Wall clock time and date at job start Mon Mar 30 2020 02:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 120.00164 * 2 1 4 4 H 1.48498 * 109.47033 * 275.41888 * 3 2 1 5 5 H 1.48497 * 109.46828 * 35.41724 * 3 2 1 6 6 H 1.48503 * 109.47254 * 155.41849 * 3 2 1 7 7 C 1.39942 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99519 * 341.72759 * 7 2 1 9 9 C 1.41441 * 120.00125 * 161.72212 * 7 2 1 10 10 C 1.40804 * 120.19313 * 330.20839 * 9 7 2 11 11 C 1.37600 * 119.95221 * 180.02562 * 10 9 7 12 12 C 1.38681 * 120.69020 * 359.97438 * 11 10 9 13 13 C 1.39819 * 120.29828 * 0.02562 * 12 11 10 14 14 C 1.39856 * 119.58069 * 0.02562 * 13 12 11 15 15 C 1.47321 * 110.60899 * 179.97438 * 13 12 11 16 16 O 1.21247 * 125.94183 * 180.02562 * 15 13 12 17 17 C 1.50923 * 108.11466 * 0.02562 * 15 13 12 18 18 C 1.51076 * 130.20396 * 179.97438 * 12 11 10 19 19 H 1.09007 * 110.07357 * 299.24427 * 18 12 11 20 20 N 1.46903 * 110.07697 * 60.79237 * 18 12 11 21 21 H 0.96996 * 119.99846 * 359.97438 * 1 2 3 22 22 H 1.08007 * 120.01886 * 359.97438 * 10 9 7 23 23 H 1.08009 * 119.65440 * 179.97438 * 11 10 9 24 24 H 1.08002 * 120.06492 * 179.97438 * 14 13 12 25 25 H 1.09002 * 110.25623 * 241.00850 * 17 15 13 26 26 H 1.09007 * 110.25656 * 118.98486 * 17 15 13 27 27 H 1.00901 * 110.99269 * 179.97438 * 20 18 12 28 28 H 1.00900 * 111.00083 * 303.95492 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3753 2.1125 -1.3938 5 1 1.5017 2.6169 0.8114 6 1 3.5924 1.4098 0.5824 7 6 2.0080 -1.2119 -0.0005 8 1 1.5088 -2.1237 0.2923 9 6 3.3689 -1.2426 -0.3847 10 6 3.8629 -0.3096 -1.3164 11 6 5.1876 -0.3444 -1.6870 12 6 6.0478 -1.2912 -1.1516 13 6 5.5782 -2.2270 -0.2249 14 6 4.2337 -2.2032 0.1594 15 6 6.6651 -3.1256 0.2009 16 8 6.5655 -4.0367 0.9946 17 6 7.9242 -2.7149 -0.5228 18 6 7.5196 -1.5237 -1.4013 19 1 7.6882 -1.7590 -2.4522 20 7 8.2900 -0.3322 -1.0207 21 1 -0.4850 0.8400 0.0004 22 1 3.2023 0.4322 -1.7405 23 1 5.5613 0.3734 -2.4024 24 1 3.8625 -2.9226 0.8743 25 1 8.2873 -3.5343 -1.1432 26 1 8.6898 -2.4144 0.1926 27 1 9.2761 -0.4727 -1.1816 28 1 7.9564 0.4853 -1.5090 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713797121.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:34 Heat of formation + Delta-G solvation = -42.326415 kcal Electronic energy + Delta-G solvation = -13943.596157 eV Core-core repulsion = 11536.748932 eV Total energy + Delta-G solvation = -2406.847225 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.27143 -39.04764 -37.15039 -35.15332 -32.67490 -31.82210 -30.13830 -27.11927 -25.26816 -23.19118 -21.75340 -20.87052 -19.12003 -17.53690 -17.08715 -16.91178 -16.63071 -16.06504 -15.45897 -15.17397 -15.02560 -14.64793 -14.42400 -13.87260 -13.46819 -12.96693 -12.94063 -12.69573 -12.48764 -12.19656 -11.76794 -11.57862 -11.17680 -10.60291 -9.73864 -9.67425 -9.35457 -8.93981 -6.56806 -0.13362 0.66699 1.23203 1.39461 1.44576 1.59789 2.09558 2.53263 3.14041 3.33120 3.63065 3.79763 4.04638 4.21737 4.30203 4.42098 4.60457 4.75932 4.84655 4.86938 4.98012 5.13901 5.38935 5.51688 5.72399 5.79925 6.07734 6.25149 6.31101 6.54808 6.60396 6.70971 6.78829 8.15110 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.038811 B = 0.009844 C = 0.008334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.266430 B = 2843.595865 C = 3358.730788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.047 3.953 3 Si 0.965 3.035 4 H -0.243 1.243 5 H -0.276 1.276 6 H -0.254 1.254 7 C -0.489 4.489 8 H 0.051 0.949 9 C 0.063 3.937 10 C -0.209 4.209 11 C -0.068 4.068 12 C -0.148 4.148 13 C -0.172 4.172 14 C -0.165 4.165 15 C 0.405 3.595 16 O -0.498 6.498 17 C -0.151 4.151 18 C 0.155 3.845 19 H 0.078 0.922 20 N -0.847 5.847 21 H 0.296 0.704 22 H 0.112 0.888 23 H 0.144 0.856 24 H 0.086 0.914 25 H 0.133 0.867 26 H 0.127 0.873 27 H 0.357 0.643 28 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.927 3.652 -6.138 16.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.168 4.168 3 Si 0.787 3.213 4 H -0.168 1.168 5 H -0.203 1.203 6 H -0.178 1.178 7 C -0.519 4.519 8 H 0.069 0.931 9 C 0.060 3.940 10 C -0.228 4.228 11 C -0.087 4.087 12 C -0.150 4.150 13 C -0.174 4.174 14 C -0.185 4.185 15 C 0.286 3.714 16 O -0.377 6.377 17 C -0.188 4.188 18 C 0.044 3.956 19 H 0.095 0.905 20 N -0.381 5.381 21 H 0.106 0.894 22 H 0.130 0.870 23 H 0.162 0.838 24 H 0.104 0.896 25 H 0.150 0.850 26 H 0.144 0.856 27 H 0.172 0.828 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 14.330 3.130 -4.998 15.496 hybrid contribution -0.659 0.286 -0.534 0.895 sum 13.672 3.416 -5.532 15.139 Atomic orbital electron populations 1.69714 1.09290 1.31711 1.36642 1.26867 0.95398 1.04274 0.90219 0.85504 0.79475 0.76078 0.80235 1.16792 1.20278 1.17827 1.19437 0.94383 0.95809 1.42245 0.93095 1.17704 0.92545 0.92426 0.91281 1.21337 0.96912 1.03067 1.01480 1.20419 0.91757 0.97437 0.99037 1.20319 0.96095 0.97942 1.00594 1.21134 0.94386 1.00534 1.01317 1.21166 0.92574 1.02417 1.02315 1.23208 0.91346 0.79370 0.77429 1.90451 1.87034 1.29261 1.30987 1.22372 0.96080 0.99698 1.00677 1.20162 0.87589 0.90359 0.97468 0.90466 1.58674 1.07889 1.04635 1.66867 0.89356 0.87006 0.83839 0.89551 0.84958 0.85553 0.82817 0.83429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.47 13.93 21.83 0.30 -46.17 15 2 C 0.05 2.52 5.40 85.26 0.46 2.98 15 3 Si 0.97 41.38 24.52 68.60 1.68 43.06 15 4 H -0.24 -9.36 6.70 99.48 0.67 -8.69 15 5 H -0.28 -11.21 7.11 99.48 0.71 -10.50 15 6 H -0.25 -11.28 6.86 99.48 0.68 -10.59 15 7 C -0.49 -28.01 9.57 23.47 0.22 -27.79 15 8 H 0.05 3.19 8.06 -2.91 -0.02 3.16 15 9 C 0.06 3.26 5.09 -21.38 -0.11 3.15 15 10 C -0.21 -9.30 7.17 22.75 0.16 -9.14 15 11 C -0.07 -2.48 9.99 22.22 0.22 -2.26 15 12 C -0.15 -5.20 5.78 -19.26 -0.11 -5.31 15 13 C -0.17 -7.31 6.10 -20.11 -0.12 -7.43 15 14 C -0.16 -8.28 9.86 23.15 0.23 -8.05 15 15 C 0.40 15.14 7.77 28.15 0.22 15.36 15 16 O -0.50 -21.69 18.02 -2.93 -0.05 -21.74 15 17 C -0.15 -3.67 6.64 30.07 0.20 -3.47 15 18 C 0.15 3.71 4.06 44.44 0.18 3.89 15 19 H 0.08 1.46 8.14 -2.38 -0.02 1.44 15 20 N -0.85 -16.77 9.14 -170.67 -1.56 -18.33 15 21 H 0.30 14.43 8.30 -92.71 -0.77 13.66 15 22 H 0.11 4.84 4.72 -2.91 -0.01 4.82 15 23 H 0.14 3.91 8.06 -2.91 -0.02 3.89 15 24 H 0.09 4.53 8.06 -2.91 -0.02 4.50 15 25 H 0.13 2.39 8.14 -2.39 -0.02 2.37 15 26 H 0.13 2.70 7.93 -2.38 -0.02 2.68 15 27 H 0.36 4.68 9.07 -89.69 -0.81 3.87 15 28 H 0.35 6.32 8.99 -89.69 -0.81 5.51 15 Total: -1.00 -66.57 243.18 1.45 -65.12 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -0.47 Total: 16.13 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 1.55 Total: -38.06 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: -1.26 Total: -64.50 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.05 Total: -21.74 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.68 Total: 43.06 kcal Total: -66.57 1.45 -65.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713797121.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.789 kcal (2) G-P(sol) polarization free energy of solvation -66.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds