Wall clock time and date at job start Mon Mar 30 2020 02:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35926 * 116.99591 * 2 1 4 4 C 1.39174 * 119.74682 * 359.97438 * 3 2 1 5 5 C 1.36702 * 120.45869 * 180.02562 * 4 3 2 6 6 C 1.39535 * 119.84918 * 359.97438 * 5 4 3 7 7 C 1.46704 * 133.90957 * 179.97438 * 6 5 4 8 8 C 1.34285 * 107.06387 * 180.28763 * 7 6 5 9 9 N 1.37071 * 109.92943 * 359.56821 * 8 7 6 10 10 C 1.37202 * 125.10283 * 180.18714 * 9 8 7 11 11 H 1.08003 * 119.99655 * 201.22277 * 10 9 8 12 12 C 1.38832 * 120.00170 * 21.22820 * 10 9 8 13 13 N 1.31456 * 119.99917 * 10.69422 * 12 10 9 14 14 Si 1.86800 * 120.00128 * 190.69685 * 12 10 9 15 15 H 1.48497 * 109.46892 * 59.99558 * 14 12 10 16 16 H 1.48494 * 109.47048 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46959 * 299.99814 * 14 12 10 18 18 C 1.38124 * 109.79727 * 0.44469 * 9 8 7 19 19 C 1.38427 * 119.73656 * 180.02562 * 3 2 1 20 20 H 1.08999 * 109.47140 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.47228 * 300.00052 * 1 2 3 22 22 H 1.08999 * 109.47557 * 60.00128 * 1 2 3 23 23 H 1.08006 * 119.76829 * 0.02562 * 4 3 2 24 24 H 1.08003 * 120.07686 * 179.97438 * 5 4 3 25 25 H 1.07998 * 126.46544 * 0.02562 * 7 6 5 26 26 H 1.08007 * 125.03830 * 179.73985 * 8 7 6 27 27 H 0.96999 * 120.00020 * 180.02562 * 13 12 10 28 28 H 1.07991 * 120.13831 * 0.02562 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2828 2.3749 -0.0005 5 6 1.8881 3.6006 -0.0011 6 6 3.2808 3.6874 -0.0005 7 6 4.2305 4.8055 -0.0013 8 6 5.4640 4.2748 -0.0066 9 7 5.3839 2.9064 0.0004 10 6 6.4584 2.0532 0.0013 11 1 6.3380 1.0329 -0.3319 12 6 7.7003 2.5013 0.4306 13 7 7.8075 3.6663 1.0300 14 14 9.2190 1.4488 0.1563 15 1 9.4044 1.2171 -1.2987 16 1 10.4105 2.1475 0.7016 17 1 9.0494 0.1455 0.8474 18 6 4.0592 2.5153 0.0006 19 6 3.4287 1.2773 -0.0005 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 0.2047 2.3092 -0.0005 24 1 1.2898 4.4998 -0.0019 25 1 3.9841 5.8570 -0.0022 26 1 6.3831 4.8420 -0.0125 27 1 8.6752 3.9796 1.3297 28 1 4.0149 0.3704 -0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034414233.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:44 Heat of formation + Delta-G solvation = 20.189346 kcal Electronic energy + Delta-G solvation = -13907.426899 eV Core-core repulsion = 11503.290561 eV Total energy + Delta-G solvation = -2404.136338 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.08923 -38.50673 -35.17620 -32.93488 -30.91675 -29.00251 -27.58610 -26.27045 -24.72991 -21.70160 -20.34292 -19.81559 -17.89278 -16.44870 -15.59647 -15.19874 -15.16020 -14.99193 -14.17286 -13.32204 -12.97645 -12.67737 -12.62916 -11.91698 -11.80761 -11.56701 -11.39169 -11.17035 -10.69886 -10.62203 -10.54667 -9.99358 -9.79830 -9.08476 -8.39370 -7.15333 -6.78587 -6.39936 -4.27695 2.18030 2.62407 3.03826 3.05328 3.08049 3.76744 3.92307 4.07500 4.76462 4.96604 5.05793 5.39767 5.47802 5.65892 5.69012 5.83312 6.25170 6.30034 6.46936 6.62722 6.96625 7.03227 7.08208 7.18984 7.27299 7.48402 7.58211 7.76972 8.13850 8.27040 8.49038 9.01334 9.44761 10.30934 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.038675 B = 0.008740 C = 0.007232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.808201 B = 3203.075565 C = 3870.872552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.327 6.327 3 C 0.100 3.900 4 C -0.244 4.244 5 C -0.046 4.046 6 C -0.145 4.145 7 C -0.276 4.276 8 C 0.083 3.917 9 N -0.290 5.290 10 C -0.341 4.341 11 H 0.105 0.895 12 C 0.042 3.958 13 N -0.854 5.854 14 Si 0.940 3.060 15 H -0.267 1.267 16 H -0.278 1.278 17 H -0.268 1.268 18 C 0.084 3.916 19 C -0.144 4.144 20 H 0.088 0.912 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.111 0.889 24 H 0.108 0.892 25 H 0.124 0.876 26 H 0.171 0.829 27 H 0.279 0.721 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.848 -2.207 -1.637 7.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.242 6.242 3 C 0.055 3.945 4 C -0.264 4.264 5 C -0.065 4.065 6 C -0.151 4.151 7 C -0.300 4.300 8 C -0.050 4.050 9 N 0.046 4.954 10 C -0.468 4.468 11 H 0.123 0.877 12 C -0.166 4.166 13 N -0.487 5.487 14 Si 0.765 3.235 15 H -0.192 1.192 16 H -0.203 1.203 17 H -0.193 1.193 18 C -0.029 4.029 19 C -0.165 4.165 20 H 0.106 0.894 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.129 0.871 24 H 0.126 0.874 25 H 0.142 0.858 26 H 0.188 0.812 27 H 0.090 0.910 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.252 -2.460 -1.525 6.890 hybrid contribution 0.512 -0.245 0.054 0.570 sum -5.740 -2.705 -1.471 6.514 Atomic orbital electron populations 1.22834 0.79907 1.02475 1.00783 1.85962 1.20078 1.27941 1.90190 1.18228 0.91135 0.83249 1.01895 1.20358 0.98284 0.92372 1.15393 1.19812 0.92606 0.95951 0.98109 1.19008 0.92377 0.93284 1.10401 1.21274 0.91430 0.96243 1.21083 1.22095 0.98510 0.82997 1.01447 1.40197 1.02301 1.04995 1.47864 1.19810 0.86385 0.95913 1.44688 0.87701 1.25488 0.99994 0.97149 0.93936 1.69894 1.26320 1.19356 1.33113 0.85772 0.79018 0.79414 0.79312 1.19211 1.20276 1.19252 1.17909 0.84870 0.93450 1.06703 1.18817 0.90675 0.95616 1.11395 0.89398 0.93361 0.93366 0.87139 0.87410 0.85819 0.81198 0.91015 0.86792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 9.80 101.05 0.99 1.46 15 2 O -0.33 -6.09 10.49 -19.51 -0.20 -6.30 15 3 C 0.10 2.11 6.68 -39.16 -0.26 1.84 15 4 C -0.24 -4.72 8.96 -39.79 -0.36 -5.08 15 5 C -0.05 -0.95 10.05 -39.65 -0.40 -1.35 15 6 C -0.14 -3.48 6.37 -105.07 -0.67 -4.15 15 7 C -0.28 -6.55 11.09 -37.56 -0.42 -6.97 15 8 C 0.08 2.13 9.89 -16.60 -0.16 1.96 15 9 N -0.29 -7.84 2.92 -59.73 -0.17 -8.02 15 10 C -0.34 -9.10 9.93 -14.93 -0.15 -9.25 15 11 H 0.11 2.69 7.85 -52.48 -0.41 2.27 15 12 C 0.04 1.07 5.35 -17.49 -0.09 0.98 15 13 N -0.85 -22.26 10.85 55.49 0.60 -21.66 15 14 Si 0.94 19.27 29.57 -169.99 -5.03 14.24 15 15 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 16 H -0.28 -5.57 7.11 56.52 0.40 -5.17 15 17 H -0.27 -5.43 7.11 56.52 0.40 -5.02 15 18 C 0.08 2.15 6.75 -83.84 -0.57 1.59 15 19 C -0.14 -3.40 9.89 -39.25 -0.39 -3.79 15 20 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 21 H 0.05 0.59 7.65 -51.92 -0.40 0.19 15 22 H 0.05 0.58 7.64 -51.93 -0.40 0.18 15 23 H 0.11 1.76 6.24 -52.48 -0.33 1.43 15 24 H 0.11 1.88 8.06 -52.48 -0.42 1.46 15 25 H 0.12 2.55 8.06 -52.49 -0.42 2.12 15 26 H 0.17 4.36 6.35 -52.48 -0.33 4.03 15 27 H 0.28 6.73 8.31 -40.82 -0.34 6.39 15 28 H 0.11 2.63 8.06 -52.49 -0.42 2.20 15 LS Contribution 246.26 15.07 3.71 3.71 Total: -1.00 -28.94 246.26 -6.26 -35.19 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -2.69 Total: 5.58 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -2.47 Total: -22.75 kcal Atomic # 7 Polarization: -30.10 SS G_CDS: 0.43 Total: -29.67 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.20 Total: -6.30 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.94 -6.26 -35.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034414233.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.384 kcal (2) G-P(sol) polarization free energy of solvation -28.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds