Wall clock time and date at job start Mon Mar 30 2020 02:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99675 * 359.72032 * 7 2 1 9 9 C 1.50695 * 119.99721 * 179.97438 * 7 2 1 10 10 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 11 11 O 1.42901 * 109.47310 * 60.00063 * 9 7 2 12 12 C 1.50707 * 109.47014 * 179.97438 * 9 7 2 13 13 C 1.37789 * 120.11400 * 264.72768 * 12 9 7 14 14 C 1.38786 * 120.66260 * 179.76664 * 13 12 9 15 15 C 1.36657 * 120.53255 * 0.50912 * 14 13 12 16 16 C 1.39597 * 119.76158 * 359.74616 * 15 14 13 17 17 C 1.46494 * 134.03761 * 179.97438 * 16 15 14 18 18 C 1.34235 * 107.00095 * 180.02562 * 17 16 15 19 19 N 1.36834 * 109.93425 * 0.02562 * 18 17 16 20 20 H 0.97004 * 125.06336 * 180.02562 * 19 18 17 21 21 C 1.37691 * 109.87578 * 359.97438 * 19 18 17 22 22 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 23 23 H 0.96708 * 113.99953 * 59.99368 * 11 9 7 24 24 H 1.08003 * 119.66408 * 0.02562 * 13 12 9 25 25 H 1.07999 * 119.73391 * 180.28577 * 14 13 12 26 26 H 1.07998 * 120.12335 * 179.72710 * 15 14 13 27 27 H 1.07996 * 126.49926 * 0.05017 * 17 16 15 28 28 H 1.07999 * 125.03295 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0036 9 6 3.5115 -1.1941 -0.0011 10 1 3.8745 -0.6801 -0.8911 11 8 3.9883 -0.5207 1.1656 12 6 4.0139 -2.6150 -0.0010 13 6 4.3481 -3.2300 1.1859 14 6 4.8073 -4.5396 1.1997 15 6 4.9459 -5.2390 0.0339 16 6 4.6181 -4.6337 -1.1806 17 6 4.6438 -5.0739 -2.5775 18 6 4.2101 -4.0443 -3.3216 19 7 3.9092 -2.9803 -2.5156 20 1 3.5768 -2.1232 -2.8251 21 6 4.1475 -3.3079 -1.1996 22 1 -0.4850 0.8401 0.0004 23 1 3.7032 -0.9244 1.9969 24 1 4.2477 -2.6888 2.1151 25 1 5.0606 -5.0085 2.1390 26 1 5.3080 -6.2563 0.0519 27 1 4.9527 -6.0432 -2.9400 28 1 4.1138 -4.0540 -4.3973 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535750311.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:19 Heat of formation + Delta-G solvation = -14.617269 kcal Electronic energy + Delta-G solvation = -14138.760218 eV Core-core repulsion = 11733.114552 eV Total energy + Delta-G solvation = -2405.645666 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.02730 -38.71896 -36.97009 -34.50578 -32.95877 -30.62744 -29.49874 -28.83340 -24.92171 -22.73412 -22.34393 -21.04618 -19.59078 -18.72780 -17.09457 -17.00822 -16.60523 -15.73150 -15.40300 -15.23213 -14.92187 -14.53115 -13.91206 -13.77994 -13.45476 -13.09440 -12.92225 -12.71267 -12.29794 -12.19155 -11.66075 -11.31334 -10.88273 -10.46227 -10.22629 -9.02054 -8.44708 -8.37547 -6.56372 0.36011 0.84498 1.34630 1.41670 1.70876 1.95463 2.38225 2.44710 2.95902 3.09830 3.92331 3.94897 4.09732 4.25948 4.37929 4.54448 4.62255 4.85179 4.97483 5.08844 5.24976 5.29669 5.37227 5.76764 5.80695 5.95244 6.00581 6.06441 6.40279 6.56516 6.77354 7.06333 7.25010 8.73979 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.034978 B = 0.010409 C = 0.009090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.307784 B = 2689.364486 C = 3079.511241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.033 3.967 3 Si 0.937 3.063 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.208 1.208 7 C -0.551 4.551 8 H 0.027 0.973 9 C 0.241 3.759 10 H 0.052 0.948 11 O -0.578 6.578 12 C -0.107 4.107 13 C -0.123 4.123 14 C -0.144 4.144 15 C -0.097 4.097 16 C -0.133 4.133 17 C -0.227 4.227 18 C 0.054 3.946 19 N -0.596 5.596 20 H 0.418 0.582 21 C 0.072 3.928 22 H 0.269 0.731 23 H 0.370 0.630 24 H 0.130 0.870 25 H 0.148 0.852 26 H 0.145 0.855 27 H 0.171 0.829 28 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.807 -7.553 -3.395 13.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.168 4.168 3 Si 0.760 3.240 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.130 1.130 7 C -0.589 4.589 8 H 0.046 0.954 9 C 0.183 3.817 10 H 0.070 0.930 11 O -0.386 6.386 12 C -0.110 4.110 13 C -0.142 4.142 14 C -0.162 4.162 15 C -0.116 4.116 16 C -0.138 4.138 17 C -0.252 4.252 18 C -0.073 4.073 19 N -0.198 5.198 20 H 0.254 0.746 21 C -0.036 4.036 22 H 0.078 0.922 23 H 0.219 0.781 24 H 0.148 0.852 25 H 0.165 0.835 26 H 0.163 0.837 27 H 0.188 0.812 28 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 10.897 -6.976 -3.906 13.515 hybrid contribution -0.938 0.897 0.217 1.316 sum 9.960 -6.079 -3.689 12.237 Atomic orbital electron populations 1.70079 1.08478 1.28553 1.50285 1.25858 0.95256 1.03401 0.92252 0.86009 0.81843 0.77383 0.78724 1.20617 1.22027 1.13047 1.21521 0.91094 0.92902 1.53351 0.95449 1.18372 0.91027 0.86310 0.85954 0.93005 1.86613 1.77660 1.57454 1.16874 1.19923 1.01338 0.97906 0.91831 1.20802 1.00821 0.96014 0.96556 1.20868 1.02297 0.94027 0.99055 1.20508 1.00420 1.00372 0.90266 1.19717 1.05146 0.93290 0.95670 1.21970 1.12328 1.01094 0.89789 1.22520 1.00466 0.86251 0.98031 1.42034 1.57569 1.15668 1.04559 0.74558 1.18312 1.03747 0.96012 0.85492 0.92233 0.78066 0.85240 0.83473 0.83705 0.81180 0.77481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.70 13.96 21.45 0.30 -57.40 15 2 C 0.03 1.87 5.47 84.66 0.46 2.33 15 3 Si 0.94 44.35 26.99 68.60 1.85 46.21 15 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 15 6 H -0.21 -9.51 5.31 99.48 0.53 -8.98 15 7 C -0.55 -31.17 9.33 25.60 0.24 -30.93 15 8 H 0.03 1.76 7.98 -2.91 -0.02 1.74 15 9 C 0.24 11.45 2.56 29.10 0.07 11.52 15 10 H 0.05 2.48 7.55 -2.39 -0.02 2.46 15 11 O -0.58 -25.83 9.79 -148.98 -1.46 -27.28 15 12 C -0.11 -4.64 5.02 -19.76 -0.10 -4.74 15 13 C -0.12 -4.63 9.29 22.29 0.21 -4.43 15 14 C -0.14 -4.57 9.97 22.03 0.22 -4.35 15 15 C -0.10 -3.05 10.05 22.23 0.22 -2.83 15 16 C -0.13 -4.72 6.37 -20.20 -0.13 -4.84 15 17 C -0.23 -6.41 11.08 23.51 0.26 -6.15 15 18 C 0.05 1.44 11.81 83.00 0.98 2.42 15 19 N -0.60 -20.61 6.07 -187.62 -1.14 -21.75 15 20 H 0.42 13.87 8.96 -92.71 -0.83 13.04 15 21 C 0.07 2.90 6.97 39.03 0.27 3.17 15 22 H 0.27 15.51 8.31 -92.71 -0.77 14.74 15 23 H 0.37 14.62 7.32 -74.05 -0.54 14.08 15 24 H 0.13 4.43 6.38 -2.91 -0.02 4.41 15 25 H 0.15 3.58 8.06 -2.91 -0.02 3.55 15 26 H 0.15 3.48 8.06 -2.91 -0.02 3.46 15 27 H 0.17 3.58 8.06 -2.91 -0.02 3.56 15 28 H 0.21 3.44 8.06 -2.91 -0.02 3.42 15 Total: -1.00 -70.76 242.98 1.91 -68.85 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: -0.36 Total: 30.19 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 2.71 Total: -38.82 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -0.84 Total: -79.14 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -1.46 Total: -27.28 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.85 Total: 46.21 kcal Total: -70.76 1.91 -68.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535750311.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.237 kcal (2) G-P(sol) polarization free energy of solvation -70.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds