Wall clock time and date at job start Mon Mar 30 2020 02:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 110.45572 * 2 1 4 4 H 1.07997 * 119.99592 * 119.39222 * 3 2 1 5 5 C 1.37868 * 120.00175 * 299.38615 * 3 2 1 6 6 N 1.31516 * 119.99979 * 6.44773 * 5 3 2 7 7 Si 1.86798 * 120.00217 * 186.44595 * 5 3 2 8 8 H 1.48498 * 109.47475 * 94.98720 * 7 5 3 9 9 H 1.48501 * 109.47269 * 214.99088 * 7 5 3 10 10 H 1.48501 * 109.47069 * 334.98743 * 7 5 3 11 11 C 1.51139 * 110.51346 * 122.60502 * 2 1 3 12 12 C 1.37447 * 133.06017 * 298.88572 * 11 2 1 13 13 C 1.38395 * 120.00006 * 179.85705 * 12 11 2 14 14 C 1.38305 * 119.82787 * 359.93323 * 13 12 11 15 15 C 1.37938 * 120.37638 * 359.97438 * 14 13 12 16 16 C 1.39204 * 106.18240 * 118.60281 * 11 2 1 17 17 N 1.39530 * 110.26853 * 0.11577 * 16 11 2 18 18 C 1.34368 * 112.24816 * 359.92490 * 17 16 11 19 19 O 1.21289 * 126.44582 * 180.02562 * 18 17 16 20 20 H 1.08999 * 109.47261 * 59.29148 * 1 2 3 21 21 H 1.08999 * 109.47430 * 179.29891 * 1 2 3 22 22 H 1.09008 * 109.46943 * 299.29849 * 1 2 3 23 23 H 0.97005 * 120.00062 * 179.97438 * 6 5 3 24 24 H 1.07994 * 119.95441 * 359.78558 * 12 11 2 25 25 H 1.08004 * 120.08535 * 179.97438 * 13 12 11 26 26 H 1.08001 * 119.80880 * 180.02562 * 14 13 12 27 27 H 1.08000 * 119.93338 * 180.02562 * 15 14 13 28 28 H 0.96998 * 123.87824 * 179.97438 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 1 2.6754 1.7575 0.8149 5 6 1.7487 2.2627 -1.0403 6 7 0.8946 1.8861 -1.9669 7 14 2.5443 3.9502 -1.1339 8 1 3.7419 3.8850 -2.0095 9 1 1.5739 4.9246 -1.6942 10 1 2.9496 4.3825 0.2277 11 6 2.0596 -0.7628 1.1925 12 6 1.9341 -0.5873 2.5499 13 6 2.5456 -1.4715 3.4214 14 6 3.2809 -2.5313 2.9226 15 6 3.4081 -2.7125 1.5611 16 6 2.7950 -1.8265 0.6772 17 7 2.7756 -1.7967 -0.7177 18 6 2.0604 -0.7640 -1.1946 19 8 1.8743 -0.4947 -2.3625 20 1 -0.3634 0.5248 -0.8835 21 1 -0.3634 -1.0276 -0.0126 22 1 -0.3633 0.5029 0.8963 23 1 0.6776 2.4848 -2.6986 24 1 1.3591 0.2416 2.9356 25 1 2.4482 -1.3346 4.4883 26 1 3.7576 -3.2214 3.6030 27 1 3.9836 -3.5428 1.1794 28 1 3.2260 -2.4473 -1.2787 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035904631.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:48 Heat of formation + Delta-G solvation = -17.407525 kcal Electronic energy + Delta-G solvation = -14500.531711 eV Core-core repulsion = 12094.765050 eV Total energy + Delta-G solvation = -2405.766661 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.13271 -38.95773 -36.23535 -35.72684 -33.13463 -30.67409 -29.52591 -27.40515 -25.60991 -23.22460 -22.00799 -21.16307 -18.73824 -18.07636 -17.35953 -16.72849 -16.29577 -15.89943 -15.20294 -14.71197 -14.54757 -14.51283 -13.74083 -13.48282 -13.05602 -12.95106 -12.83379 -12.53990 -12.31812 -12.11648 -11.65898 -11.51718 -11.14507 -10.59625 -10.33802 -9.54180 -8.69825 -8.06942 -6.27486 0.53041 0.67374 1.38782 1.40882 1.51106 2.00408 2.39040 2.42365 3.12406 3.16807 3.81789 4.14728 4.22460 4.37309 4.63358 4.72950 4.79110 4.92428 5.07385 5.18373 5.32414 5.45671 5.57925 5.72984 5.85911 5.93951 5.97072 6.14828 6.25377 6.41058 6.74636 7.38902 7.54346 8.90066 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.034823 B = 0.011667 C = 0.010247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.869583 B = 2399.360476 C = 2731.983592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.069 3.931 3 C -0.534 4.534 4 H 0.062 0.938 5 C 0.023 3.977 6 N -0.866 5.866 7 Si 0.954 3.046 8 H -0.286 1.286 9 H -0.278 1.278 10 H -0.260 1.260 11 C -0.129 4.129 12 C -0.084 4.084 13 C -0.141 4.141 14 C -0.094 4.094 15 C -0.146 4.146 16 C 0.115 3.885 17 N -0.672 5.672 18 C 0.518 3.482 19 O -0.527 6.527 20 H 0.066 0.934 21 H 0.021 0.979 22 H 0.050 0.950 23 H 0.259 0.741 24 H 0.121 0.879 25 H 0.155 0.845 26 H 0.164 0.836 27 H 0.145 0.855 28 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.920 -7.822 10.275 13.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.065 3.935 3 C -0.571 4.571 4 H 0.080 0.920 5 C -0.181 4.181 6 N -0.500 5.500 7 Si 0.779 3.221 8 H -0.213 1.213 9 H -0.204 1.204 10 H -0.184 1.184 11 C -0.132 4.132 12 C -0.103 4.103 13 C -0.160 4.160 14 C -0.112 4.112 15 C -0.167 4.167 16 C 0.018 3.982 17 N -0.316 5.316 18 C 0.308 3.692 19 O -0.401 6.401 20 H 0.085 0.915 21 H 0.040 0.960 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.139 0.861 25 H 0.172 0.828 26 H 0.182 0.818 27 H 0.163 0.837 28 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.621 -7.499 9.406 12.563 hybrid contribution 0.469 0.726 -1.093 1.393 sum 4.090 -6.773 8.313 11.477 Atomic orbital electron populations 1.21496 0.94681 0.97998 1.02549 1.17757 0.94675 0.94232 0.86816 1.20832 1.33940 0.94179 1.08165 0.91998 1.25810 0.95087 1.01952 0.95248 1.70119 1.31250 1.36706 1.11970 0.85608 0.78137 0.79708 0.78633 1.21271 1.20367 1.18369 1.20421 1.00910 0.96363 0.95518 1.20411 0.99610 0.99682 0.90577 1.21354 0.99011 0.95294 1.00359 1.21182 0.98146 0.98115 0.93781 1.20653 1.03249 0.99986 0.92832 1.18680 0.99243 0.97464 0.82799 1.43968 1.52134 1.29501 1.06045 1.21994 0.76987 0.79104 0.91135 1.90631 1.60000 1.69268 1.20197 0.91501 0.96028 0.93057 0.93162 0.86071 0.82755 0.81833 0.83722 0.75713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.47 8.42 71.98 0.61 -4.86 15 2 C 0.07 3.51 0.66 -54.06 -0.04 3.48 15 3 C -0.53 -29.66 8.08 25.60 0.21 -29.46 15 4 H 0.06 3.39 7.78 -2.91 -0.02 3.36 15 5 C 0.02 1.33 5.12 84.65 0.43 1.76 15 6 N -0.87 -51.77 9.24 21.44 0.20 -51.57 15 7 Si 0.95 44.59 29.54 68.60 2.03 46.62 15 8 H -0.29 -13.54 7.11 99.48 0.71 -12.83 15 9 H -0.28 -12.62 7.11 99.48 0.71 -11.91 15 10 H -0.26 -11.48 7.11 99.48 0.71 -10.78 15 11 C -0.13 -5.47 4.96 -19.68 -0.10 -5.57 15 12 C -0.08 -2.93 10.02 22.12 0.22 -2.71 15 13 C -0.14 -3.64 10.07 22.32 0.22 -3.42 15 14 C -0.09 -2.18 10.02 22.21 0.22 -1.96 15 15 C -0.15 -4.07 10.07 22.47 0.23 -3.84 15 16 C 0.11 4.36 7.12 38.42 0.27 4.63 15 17 N -0.67 -28.03 5.88 -302.98 -1.78 -29.81 15 18 C 0.52 27.30 7.17 87.94 0.63 27.93 15 19 O -0.53 -31.73 15.99 -3.06 -0.05 -31.78 15 20 H 0.07 3.77 5.96 -2.39 -0.01 3.75 15 21 H 0.02 0.97 8.14 -2.39 -0.02 0.95 15 22 H 0.05 2.37 8.14 -2.38 -0.02 2.35 15 23 H 0.26 14.92 8.31 -92.70 -0.77 14.15 15 24 H 0.12 4.09 8.06 -2.91 -0.02 4.07 15 25 H 0.15 2.83 8.06 -2.91 -0.02 2.81 15 26 H 0.16 2.38 8.06 -2.91 -0.02 2.35 15 27 H 0.15 3.08 8.06 -2.91 -0.02 3.06 15 28 H 0.40 14.09 8.96 -92.71 -0.83 13.25 15 Total: -1.00 -69.61 243.21 3.66 -65.96 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.35 Total: 14.60 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 2.91 Total: -14.01 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -1.58 Total: -81.38 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.05 Total: -31.78 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -69.61 3.66 -65.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035904631.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.549 kcal (2) G-P(sol) polarization free energy of solvation -69.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds