Wall clock time and date at job start Mon Mar 30 2020 02:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00110 * 2 1 4 4 H 1.48497 * 109.47318 * 239.99447 * 3 2 1 5 5 H 1.48497 * 109.47249 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.47127 * 119.99686 * 3 2 1 7 7 C 1.37878 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00485 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00003 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46909 * 300.00041 * 9 7 2 11 11 O 1.42902 * 109.46875 * 59.99813 * 9 7 2 12 12 C 1.50697 * 109.47297 * 179.97438 * 9 7 2 13 13 C 1.38831 * 119.73592 * 279.96314 * 12 9 7 14 14 C 1.37745 * 120.66453 * 179.97438 * 13 12 9 15 15 C 1.39127 * 119.78040 * 0.03892 * 14 13 12 16 16 N 1.37686 * 133.50864 * 179.97438 * 15 14 13 17 17 H 0.97005 * 125.06662 * 0.05933 * 16 15 14 18 18 C 1.36829 * 109.87533 * 180.02562 * 16 15 14 19 19 C 1.34233 * 109.93191 * 359.97438 * 18 16 15 20 20 C 1.40661 * 119.33423 * 359.97438 * 15 14 13 21 21 C 1.36628 * 119.73324 * 100.00090 * 12 9 7 22 22 H 0.97004 * 119.99941 * 359.97438 * 1 2 3 23 23 H 0.96697 * 114.00437 * 60.00243 * 11 9 7 24 24 H 1.07991 * 119.66911 * 0.02562 * 13 12 9 25 25 H 1.08000 * 120.10958 * 180.02562 * 14 13 12 26 26 H 1.08003 * 125.03661 * 180.02562 * 18 16 15 27 27 H 1.07996 * 126.50850 * 180.02562 * 19 18 16 28 28 H 1.07997 * 120.11675 * 0.27778 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4298 -2.5751 -1.1666 12 6 2.2302 -3.6446 0.0005 13 6 2.8362 -4.0325 -1.1868 14 6 3.7345 -5.0765 -1.2087 15 6 4.0387 -5.7512 -0.0306 16 7 4.8709 -6.8061 0.2698 17 1 5.4247 -7.2791 -0.3710 18 6 4.8012 -7.0875 1.6071 19 6 3.9440 -6.2469 2.2074 20 6 3.4218 -5.3545 1.1697 21 6 2.5139 -4.2936 1.1689 22 1 -0.4850 0.8401 0.0004 23 1 0.9222 -2.5299 -1.9976 24 1 2.6016 -3.5100 -2.1023 25 1 4.2010 -5.3705 -2.1373 26 1 5.3546 -7.8694 2.1058 27 1 3.6879 -6.2313 3.2565 28 1 2.0348 -3.9896 2.0878 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535795434.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:50 Heat of formation + Delta-G solvation = 4.293526 kcal Electronic energy + Delta-G solvation = -13796.980336 eV Core-core repulsion = 11392.154703 eV Total energy + Delta-G solvation = -2404.825633 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.72886 -37.25182 -34.64699 -32.11518 -31.49063 -29.50216 -28.21656 -26.24132 -22.97487 -22.08569 -20.57142 -19.69563 -17.59092 -16.92235 -15.66860 -15.21059 -14.55705 -14.05803 -14.03232 -13.50152 -13.08768 -12.83969 -12.29275 -12.04147 -11.81694 -11.43560 -11.05369 -10.86802 -10.64673 -10.30249 -10.08326 -9.29690 -9.11198 -8.57698 -8.24829 -7.53689 -7.17389 -5.97416 -4.16266 1.67343 2.29103 3.08607 3.32145 3.36843 3.39767 3.44948 4.39219 4.60410 5.07778 5.24826 5.29605 5.54186 5.75163 5.86418 5.99316 6.16388 6.36987 6.44113 6.46186 6.65196 7.09252 7.13650 7.20791 7.27880 7.74933 7.82436 7.85650 7.92973 8.19495 8.86517 9.38082 9.59614 11.05590 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.045570 B = 0.007464 C = 0.007234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.294267 B = 3750.621834 C = 3869.485795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.079 3.921 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.562 4.562 8 H 0.057 0.943 9 C 0.262 3.738 10 H 0.066 0.934 11 O -0.561 6.561 12 C -0.093 4.093 13 C -0.081 4.081 14 C -0.142 4.142 15 C 0.076 3.924 16 N -0.603 5.603 17 H 0.408 0.592 18 C 0.034 3.966 19 C -0.205 4.205 20 C -0.108 4.108 21 C -0.078 4.078 22 H 0.261 0.739 23 H 0.344 0.656 24 H 0.122 0.878 25 H 0.110 0.890 26 H 0.162 0.838 27 H 0.140 0.860 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.559 -11.472 0.274 14.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.127 4.127 3 Si 0.718 3.282 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.600 4.600 8 H 0.075 0.925 9 C 0.204 3.796 10 H 0.083 0.917 11 O -0.364 6.364 12 C -0.094 4.094 13 C -0.100 4.100 14 C -0.163 4.163 15 C -0.029 4.029 16 N -0.207 5.207 17 H 0.244 0.756 18 C -0.092 4.092 19 C -0.231 4.231 20 C -0.113 4.113 21 C -0.097 4.097 22 H 0.071 0.929 23 H 0.189 0.811 24 H 0.140 0.860 25 H 0.128 0.872 26 H 0.180 0.820 27 H 0.158 0.842 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.972 -11.478 0.683 13.992 hybrid contribution 1.367 0.736 -0.582 1.658 sum 9.339 -10.742 0.102 14.235 Atomic orbital electron populations 1.70067 1.05917 1.26612 1.47028 1.25048 0.94713 0.99079 0.93854 0.86698 0.79681 0.83014 0.78771 1.20129 1.21212 1.20114 1.21551 0.93217 0.90673 1.54576 0.92468 1.18454 0.86692 0.87986 0.86438 0.91669 1.86607 1.38118 1.96320 1.15346 1.20882 0.98763 0.97508 0.92266 1.20657 0.95464 0.95386 0.98525 1.19901 1.02744 0.98986 0.94622 1.18198 0.96462 0.92330 0.95914 1.41662 1.40207 1.30424 1.08407 0.75606 1.21625 1.02462 1.01838 0.83255 1.21672 1.03383 0.99504 0.98556 1.19218 1.00663 0.98816 0.92571 1.20129 0.97234 0.94034 0.98309 0.92873 0.81124 0.85993 0.87151 0.82036 0.84178 0.86412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.46 12.84 55.43 0.71 -24.75 15 2 C 0.08 2.22 5.40 -17.82 -0.10 2.13 15 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.56 -15.62 8.74 -34.44 -0.30 -15.92 15 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 15 9 C 0.26 6.80 3.05 -29.03 -0.09 6.71 15 10 H 0.07 1.84 7.97 -51.93 -0.41 1.42 15 11 O -0.56 -14.65 12.58 -35.23 -0.44 -15.10 15 12 C -0.09 -2.07 4.88 -104.99 -0.51 -2.58 15 13 C -0.08 -1.60 9.28 -39.54 -0.37 -1.96 15 14 C -0.14 -2.44 10.08 -39.43 -0.40 -2.83 15 15 C 0.08 1.31 7.28 -83.99 -0.61 0.70 15 16 N -0.60 -7.91 6.07 -10.65 -0.06 -7.97 15 17 H 0.41 3.88 8.96 -40.82 -0.37 3.51 15 18 C 0.03 0.42 11.81 -16.73 -0.20 0.22 15 19 C -0.21 -3.11 11.08 -37.67 -0.42 -3.53 15 20 C -0.11 -2.03 6.37 -105.14 -0.67 -2.70 15 21 C -0.08 -1.63 9.65 -39.64 -0.38 -2.02 15 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 23 H 0.34 7.87 7.46 45.56 0.34 8.21 15 24 H 0.12 2.23 6.75 -52.49 -0.35 1.87 15 25 H 0.11 1.55 8.06 -52.49 -0.42 1.12 15 26 H 0.16 1.30 8.06 -52.48 -0.42 0.88 15 27 H 0.14 1.82 8.06 -52.49 -0.42 1.40 15 28 H 0.12 2.36 8.01 -52.49 -0.42 1.94 15 LS Contribution 249.34 15.07 3.76 3.76 Total: -1.00 -32.50 249.34 -7.12 -39.62 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -2.02 Total: 9.90 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -4.04 Total: -21.79 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.65 Total: -32.72 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.44 Total: -15.10 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.50 -7.12 -39.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535795434.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.913 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds