Wall clock time and date at job start Mon Mar 30 2020 02:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35952 * 116.99958 * 2 1 4 4 C 1.39179 * 119.87884 * 0.03037 * 3 2 1 5 5 C 1.37827 * 120.59470 * 179.97438 * 4 3 2 6 6 C 1.38981 * 120.00201 * 359.96683 * 5 4 3 7 7 C 1.40671 * 119.55246 * 0.03378 * 6 5 4 8 8 C 1.46681 * 106.09062 * 179.97438 * 7 6 5 9 9 C 1.34306 * 107.06070 * 359.75145 * 8 7 6 10 10 N 1.36989 * 109.93652 * 0.40051 * 9 8 7 11 11 C 1.37187 * 125.09844 * 179.85255 * 10 9 8 12 12 H 1.07998 * 120.00140 * 159.01272 * 11 10 9 13 13 C 1.38843 * 119.99581 * 338.73498 * 11 10 9 14 14 N 1.31451 * 120.00191 * 349.29472 * 13 11 10 15 15 Si 1.86801 * 119.99735 * 169.29502 * 13 11 10 16 16 H 1.48494 * 109.46955 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46892 * 120.00095 * 15 13 11 18 18 H 1.48501 * 109.46998 * 239.99831 * 15 13 11 19 19 C 1.38273 * 119.87552 * 180.02562 * 3 2 1 20 20 H 1.08991 * 109.47711 * 59.99739 * 1 2 3 21 21 H 1.09007 * 109.47338 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47152 * 299.99385 * 1 2 3 23 23 H 1.07994 * 119.70299 * 359.97046 * 4 3 2 24 24 H 1.08004 * 120.00108 * 180.02562 * 5 4 3 25 25 H 1.07995 * 126.47124 * 180.02562 * 8 7 6 26 26 H 1.08000 * 125.03107 * 180.24966 * 9 8 7 27 27 H 0.97002 * 119.99999 * 179.97438 * 14 13 11 28 28 H 1.07997 * 120.19564 * 0.02562 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2857 2.3770 0.0006 5 6 1.8960 3.6128 0.0012 6 6 3.2829 3.7029 0.0018 7 6 4.0546 2.5268 0.0011 8 6 5.4560 2.9600 0.0014 9 6 5.4532 4.3031 -0.0034 10 7 4.1644 4.7675 0.0023 11 6 3.8029 6.0909 0.0025 12 1 2.8166 6.3813 -0.3281 13 6 4.7030 7.0563 0.4331 14 7 5.8151 6.6964 1.0345 15 14 4.3337 8.8666 0.1579 16 1 3.0277 9.0055 -0.5350 17 1 4.2755 9.5646 1.4674 18 1 5.4041 9.4688 -0.6769 19 6 3.4272 1.2807 -0.0005 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 0.2077 2.3126 0.0006 24 1 1.2965 4.5111 0.0021 25 1 6.3258 2.3199 0.0006 26 1 6.3362 4.9248 -0.0084 27 1 6.4442 7.3709 1.3350 28 1 4.0165 0.3757 -0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039148135.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:38 Heat of formation + Delta-G solvation = 19.633120 kcal Electronic energy + Delta-G solvation = -13863.593907 eV Core-core repulsion = 11459.433448 eV Total energy + Delta-G solvation = -2404.160458 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.07326 -38.49054 -35.08827 -33.00537 -30.99651 -28.87212 -27.43747 -26.54446 -24.63495 -21.72339 -20.34387 -19.82768 -17.71151 -16.77543 -15.66865 -15.37375 -15.14299 -14.67444 -14.22480 -13.33262 -12.98264 -12.69150 -12.38669 -11.99878 -11.71123 -11.62113 -11.42642 -11.22540 -10.89740 -10.67207 -10.54679 -9.85598 -9.74853 -9.19157 -8.53804 -6.90306 -6.78999 -6.58576 -4.28321 2.12530 2.62559 2.98560 3.02425 3.07763 3.79466 3.94161 4.05834 4.75156 4.85549 5.03199 5.39914 5.48117 5.65209 5.73877 5.81093 6.22607 6.34288 6.40558 6.66356 6.94657 7.02999 7.05478 7.15017 7.27642 7.44476 7.55417 7.77582 8.13196 8.25841 8.46282 8.99954 9.43601 10.27828 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.051996 B = 0.007789 C = 0.006867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.374838 B = 3594.160805 C = 4076.387460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.329 6.329 3 C 0.067 3.933 4 C -0.212 4.212 5 C -0.071 4.071 6 C 0.027 3.973 7 C -0.085 4.085 8 C -0.288 4.288 9 C 0.092 3.908 10 N -0.291 5.291 11 C -0.339 4.339 12 H 0.105 0.895 13 C 0.041 3.959 14 N -0.853 5.853 15 Si 0.940 3.060 16 H -0.264 1.264 17 H -0.275 1.275 18 H -0.273 1.273 19 C -0.118 4.118 20 H 0.047 0.953 21 H 0.087 0.913 22 H 0.047 0.953 23 H 0.114 0.886 24 H 0.110 0.890 25 H 0.125 0.875 26 H 0.171 0.829 27 H 0.279 0.721 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.550 -4.053 -1.643 7.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.243 6.243 3 C 0.022 3.978 4 C -0.232 4.232 5 C -0.091 4.091 6 C -0.083 4.083 7 C -0.091 4.091 8 C -0.313 4.313 9 C -0.044 4.044 10 N 0.046 4.954 11 C -0.466 4.466 12 H 0.123 0.877 13 C -0.167 4.167 14 N -0.485 5.485 15 Si 0.764 3.236 16 H -0.188 1.188 17 H -0.201 1.201 18 H -0.199 1.199 19 C -0.138 4.138 20 H 0.065 0.935 21 H 0.105 0.895 22 H 0.066 0.934 23 H 0.132 0.868 24 H 0.128 0.872 25 H 0.143 0.857 26 H 0.188 0.812 27 H 0.089 0.911 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.370 -3.743 -1.534 6.723 hybrid contribution -0.352 1.078 0.061 1.136 sum -5.722 -2.666 -1.473 6.482 Atomic orbital electron populations 1.22817 0.80125 1.02407 1.00736 1.85961 1.19924 1.27921 1.90542 1.18412 0.91763 0.83163 1.04418 1.20525 0.98259 0.91718 1.12692 1.19679 0.91386 0.96499 1.01497 1.18340 0.91435 0.87821 1.10669 1.18743 0.93699 0.90975 1.05697 1.21227 0.93485 0.93942 1.22623 1.22097 0.88305 0.93268 1.00767 1.40205 1.03561 1.03819 1.47836 1.19871 1.02464 0.79803 1.44504 0.87725 1.25495 0.95557 1.01667 0.94009 1.69904 1.10039 1.35531 1.33007 0.85659 0.79143 0.80180 0.78568 1.18846 1.20093 1.19879 1.19357 0.90406 0.96227 1.07800 0.93454 0.89457 0.93446 0.86849 0.87205 0.85708 0.81184 0.91066 0.86939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 15 2 O -0.33 -5.93 10.49 -19.59 -0.21 -6.14 15 3 C 0.07 1.37 6.68 -39.22 -0.26 1.11 15 4 C -0.21 -4.19 9.01 -39.38 -0.35 -4.55 15 5 C -0.07 -1.57 9.94 -39.46 -0.39 -1.96 15 6 C 0.03 0.69 6.75 -83.79 -0.57 0.12 15 7 C -0.08 -2.07 6.37 -105.10 -0.67 -2.73 15 8 C -0.29 -6.91 11.09 -37.56 -0.42 -7.33 15 9 C 0.09 2.35 9.89 -16.63 -0.16 2.19 15 10 N -0.29 -7.76 2.92 -59.72 -0.17 -7.93 15 11 C -0.34 -8.88 9.93 -14.93 -0.15 -9.03 15 12 H 0.11 2.61 7.85 -52.49 -0.41 2.20 15 13 C 0.04 1.01 5.35 -17.49 -0.09 0.92 15 14 N -0.85 -22.00 10.85 55.49 0.60 -21.39 15 15 Si 0.94 18.94 29.57 -169.99 -5.03 13.91 15 16 H -0.26 -5.21 7.11 56.52 0.40 -4.80 15 17 H -0.28 -5.52 7.11 56.52 0.40 -5.12 15 18 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 19 C -0.12 -2.60 10.04 -39.10 -0.39 -2.99 15 20 H 0.05 0.57 7.65 -51.93 -0.40 0.18 15 21 H 0.09 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.05 0.58 7.65 -51.93 -0.40 0.18 15 23 H 0.11 1.86 6.26 -52.49 -0.33 1.53 15 24 H 0.11 2.26 8.06 -52.48 -0.42 1.83 15 25 H 0.13 2.62 8.06 -52.49 -0.42 2.20 15 26 H 0.17 4.35 6.35 -52.49 -0.33 4.02 15 27 H 0.28 6.61 8.31 -40.82 -0.34 6.28 15 28 H 0.11 2.25 8.06 -52.49 -0.42 1.82 15 LS Contribution 246.38 15.07 3.71 3.71 Total: -1.00 -28.65 246.38 -6.25 -34.90 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -2.69 Total: 5.74 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -2.47 Total: -22.80 kcal Atomic # 7 Polarization: -29.76 SS G_CDS: 0.43 Total: -29.33 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.21 Total: -6.14 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.65 -6.25 -34.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039148135.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.534 kcal (2) G-P(sol) polarization free energy of solvation -28.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds