Wall clock time and date at job start Mon Mar 30 2020 02:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 119.99727 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00135 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99983 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00018 * 3 2 1 7 7 C 1.38798 * 119.99922 * 180.27859 * 2 1 3 8 8 H 1.08001 * 119.99840 * 359.71862 * 7 2 1 9 9 S 1.76195 * 119.99970 * 179.72448 * 7 2 1 10 10 C 1.80992 * 100.00161 * 179.97438 * 9 7 2 11 11 H 1.09007 * 110.41075 * 181.00947 * 10 9 7 12 12 N 1.48607 * 110.45662 * 58.54551 * 10 9 7 13 13 N 1.47115 * 103.04436 * 203.60158 * 12 10 9 14 14 C 1.47979 * 104.48757 * 38.06617 * 13 12 10 15 15 H 1.08996 * 111.37181 * 98.19993 * 14 13 12 16 16 N 1.48028 * 109.04075 * 221.49083 * 14 13 12 17 17 C 1.48682 * 104.07544 * 137.84366 * 16 14 13 18 18 N 1.48593 * 102.81684 * 322.50114 * 17 16 14 19 19 N 1.46498 * 104.63227 * 37.67812 * 18 17 16 20 20 H 0.96999 * 120.00112 * 359.97438 * 1 2 3 21 21 H 1.00893 * 111.00225 * 322.48152 * 12 10 9 22 22 H 1.00895 * 111.00645 * 278.35228 * 13 12 10 23 23 H 1.00899 * 111.00385 * 18.37438 * 16 14 13 24 24 H 1.08999 * 110.74642 * 80.83880 * 17 16 14 25 25 H 1.09003 * 110.74447 * 203.98986 * 17 16 14 26 26 H 1.00901 * 110.99760 * 157.47470 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5478 1.4403 -0.7000 6 1 1.4477 2.6527 -0.7000 7 6 2.0103 -1.2020 -0.0058 8 1 1.4703 -2.1373 -0.0058 9 16 3.7722 -1.2020 -0.0132 10 6 4.0866 -2.9844 -0.0181 11 1 5.1586 -3.1814 -0.0049 12 7 3.4563 -3.6197 -1.2045 13 7 3.2859 -5.0182 -0.7810 14 6 2.9040 -4.9290 0.6459 15 1 1.8247 -5.0107 0.7740 16 7 3.6181 -5.9812 1.4036 17 6 4.0561 -5.2962 2.6484 18 7 4.4219 -3.9390 2.1666 19 7 3.4248 -3.6299 1.1388 20 1 -0.4850 0.8400 0.0004 21 1 2.5656 -3.1938 -1.4123 22 1 4.1436 -5.5374 -0.8939 23 1 4.4105 -6.3270 0.8833 24 1 3.2390 -5.2433 3.3679 25 1 4.9193 -5.8002 3.0832 26 1 4.3868 -3.2668 2.9183 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953067817.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:30 Heat of formation + Delta-G solvation = 111.716589 kcal Electronic energy + Delta-G solvation = -13147.202024 eV Core-core repulsion = 10811.230964 eV Total energy + Delta-G solvation = -2335.971060 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 217.069 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.98064 -35.49743 -32.52628 -32.47727 -29.14290 -28.36958 -25.68197 -23.35050 -22.79197 -21.25271 -18.17513 -17.24810 -16.57896 -15.44982 -15.28392 -15.05911 -14.39536 -14.05637 -13.63881 -13.47883 -12.95553 -12.68962 -12.43918 -11.43001 -11.14446 -11.04333 -10.22834 -10.01378 -9.77498 -9.38925 -9.06496 -8.97551 -8.73610 -7.90010 -7.17616 -6.34089 -4.09721 2.67501 3.23611 3.34682 3.37192 3.57278 3.72568 4.13215 4.23445 4.44368 4.68738 4.94343 5.03137 5.06846 5.32516 5.46832 5.69078 5.77966 5.99025 6.54116 6.71260 7.15180 7.17320 7.32633 7.53360 7.89052 8.40455 9.10102 10.75033 Molecular weight = 217.07amu Principal moments of inertia in cm(-1) A = 0.046363 B = 0.010141 C = 0.009936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.778612 B = 2760.502799 C = 2817.303604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.095 3.905 3 Si 0.858 3.142 4 H -0.270 1.270 5 H -0.239 1.239 6 H -0.274 1.274 7 C -0.502 4.502 8 H 0.093 0.907 9 S -0.137 6.137 10 C 0.216 3.784 11 H 0.103 0.897 12 N -0.475 5.475 13 N -0.524 5.524 14 C 0.324 3.676 15 H 0.148 0.852 16 N -0.672 5.672 17 C 0.186 3.814 18 N -0.550 5.550 19 N -0.376 5.376 20 H 0.271 0.729 21 H 0.379 0.621 22 H 0.347 0.653 23 H 0.341 0.659 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.186 -7.699 3.219 11.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.114 4.114 3 Si 0.683 3.317 4 H -0.195 1.195 5 H -0.164 1.164 6 H -0.199 1.199 7 C -0.649 4.649 8 H 0.111 0.889 9 S 0.090 5.910 10 C -0.094 4.094 11 H 0.121 0.879 12 N -0.204 5.204 13 N -0.249 5.249 14 C 0.034 3.966 15 H 0.165 0.835 16 N -0.308 5.308 17 C -0.035 4.035 18 N -0.276 5.276 19 N -0.200 5.200 20 H 0.081 0.919 21 H 0.201 0.799 22 H 0.165 0.835 23 H 0.160 0.840 24 H 0.088 0.912 25 H 0.118 0.882 26 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 8.202 -7.081 2.479 11.115 hybrid contribution -0.088 0.349 1.287 1.336 sum 8.113 -6.731 3.766 11.195 Atomic orbital electron populations 1.69925 1.05822 1.27708 1.47729 1.24736 0.94491 0.98759 0.93402 0.86755 0.81654 0.83689 0.79603 1.19472 1.16357 1.19893 1.22029 0.86698 0.97503 1.58717 0.88866 1.84420 1.12237 0.99386 1.94959 1.26084 0.99667 0.99009 0.84599 0.87914 1.67548 1.29555 0.94381 1.28880 1.66771 1.36214 1.06560 1.15405 1.26273 1.01015 0.83403 0.85881 0.83537 1.63847 1.27762 1.32278 1.06956 1.24128 0.99514 0.86965 0.92894 1.66723 1.41284 1.05059 1.14495 1.71388 1.21832 1.17058 1.09729 0.91910 0.79869 0.83488 0.84035 0.91224 0.88246 0.81812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 13.97 55.49 0.78 -24.90 15 2 C 0.10 2.66 5.50 -17.43 -0.10 2.56 15 3 Si 0.86 20.76 27.74 -169.99 -4.72 16.05 15 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.24 -5.67 6.73 56.52 0.38 -5.29 15 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.50 -13.64 8.84 30.94 0.27 -13.36 15 8 H 0.09 2.73 7.24 -52.49 -0.38 2.35 15 9 S -0.14 -3.20 19.54 -107.50 -2.10 -5.30 15 10 C 0.22 4.26 3.93 -59.68 -0.23 4.02 15 11 H 0.10 1.98 7.92 -51.93 -0.41 1.57 15 12 N -0.47 -9.19 8.27 -8.97 -0.07 -9.26 15 13 N -0.52 -8.67 8.28 -8.06 -0.07 -8.73 15 14 C 0.32 5.45 5.52 -261.67 -1.45 4.01 15 15 H 0.15 2.72 8.14 -51.93 -0.42 2.30 15 16 N -0.67 -9.04 7.68 -111.91 -0.86 -9.90 15 17 C 0.19 2.32 8.42 -59.03 -0.50 1.82 15 18 N -0.55 -8.32 7.50 -11.20 -0.08 -8.41 15 19 N -0.38 -6.99 5.80 -109.25 -0.63 -7.62 15 20 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 21 H 0.38 8.30 7.11 -173.20 -1.23 7.07 15 22 H 0.35 5.01 8.00 -173.19 -1.39 3.63 15 23 H 0.34 4.10 7.85 -39.29 -0.31 3.79 15 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 25 H 0.10 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.36 5.38 9.08 -173.72 -1.58 3.81 15 LS Contribution 231.88 15.07 3.49 3.49 Total: -1.00 -28.40 231.88 -11.98 -40.38 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -5.72 Total: 15.14 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -2.00 Total: -0.95 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -0.94 Total: -68.82 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.72 Total: 16.05 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -2.10 Total: -5.30 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -28.40 -11.98 -40.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067817.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.100 kcal (2) G-P(sol) polarization free energy of solvation -28.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds