Wall clock time and date at job start Mon Mar 30 2020 02:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 110.56393 * 2 1 4 4 H 1.08003 * 119.99989 * 235.21596 * 3 2 1 5 5 C 1.37878 * 120.00111 * 55.21370 * 3 2 1 6 6 N 1.31512 * 119.99929 * 5.19433 * 5 3 2 7 7 Si 1.86797 * 120.00045 * 185.19456 * 5 3 2 8 8 H 1.48497 * 109.47374 * 85.00249 * 7 5 3 9 9 H 1.48501 * 109.47029 * 205.00593 * 7 5 3 10 10 H 1.48503 * 109.47186 * 325.00016 * 7 5 3 11 11 C 1.51131 * 110.50928 * 237.32331 * 2 1 3 12 12 C 1.37684 * 132.85078 * 61.35590 * 11 2 1 13 13 C 1.38390 * 119.91501 * 180.02562 * 12 11 2 14 14 C 1.38304 * 119.82695 * 359.97438 * 13 12 11 15 15 C 1.37941 * 120.37611 * 0.03186 * 14 13 12 16 16 C 1.38904 * 106.34548 * 241.60152 * 11 2 1 17 17 N 1.39533 * 110.22797 * 0.13719 * 16 11 2 18 18 C 1.34373 * 112.24312 * 0.22913 * 17 16 11 19 19 O 1.21296 * 126.43908 * 179.97438 * 18 17 16 20 20 H 1.09004 * 109.47270 * 176.15626 * 1 2 3 21 21 H 1.08996 * 109.46992 * 296.14923 * 1 2 3 22 22 H 1.08991 * 109.47385 * 56.15409 * 1 2 3 23 23 H 0.97000 * 120.00323 * 180.02562 * 6 5 3 24 24 H 1.08001 * 120.03965 * 0.02562 * 12 11 2 25 25 H 1.08000 * 120.08542 * 179.97438 * 13 12 11 26 26 H 1.08002 * 119.81383 * 179.97438 * 14 13 12 27 27 H 1.07994 * 119.93396 * 179.97438 * 15 14 13 28 28 H 0.96998 * 123.88115 * 180.20742 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0593 1.4109 0.0000 4 1 2.7486 1.7291 -0.7682 5 6 1.6637 2.2957 0.9807 6 7 0.9063 1.8819 1.9729 7 14 2.2034 4.0822 0.8998 8 1 1.2670 4.8436 0.0346 9 1 2.1981 4.6632 2.2664 10 1 3.5743 4.1600 0.3342 11 6 2.0595 -0.7642 -1.1915 12 6 1.9344 -0.5836 -2.5507 13 6 2.5456 -1.4667 -3.4234 14 6 3.2806 -2.5275 -2.9261 15 6 3.4074 -2.7109 -1.5648 16 6 2.7902 -1.8289 -0.6797 17 7 2.7654 -1.8049 0.7152 18 6 2.0468 -0.7750 1.1935 19 8 1.8558 -0.5108 2.3618 20 1 -0.3634 -1.0254 -0.0689 21 1 -0.3633 0.4529 0.9225 22 1 -0.3634 0.5723 -0.8534 23 1 0.6276 2.5044 2.6627 24 1 1.3600 0.2462 -2.9352 25 1 2.4489 -1.3279 -4.4901 26 1 3.7571 -3.2168 -3.6074 27 1 3.9827 -3.5419 -1.1843 28 1 3.2149 -2.4568 1.2754 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035904630.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:46 Heat of formation + Delta-G solvation = -17.375026 kcal Electronic energy + Delta-G solvation = -14492.369066 eV Core-core repulsion = 12086.603814 eV Total energy + Delta-G solvation = -2405.765252 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.12964 -38.93725 -36.22469 -35.72887 -33.12409 -30.66722 -29.52695 -27.39345 -25.62230 -23.21383 -21.99450 -21.16387 -18.72991 -18.05564 -17.34835 -16.71511 -16.28329 -15.87552 -15.20165 -14.70143 -14.53583 -14.49549 -13.74110 -13.56093 -13.06680 -12.94898 -12.75198 -12.57311 -12.33249 -12.10805 -11.59851 -11.49787 -11.11881 -10.68970 -10.27054 -9.53650 -8.69859 -8.05230 -6.28100 0.54158 0.67148 1.41120 1.41997 1.51531 2.02299 2.40659 2.43527 3.13070 3.15641 3.82805 4.17059 4.23252 4.37596 4.63659 4.73210 4.78218 4.91782 5.05930 5.18430 5.32492 5.45966 5.57710 5.73096 5.86185 5.90298 5.98172 6.15544 6.24997 6.41486 6.74878 7.38777 7.56925 8.91154 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.034585 B = 0.011753 C = 0.010069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.398635 B = 2381.831065 C = 2780.273935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.070 3.930 3 C -0.533 4.533 4 H 0.061 0.939 5 C 0.022 3.978 6 N -0.868 5.868 7 Si 0.958 3.042 8 H -0.264 1.264 9 H -0.288 1.288 10 H -0.271 1.271 11 C -0.131 4.131 12 C -0.083 4.083 13 C -0.142 4.142 14 C -0.094 4.094 15 C -0.147 4.147 16 C 0.116 3.884 17 N -0.673 5.673 18 C 0.515 3.485 19 O -0.524 6.524 20 H 0.024 0.976 21 H 0.061 0.939 22 H 0.051 0.949 23 H 0.259 0.741 24 H 0.122 0.878 25 H 0.155 0.845 26 H 0.164 0.836 27 H 0.145 0.855 28 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.610 -7.642 -10.478 13.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.066 3.934 3 C -0.571 4.571 4 H 0.079 0.921 5 C -0.182 4.182 6 N -0.502 5.502 7 Si 0.782 3.218 8 H -0.189 1.189 9 H -0.214 1.214 10 H -0.195 1.195 11 C -0.133 4.133 12 C -0.102 4.102 13 C -0.161 4.161 14 C -0.112 4.112 15 C -0.168 4.168 16 C 0.019 3.981 17 N -0.318 5.318 18 C 0.305 3.695 19 O -0.398 6.398 20 H 0.043 0.957 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.140 0.860 25 H 0.172 0.828 26 H 0.181 0.819 27 H 0.162 0.838 28 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.312 -7.326 -9.600 12.522 hybrid contribution 0.360 0.767 1.010 1.319 sum 3.672 -6.559 -8.590 11.414 Atomic orbital electron populations 1.21440 0.94718 0.97970 1.02440 1.17756 0.94702 0.94100 0.86803 1.20812 1.29753 0.93393 1.13098 0.92125 1.25862 0.95103 1.02838 0.94436 1.70238 1.34209 1.35144 1.10575 0.85586 0.79018 0.79976 0.77177 1.18887 1.21434 1.19536 1.20411 1.01037 0.96338 0.95544 1.20483 0.99527 0.99653 0.90534 1.21357 0.99051 0.95315 1.00363 1.21183 0.98144 0.98103 0.93786 1.20652 1.03238 1.00069 0.92830 1.18604 0.99204 0.97449 0.82841 1.44000 1.52046 1.29709 1.06014 1.22086 0.77006 0.79147 0.91264 1.90636 1.59716 1.69349 1.20111 0.95658 0.92025 0.93038 0.93206 0.85982 0.82754 0.81853 0.83757 0.75794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.37 8.27 71.98 0.60 -4.77 15 2 C 0.07 3.58 0.66 -54.06 -0.04 3.54 15 3 C -0.53 -29.64 8.11 25.60 0.21 -29.43 15 4 H 0.06 3.33 7.77 -2.91 -0.02 3.30 15 5 C 0.02 1.24 5.18 84.66 0.44 1.67 15 6 N -0.87 -51.91 9.27 21.45 0.20 -51.71 15 7 Si 0.96 44.26 29.54 68.60 2.03 46.28 15 8 H -0.26 -11.54 7.11 99.48 0.71 -10.83 15 9 H -0.29 -13.34 7.11 99.48 0.71 -12.63 15 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 11 C -0.13 -5.52 4.95 -19.70 -0.10 -5.62 15 12 C -0.08 -2.90 10.04 22.17 0.22 -2.68 15 13 C -0.14 -3.66 10.07 22.32 0.22 -3.44 15 14 C -0.09 -2.19 10.02 22.22 0.22 -1.97 15 15 C -0.15 -4.11 10.07 22.47 0.23 -3.88 15 16 C 0.12 4.40 7.11 38.35 0.27 4.68 15 17 N -0.67 -28.18 5.88 -303.19 -1.78 -29.96 15 18 C 0.52 27.23 7.20 87.94 0.63 27.87 15 19 O -0.52 -31.71 16.04 -3.08 -0.05 -31.76 15 20 H 0.02 1.13 8.14 -2.38 -0.02 1.11 15 21 H 0.06 3.46 6.13 -2.39 -0.01 3.44 15 22 H 0.05 2.39 8.14 -2.39 -0.02 2.37 15 23 H 0.26 14.90 8.31 -92.71 -0.77 14.13 15 24 H 0.12 4.11 8.06 -2.91 -0.02 4.08 15 25 H 0.15 2.83 8.06 -2.91 -0.02 2.81 15 26 H 0.16 2.39 8.06 -2.91 -0.02 2.37 15 27 H 0.14 3.10 8.06 -2.91 -0.02 3.07 15 28 H 0.40 14.15 8.96 -92.71 -0.83 13.31 15 Total: -1.00 -69.80 243.42 3.65 -66.15 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.35 Total: 15.03 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 2.91 Total: -14.03 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -1.58 Total: -81.67 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.05 Total: -31.76 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -69.80 3.65 -66.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035904630.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.771 kcal (2) G-P(sol) polarization free energy of solvation -69.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds