Wall clock time and date at job start Mon Mar 30 2020 02:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99872 * 2 1 4 4 H 1.48499 * 109.46606 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46809 * 299.99205 * 3 2 1 6 6 H 1.48494 * 109.47241 * 59.99493 * 3 2 1 7 7 C 1.37875 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99464 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00255 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46988 * 180.02562 * 9 7 2 11 11 C 1.46193 * 123.95336 * 270.55877 * 10 9 7 12 12 C 1.53727 * 107.15432 * 180.41813 * 11 10 9 13 13 H 1.09002 * 117.73427 * 220.29672 * 12 11 10 14 14 C 1.53881 * 104.08624 * 359.04608 * 12 11 10 15 15 H 1.08998 * 121.01444 * 223.33181 * 14 12 11 16 16 C 1.33820 * 123.95150 * 90.02700 * 10 9 7 17 17 O 1.21277 * 124.56910 * 0.04781 * 16 10 9 18 18 C 1.52978 * 59.82189 * 115.47598 * 14 12 11 19 19 F 1.39901 * 117.46409 * 252.40050 * 18 14 12 20 20 F 1.39902 * 117.45658 * 107.59691 * 18 14 12 21 21 H 0.97001 * 119.99378 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.46812 * 60.00400 * 9 7 2 23 23 H 1.09000 * 109.47396 * 299.99956 * 9 7 2 24 24 H 1.09001 * 110.53137 * 60.68163 * 11 10 9 25 25 H 1.09007 * 109.28003 * 299.45304 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 2.7426 -4.2267 -1.2094 12 6 3.6875 -5.3546 -0.7642 13 1 4.6206 -5.4810 -1.3133 14 6 3.6434 -5.2954 0.7728 15 1 4.5545 -5.3832 1.3646 16 6 2.6883 -4.1801 1.1133 17 8 2.3987 -3.8424 2.2415 18 6 3.1142 -6.5267 0.0352 19 9 1.7280 -6.7131 0.0027 20 9 3.8782 -7.6968 0.1024 21 1 -0.4849 0.8401 -0.0004 22 1 0.6241 -2.5574 -0.8880 23 1 0.6247 -2.5563 0.8920 24 1 3.2928 -3.4923 -1.7976 25 1 1.9239 -4.6395 -1.7988 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715661329.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:22 Heat of formation + Delta-G solvation = -111.982972 kcal Electronic energy + Delta-G solvation = -14584.168668 eV Core-core repulsion = 11620.071378 eV Total energy + Delta-G solvation = -2964.097290 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.065 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.88594 -48.55300 -41.72801 -37.96952 -36.05093 -34.29199 -29.80547 -28.56323 -25.88705 -23.70006 -22.48916 -20.74562 -19.12331 -18.73007 -17.72036 -17.54612 -17.43198 -16.38573 -16.16437 -15.74436 -15.17368 -14.79578 -14.76754 -14.51371 -14.42251 -14.14076 -13.57337 -13.30642 -12.88265 -12.64972 -12.29747 -12.01013 -11.70820 -11.28204 -10.91474 -10.67734 -9.63137 -8.27090 -6.42923 1.07855 1.38795 1.41300 1.52869 1.60345 2.07106 2.33533 2.39745 2.77897 2.98955 3.04531 3.37885 3.53672 4.09446 4.41444 4.47034 4.66310 4.77941 4.87635 5.08155 5.47453 5.72771 5.95592 6.34633 6.65259 7.10780 7.31048 8.80876 Molecular weight = 217.07amu Principal moments of inertia in cm(-1) A = 0.058067 B = 0.007664 C = 0.007599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.082153 B = 3652.747838 C = 3683.573640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.283 1.283 7 C -0.550 4.550 8 H 0.061 0.939 9 C 0.268 3.732 10 N -0.597 5.597 11 C 0.117 3.883 12 C -0.112 4.112 13 H 0.212 0.788 14 C -0.213 4.213 15 H 0.184 0.816 16 C 0.520 3.480 17 O -0.583 6.583 18 C 0.247 3.753 19 F -0.170 7.170 20 F -0.140 7.140 21 H 0.269 0.731 22 H 0.037 0.963 23 H -0.001 1.001 24 H 0.117 0.883 25 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.483 -10.878 -6.063 15.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.209 1.209 7 C -0.588 4.588 8 H 0.079 0.921 9 C 0.148 3.852 10 N -0.327 5.327 11 C -0.005 4.005 12 C -0.131 4.131 13 H 0.229 0.771 14 C -0.236 4.236 15 H 0.202 0.798 16 C 0.307 3.693 17 O -0.465 6.465 18 C 0.210 3.790 19 F -0.151 7.151 20 F -0.120 7.120 21 H 0.078 0.922 22 H 0.055 0.945 23 H 0.017 0.983 24 H 0.135 0.865 25 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.080 -10.555 -5.532 14.982 hybrid contribution -0.247 0.702 0.499 0.896 sum 8.834 -9.852 -5.033 14.157 Atomic orbital electron populations 1.70057 1.07675 1.28415 1.50504 1.25885 0.95796 1.03201 0.94084 0.85284 0.78827 0.78256 0.77932 1.18812 1.19343 1.20947 1.21718 0.93632 0.91453 1.52021 0.92125 1.18822 0.87150 0.82689 0.96517 1.48343 1.43671 1.33802 1.06922 1.21590 0.97903 0.93812 0.87212 1.24972 1.03539 0.91698 0.92855 0.77080 1.24440 1.03793 0.94926 1.00408 0.79830 1.19912 0.81049 0.83728 0.84624 1.90644 1.62937 1.68888 1.23981 1.19665 0.73610 0.79498 1.06270 1.93043 1.29309 1.95973 1.96769 1.93070 1.73486 1.48813 1.96646 0.92189 0.94490 0.98291 0.86494 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.68 13.29 21.45 0.28 -54.39 15 2 C 0.01 0.55 5.46 84.65 0.46 1.01 15 3 Si 0.97 43.39 29.54 68.60 2.03 45.42 15 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 15 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 6 H -0.28 -12.66 7.11 99.48 0.71 -11.96 15 7 C -0.55 -30.63 9.39 25.60 0.24 -30.39 15 8 H 0.06 3.30 7.81 -2.91 -0.02 3.28 15 9 C 0.27 14.15 5.63 85.63 0.48 14.63 15 10 N -0.60 -25.14 2.88 -826.87 -2.38 -27.52 15 11 C 0.12 3.22 6.95 86.68 0.60 3.82 15 12 C -0.11 -2.25 7.16 -10.25 -0.07 -2.32 15 13 H 0.21 1.99 8.14 -2.39 -0.02 1.97 15 14 C -0.21 -6.02 6.95 -11.24 -0.08 -6.09 15 15 H 0.18 4.11 8.14 -2.39 -0.02 4.09 15 16 C 0.52 22.36 7.57 87.82 0.66 23.03 15 17 O -0.58 -31.32 17.51 -3.02 -0.05 -31.38 15 18 C 0.25 6.19 5.13 30.59 0.16 6.35 15 19 F -0.17 -5.35 16.99 44.97 0.76 -4.58 15 20 F -0.14 -3.11 17.60 44.97 0.79 -2.32 15 21 H 0.27 14.82 8.31 -92.71 -0.77 14.05 15 22 H 0.04 1.94 8.14 -2.39 -0.02 1.92 15 23 H 0.00 -0.06 7.87 -2.39 -0.02 -0.08 15 24 H 0.12 2.84 8.14 -2.39 -0.02 2.82 15 25 H 0.10 2.41 8.14 -2.38 -0.02 2.39 15 Total: -1.00 -72.54 238.05 5.10 -67.44 By element: Atomic # 1 Polarization: -3.92 SS G_CDS: 1.21 Total: -2.71 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 2.46 Total: 10.05 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -2.09 Total: -81.91 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.05 Total: -31.38 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 1.56 Total: -6.91 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -72.54 5.10 -67.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715661329.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.543 kcal (2) G-P(sol) polarization free energy of solvation -72.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds