -37.20588 -35.62900 -33.73710 -31.09177 -29.90512 -28.70857 -25.56001 -23.49313 -21.92922 -19.68715 -19.16571 -17.57233 -16.25017 -15.70852 -15.20508 -14.83324 -14.50442 -13.69813 -13.55000 -13.25223 -12.84675 -12.60135 -12.27770 -12.05830 -11.96576 -11.24929 -11.00441 -10.87192 -10.42218 -10.27560 -9.74226 -9.37730 -8.95073 -8.41661 -7.91000 -7.80295 -7.30759 -4.79832 1.68428 2.59865 2.93344 3.04677 3.13272 3.33292 3.78314 4.28091 4.69447 4.88774 5.07074 5.24214 5.35800 5.49238 5.82835 5.97714 6.11266 6.27022 6.39810 6.54980 6.66431 6.91511 7.17380 7.29527 7.41342 7.49090 7.63777 7.70873 7.85841 8.02317 8.36631 8.41337 8.47031 9.67793 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.035403 B = 0.010954 C = 0.009235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.710075 B = 2555.636751 C = 3031.159479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.082 3.918 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.287 1.287 6 H -0.241 1.241 7 C -0.412 4.412 8 H 0.099 0.901 9 C 0.108 3.892 10 C -0.220 4.220 11 C -0.012 4.012 12 C -0.334 4.334 13 C -0.003 4.003 14 C -0.218 4.218 15 C 0.131 3.869 16 H 0.091 0.909 17 N -0.833 5.833 18 C -0.204 4.204 19 C 0.406 3.594 20 O -0.501 6.501 21 H 0.293 0.707 22 H 0.107 0.893 23 H 0.099 0.901 24 H 0.107 0.893 25 H 0.336 0.664 26 H 0.344 0.656 27 H 0.090 0.910 28 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.228 3.794 -3.812 7.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.142 4.142 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.164 1.164 7 C -0.438 4.438 8 H 0.117 0.883 9 C 0.104 3.896 10 C -0.239 4.239 11 C -0.030 4.030 12 C -0.337 4.337 13 C -0.004 4.004 14 C -0.237 4.237 15 C 0.019 3.981 16 H 0.109 0.891 17 N -0.362 5.362 18 C -0.244 4.244 19 C 0.292 3.708 20 O -0.383 6.383 21 H 0.104 0.896 22 H 0.125 0.875 23 H 0.117 0.883 24 H 0.125 0.875 25 H 0.149 0.851 26 H 0.158 0.842 27 H 0.108 0.892 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.725 3.853 -3.346 6.954 hybrid contribution 0.989 0.394 -0.310 1.109 sum 5.714 4.247 -3.655 8.003 Atomic orbital electron populations 1.69570 1.08499 1.31397 1.30350 1.26431 0.94847 1.02529 0.90406 0.86223 0.81336 0.78777 0.79659 1.18557 1.21422 1.16397 1.19823 0.93065 0.96306 1.34577 0.88313 1.17807 0.92757 0.90482 0.88570 1.20678 0.93027 1.04597 1.05624 1.20321 0.94859 0.94689 0.93149 1.20106 0.95287 1.06330 1.12005 1.19632 0.93390 0.93604 0.93823 1.20186 0.94245 1.05307 1.03952 1.20574 0.89237 0.99139 0.89121 0.89117 1.58780 1.59982 1.14736 1.02696 1.23115 0.99861 1.00095 1.01326 1.22055 0.87377 0.81988 0.79395 1.90430 1.40669 1.47858 1.59358 0.89558 0.87482 0.88313 0.87485 0.85114 0.84248 0.89189 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.93 13.92 55.57 0.77 -18.16 15 2 C 0.08 1.98 5.40 -17.30 -0.09 1.88 15 3 Si 0.92 19.42 24.52 -169.99 -4.17 15.25 15 4 H -0.26 -5.43 6.71 56.52 0.38 -5.05 15 5 H -0.29 -5.82 7.11 56.52 0.40 -5.42 15 6 H -0.24 -5.30 6.86 56.52 0.39 -4.91 15 7 C -0.41 -10.29 9.57 -37.75 -0.36 -10.66 15 8 H 0.10 2.55 8.06 -52.49 -0.42 2.12 15 9 C 0.11 2.59 5.11 -106.84 -0.55 2.04 15 10 C -0.22 -4.97 9.72 -39.36 -0.38 -5.35 15 11 C -0.01 -0.25 10.04 -39.38 -0.40 -0.65 15 12 C -0.33 -7.27 6.13 -104.67 -0.64 -7.91 15 13 C 0.00 -0.07 5.70 -104.42 -0.60 -0.67 15 14 C -0.22 -5.01 7.11 -39.22 -0.28 -5.29 15 15 C 0.13 2.19 4.07 -68.46 -0.28 1.91 15 16 H 0.09 1.44 8.14 -51.93 -0.42 1.02 15 17 N -0.83 -12.27 9.16 -5.31 -0.05 -12.32 15 18 C -0.20 -3.18 6.62 -27.55 -0.18 -3.37 15 19 C 0.41 8.22 7.75 -30.66 -0.24 7.98 15 20 O -0.50 -11.32 18.03 5.53 0.10 -11.22 15 21 H 0.29 6.40 8.29 -40.82 -0.34 6.07 15 22 H 0.11 2.24 8.06 -52.49 -0.42 1.81 15 23 H 0.10 2.01 8.06 -52.49 -0.42 1.58 15 24 H 0.11 2.48 4.72 -52.49 -0.25 2.24 15 25 H 0.34 3.83 9.07 -39.29 -0.36 3.47 15 26 H 0.34 4.98 8.98 -39.29 -0.35 4.63 15 27 H 0.09 1.22 7.93 -51.93 -0.41 0.81 15 28 H 0.09 1.29 8.14 -51.93 -0.42 0.87 15 LS Contribution 242.97 15.07 3.66 3.66 Total: -1.00 -27.30 242.97 -6.33 -33.63 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -2.65 Total: 9.24 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -3.99 Total: -20.08 kcal Atomic # 7 Polarization: -31.20 SS G_CDS: 0.72 Total: -30.47 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.10 Total: -11.22 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.17 Total: 15.25 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -27.30 -6.33 -33.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713796596.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.070 kcal (2) G-P(sol) polarization free energy of solvation -27.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds