Wall clock time and date at job start Mon Mar 30 2020 02:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 110.56393 * 2 1 4 4 H 1.08003 * 119.99989 * 235.21596 * 3 2 1 5 5 C 1.37878 * 120.00111 * 55.21370 * 3 2 1 6 6 N 1.31512 * 119.99929 * 5.19433 * 5 3 2 7 7 Si 1.86797 * 120.00045 * 185.19456 * 5 3 2 8 8 H 1.48497 * 109.47374 * 85.00249 * 7 5 3 9 9 H 1.48501 * 109.47029 * 205.00593 * 7 5 3 10 10 H 1.48503 * 109.47186 * 325.00016 * 7 5 3 11 11 C 1.51131 * 110.50928 * 237.32331 * 2 1 3 12 12 C 1.37684 * 132.85078 * 61.35590 * 11 2 1 13 13 C 1.38390 * 119.91501 * 180.02562 * 12 11 2 14 14 C 1.38304 * 119.82695 * 359.97438 * 13 12 11 15 15 C 1.37941 * 120.37611 * 0.03186 * 14 13 12 16 16 C 1.38904 * 106.34548 * 241.60152 * 11 2 1 17 17 N 1.39533 * 110.22797 * 0.13719 * 16 11 2 18 18 C 1.34373 * 112.24312 * 0.22913 * 17 16 11 19 19 O 1.21296 * 126.43908 * 179.97438 * 18 17 16 20 20 H 1.09004 * 109.47270 * 176.15626 * 1 2 3 21 21 H 1.08996 * 109.46992 * 296.14923 * 1 2 3 22 22 H 1.08991 * 109.47385 * 56.15409 * 1 2 3 23 23 H 0.97000 * 120.00323 * 180.02562 * 6 5 3 24 24 H 1.08001 * 120.03965 * 0.02562 * 12 11 2 25 25 H 1.08000 * 120.08542 * 179.97438 * 13 12 11 26 26 H 1.08002 * 119.81383 * 179.97438 * 14 13 12 27 27 H 1.07994 * 119.93396 * 179.97438 * 15 14 13 28 28 H 0.96998 * 123.88115 * 180.20742 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0593 1.4109 0.0000 4 1 2.7486 1.7291 -0.7682 5 6 1.6637 2.2957 0.9807 6 7 0.9063 1.8819 1.9729 7 14 2.2034 4.0822 0.8998 8 1 1.2670 4.8436 0.0346 9 1 2.1981 4.6632 2.2664 10 1 3.5743 4.1600 0.3342 11 6 2.0595 -0.7642 -1.1915 12 6 1.9344 -0.5836 -2.5507 13 6 2.5456 -1.4667 -3.4234 14 6 3.2806 -2.5275 -2.9261 15 6 3.4074 -2.7109 -1.5648 16 6 2.7902 -1.8289 -0.6797 17 7 2.7654 -1.8049 0.7152 18 6 2.0468 -0.7750 1.1935 19 8 1.8558 -0.5108 2.3618 20 1 -0.3634 -1.0254 -0.0689 21 1 -0.3633 0.4529 0.9225 22 1 -0.3634 0.5723 -0.8534 23 1 0.6276 2.5044 2.6627 24 1 1.3600 0.2462 -2.9352 25 1 2.4489 -1.3279 -4.4901 26 1 3.7571 -3.2168 -3.6074 27 1 3.9827 -3.5419 -1.1843 28 1 3.2149 -2.4568 1.2754 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035904630.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:46 Heat of formation + Delta-G solvation = 2.913759 kcal Electronic energy + Delta-G solvation = -14491.489278 eV Core-core repulsion = 12086.603814 eV Total energy + Delta-G solvation = -2404.885464 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.49167 -37.28867 -34.50994 -33.84895 -31.30659 -29.18821 -28.01101 -25.35982 -23.84951 -21.78792 -20.48162 -19.32343 -17.11717 -16.13229 -15.74797 -15.02515 -14.51752 -14.05533 -13.69019 -13.30264 -12.82866 -12.71879 -12.10490 -11.81188 -11.46571 -11.10086 -10.92817 -10.79962 -10.65347 -10.32709 -9.93273 -9.64534 -9.37717 -8.66632 -8.30360 -8.14911 -7.18259 -6.00425 -4.16262 1.93634 2.01638 3.28668 3.35570 3.38007 3.85663 4.00021 4.39984 4.54957 5.15766 5.31206 5.49603 5.54465 5.91206 5.97450 6.04334 6.27333 6.53704 6.70306 6.83206 6.90614 7.02404 7.11611 7.32974 7.43444 7.64745 7.81842 7.89786 7.98676 8.18226 8.80694 9.41082 9.47669 10.98004 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.034585 B = 0.011753 C = 0.010069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.398635 B = 2381.831065 C = 2780.273935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.086 3.914 3 C -0.521 4.521 4 H 0.066 0.934 5 C 0.071 3.929 6 N -0.838 5.838 7 Si 0.897 3.103 8 H -0.277 1.277 9 H -0.286 1.286 10 H -0.274 1.274 11 C -0.097 4.097 12 C -0.069 4.069 13 C -0.158 4.158 14 C -0.106 4.106 15 C -0.160 4.160 16 C 0.146 3.854 17 N -0.684 5.684 18 C 0.526 3.474 19 O -0.474 6.474 20 H 0.013 0.987 21 H 0.093 0.907 22 H 0.044 0.956 23 H 0.263 0.737 24 H 0.122 0.878 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.198 -6.394 -7.607 10.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 C -0.558 4.558 4 H 0.085 0.915 5 C -0.136 4.136 6 N -0.471 5.471 7 Si 0.724 3.276 8 H -0.202 1.202 9 H -0.211 1.211 10 H -0.199 1.199 11 C -0.100 4.100 12 C -0.087 4.087 13 C -0.177 4.177 14 C -0.125 4.125 15 C -0.182 4.182 16 C 0.048 3.952 17 N -0.328 5.328 18 C 0.315 3.685 19 O -0.344 6.344 20 H 0.032 0.968 21 H 0.112 0.888 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.140 0.860 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.130 0.870 28 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.879 -6.042 -6.665 9.190 hybrid contribution 0.753 0.500 0.286 0.948 sum 2.632 -5.542 -6.379 8.851 Atomic orbital electron populations 1.21609 0.94410 0.97617 1.03975 1.17752 0.94684 0.94481 0.84856 1.20546 1.30030 0.91771 1.13496 0.91547 1.25082 0.94915 0.98928 0.94725 1.70054 1.32873 1.34212 1.09967 0.86534 0.79203 0.84550 0.77322 1.20250 1.21146 1.19886 1.20519 0.98858 0.95423 0.95214 1.20272 0.98657 0.98504 0.91307 1.20899 1.01207 0.96683 0.98920 1.20594 0.99714 0.98243 0.93917 1.20195 1.04759 1.00603 0.92613 1.18304 0.97263 0.96095 0.83585 1.44407 1.52910 1.30614 1.04855 1.22011 0.76663 0.78081 0.91769 1.90686 1.57585 1.67573 1.18522 0.96795 0.88848 0.93650 0.92685 0.85980 0.86574 0.86569 0.86964 0.77495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 8.27 37.16 0.31 -2.54 15 2 C 0.09 2.14 0.66 -157.41 -0.10 2.04 15 3 C -0.52 -14.14 8.11 -34.44 -0.28 -14.41 15 4 H 0.07 1.79 7.77 -52.48 -0.41 1.38 15 5 C 0.07 1.95 5.18 -17.82 -0.09 1.86 15 6 N -0.84 -24.03 9.27 55.43 0.51 -23.51 15 7 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 15 8 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 9 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 11 C -0.10 -2.09 4.95 -104.37 -0.52 -2.61 15 12 C -0.07 -1.27 10.04 -39.73 -0.40 -1.67 15 13 C -0.16 -2.42 10.07 -39.50 -0.40 -2.82 15 14 C -0.11 -1.55 10.02 -39.67 -0.40 -1.95 15 15 C -0.16 -2.59 10.07 -39.27 -0.40 -2.98 15 16 C 0.15 2.90 7.11 -83.69 -0.60 2.30 15 17 N -0.68 -14.32 5.88 -9.69 -0.06 -14.37 15 18 C 0.53 13.45 7.20 -10.82 -0.08 13.37 15 19 O -0.47 -13.67 16.04 5.54 0.09 -13.59 15 20 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 15 21 H 0.09 2.49 6.13 -51.93 -0.32 2.17 15 22 H 0.04 1.02 8.14 -51.93 -0.42 0.59 15 23 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 24 H 0.12 2.13 8.06 -52.49 -0.42 1.70 15 25 H 0.12 1.43 8.06 -52.49 -0.42 1.01 15 26 H 0.12 1.32 8.06 -52.49 -0.42 0.89 15 27 H 0.11 1.51 8.06 -52.49 -0.42 1.08 15 28 H 0.39 6.87 8.96 -40.82 -0.37 6.51 15 LS Contribution 243.42 15.07 3.67 3.67 Total: -1.00 -30.77 243.42 -6.52 -37.28 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -2.76 Total: 3.80 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -2.95 Total: -9.40 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.46 Total: -37.89 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.09 Total: -13.59 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -30.77 -6.52 -37.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035904630.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.198 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds