Wall clock time and date at job start Mon Mar 30 2020 02:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00366 * 2 1 4 4 H 1.48497 * 109.47092 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46793 * 299.99788 * 3 2 1 6 6 H 1.48495 * 109.46875 * 59.99910 * 3 2 1 7 7 C 1.38802 * 119.99346 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99416 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00305 * 359.73084 * 7 2 1 10 10 C 1.80998 * 99.99901 * 175.25264 * 9 7 2 11 11 H 1.08998 * 110.48745 * 317.96349 * 10 9 7 12 12 N 1.48807 * 110.54389 * 80.80614 * 10 9 7 13 13 N 1.47293 * 102.43018 * 158.48151 * 12 10 9 14 14 C 1.48087 * 104.24524 * 320.37272 * 13 12 10 15 15 H 1.09000 * 111.42463 * 146.04773 * 14 13 12 16 16 N 1.48009 * 109.00100 * 270.10975 * 14 13 12 17 17 C 1.48676 * 104.09461 * 137.71076 * 16 14 13 18 18 N 1.48585 * 102.81247 * 322.45144 * 17 16 14 19 19 N 1.46482 * 104.65617 * 37.70126 * 18 17 16 20 20 H 0.97003 * 119.99562 * 0.02562 * 1 2 3 21 21 H 1.00902 * 111.00094 * 277.01000 * 12 10 9 22 22 H 1.00899 * 111.00132 * 79.94150 * 13 12 10 23 23 H 1.00898 * 111.00055 * 257.19105 * 16 14 13 24 24 H 1.09000 * 110.74311 * 80.77740 * 17 16 14 25 25 H 1.09001 * 110.74655 * 203.93656 * 17 16 14 26 26 H 1.00906 * 110.99833 * 277.89613 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3462 0.0006 5 1 1.8917 2.3963 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0084 10 6 2.5097 -3.8889 -0.1415 11 1 3.2360 -3.5261 -0.8688 12 7 3.1552 -4.1063 1.1815 13 7 3.8370 -5.3982 0.9932 14 6 2.8790 -6.2040 0.2021 15 1 3.3949 -6.8731 -0.4865 16 7 1.9895 -6.9407 1.1278 17 6 0.6407 -6.8073 0.5167 18 7 0.6567 -5.4210 -0.0178 19 7 2.0188 -5.2345 -0.5234 20 1 -0.4850 0.8401 -0.0004 21 1 3.8185 -3.3737 1.3850 22 1 4.7066 -5.2790 0.4954 23 1 2.2613 -7.9099 1.1958 24 1 0.5085 -7.5300 -0.2885 25 1 -0.1380 -6.9245 1.2704 26 1 0.4452 -4.7516 0.7070 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953067818.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:31 Heat of formation + Delta-G solvation = 88.943325 kcal Electronic energy + Delta-G solvation = -12992.823499 eV Core-core repulsion = 10655.864916 eV Total energy + Delta-G solvation = -2336.958583 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 217.069 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.18299 -36.73880 -34.66293 -33.67091 -30.79620 -29.76766 -27.71948 -24.55167 -23.89773 -22.43971 -20.03920 -18.92283 -17.67483 -17.16724 -16.92947 -16.67267 -16.23371 -15.56825 -15.03238 -14.39320 -14.23502 -13.67183 -13.45238 -13.20992 -12.97351 -12.69157 -11.99768 -11.87941 -11.43395 -11.22259 -10.49346 -9.99324 -9.75095 -9.63019 -8.72225 -8.41163 -6.18475 1.07538 1.38945 1.40379 1.53246 2.14703 2.37103 2.43175 2.85013 2.93960 3.07890 3.44214 3.66001 3.84164 3.94567 4.09031 4.19408 4.52303 4.83578 5.33688 5.36462 5.40762 5.93158 6.01878 6.12748 6.15549 6.43540 7.01459 8.67814 Molecular weight = 217.07amu Principal moments of inertia in cm(-1) A = 0.059214 B = 0.008971 C = 0.008100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.745263 B = 3120.295815 C = 3455.952489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.023 3.977 3 Si 0.996 3.004 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.550 4.550 8 H 0.075 0.925 9 S -0.071 6.071 10 C 0.156 3.844 11 H 0.072 0.928 12 N -0.480 5.480 13 N -0.498 5.498 14 C 0.317 3.683 15 H 0.129 0.871 16 N -0.680 5.680 17 C 0.182 3.818 18 N -0.496 5.496 19 N -0.315 5.315 20 H 0.274 0.726 21 H 0.347 0.653 22 H 0.330 0.670 23 H 0.368 0.632 24 H 0.089 0.911 25 H 0.110 0.890 26 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.110 -10.889 0.083 12.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.183 4.183 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.699 4.699 8 H 0.093 0.907 9 S 0.154 5.846 10 C -0.155 4.155 11 H 0.090 0.910 12 N -0.206 5.206 13 N -0.222 5.222 14 C 0.027 3.973 15 H 0.145 0.855 16 N -0.319 5.319 17 C -0.038 4.038 18 N -0.222 5.222 19 N -0.134 5.134 20 H 0.083 0.917 21 H 0.163 0.837 22 H 0.146 0.854 23 H 0.187 0.813 24 H 0.107 0.893 25 H 0.128 0.872 26 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.714 -11.229 0.502 11.837 hybrid contribution 3.031 1.533 -0.667 3.461 sum 6.745 -9.696 -0.165 11.812 Atomic orbital electron populations 1.70120 1.07652 1.28814 1.47450 1.25985 0.95947 1.02889 0.93446 0.84940 0.78423 0.76646 0.78165 1.18606 1.19848 1.19830 1.23175 0.95043 0.92116 1.59552 0.90702 1.84725 1.07440 0.97686 1.94712 1.26711 1.01183 0.94987 0.92627 0.91039 1.69300 1.25439 1.00584 1.25257 1.66880 1.03807 1.04528 1.46975 1.25630 0.90381 0.93751 0.87575 0.85452 1.63433 1.01917 1.19090 1.47439 1.24464 0.91737 0.90355 0.97251 1.67612 1.10733 1.05142 1.38667 1.71654 0.98032 1.00944 1.42768 0.91706 0.83675 0.85353 0.81252 0.89336 0.87185 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.00 13.22 21.65 0.29 -52.72 15 2 C 0.02 1.28 5.49 84.86 0.47 1.74 15 3 Si 1.00 42.66 29.55 68.60 2.03 44.69 15 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 15 5 H -0.27 -11.36 7.11 99.48 0.71 -10.66 15 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 7 C -0.55 -30.34 9.49 67.95 0.64 -29.69 15 8 H 0.07 3.93 7.80 -2.91 -0.02 3.91 15 9 S -0.07 -3.70 18.74 -56.49 -1.06 -4.76 15 10 C 0.16 6.50 3.92 169.40 0.66 7.16 15 11 H 0.07 3.04 8.13 -2.39 -0.02 3.02 15 12 N -0.48 -18.15 8.18 -181.70 -1.49 -19.64 15 13 N -0.50 -15.04 8.14 -179.05 -1.46 -16.50 15 14 C 0.32 9.16 5.29 239.98 1.27 10.43 15 15 H 0.13 2.88 8.14 -2.39 -0.02 2.86 15 16 N -0.68 -18.09 7.55 -507.65 -3.83 -21.92 15 17 C 0.18 4.91 8.42 169.31 1.43 6.34 15 18 N -0.50 -18.55 7.49 -189.36 -1.42 -19.97 15 19 N -0.31 -11.57 6.54 -498.38 -3.26 -14.83 15 20 H 0.27 14.89 8.31 -92.71 -0.77 14.12 15 21 H 0.35 12.66 9.08 -203.47 -1.85 10.81 15 22 H 0.33 8.20 9.07 -203.47 -1.85 6.36 15 23 H 0.37 7.09 8.92 -89.70 -0.80 6.29 15 24 H 0.09 1.98 8.14 -2.39 -0.02 1.96 15 25 H 0.11 2.67 8.14 -2.39 -0.02 2.65 15 26 H 0.34 14.40 6.34 -211.30 -1.34 13.06 15 Total: -1.00 -65.61 235.44 -10.31 -75.92 By element: Atomic # 1 Polarization: 38.34 SS G_CDS: -4.58 Total: 33.75 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 4.47 Total: -4.02 kcal Atomic # 7 Polarization: -134.41 SS G_CDS: -11.17 Total: -145.58 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.06 Total: -4.76 kcal Total: -65.61 -10.31 -75.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067818.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.861 kcal (2) G-P(sol) polarization free energy of solvation -65.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds