Wall clock time and date at job start Mon Mar 30 2020 02:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35952 * 116.99958 * 2 1 4 4 C 1.39179 * 119.87884 * 0.03037 * 3 2 1 5 5 C 1.37827 * 120.59470 * 179.97438 * 4 3 2 6 6 C 1.38981 * 120.00201 * 359.96683 * 5 4 3 7 7 C 1.40671 * 119.55246 * 0.03378 * 6 5 4 8 8 C 1.46681 * 106.09062 * 179.97438 * 7 6 5 9 9 C 1.34306 * 107.06070 * 359.75145 * 8 7 6 10 10 N 1.36989 * 109.93652 * 0.40051 * 9 8 7 11 11 C 1.37187 * 125.09844 * 179.85255 * 10 9 8 12 12 H 1.07998 * 120.00140 * 159.01272 * 11 10 9 13 13 C 1.38843 * 119.99581 * 338.73498 * 11 10 9 14 14 N 1.31451 * 120.00191 * 349.29472 * 13 11 10 15 15 Si 1.86801 * 119.99735 * 169.29502 * 13 11 10 16 16 H 1.48494 * 109.46955 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46892 * 120.00095 * 15 13 11 18 18 H 1.48501 * 109.46998 * 239.99831 * 15 13 11 19 19 C 1.38273 * 119.87552 * 180.02562 * 3 2 1 20 20 H 1.08991 * 109.47711 * 59.99739 * 1 2 3 21 21 H 1.09007 * 109.47338 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47152 * 299.99385 * 1 2 3 23 23 H 1.07994 * 119.70299 * 359.97046 * 4 3 2 24 24 H 1.08004 * 120.00108 * 180.02562 * 5 4 3 25 25 H 1.07995 * 126.47124 * 180.02562 * 8 7 6 26 26 H 1.08000 * 125.03107 * 180.24966 * 9 8 7 27 27 H 0.97002 * 119.99999 * 179.97438 * 14 13 11 28 28 H 1.07997 * 120.19564 * 0.02562 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2857 2.3770 0.0006 5 6 1.8960 3.6128 0.0012 6 6 3.2829 3.7029 0.0018 7 6 4.0546 2.5268 0.0011 8 6 5.4560 2.9600 0.0014 9 6 5.4532 4.3031 -0.0034 10 7 4.1644 4.7675 0.0023 11 6 3.8029 6.0909 0.0025 12 1 2.8166 6.3813 -0.3281 13 6 4.7030 7.0563 0.4331 14 7 5.8151 6.6964 1.0345 15 14 4.3337 8.8666 0.1579 16 1 3.0277 9.0055 -0.5350 17 1 4.2755 9.5646 1.4674 18 1 5.4041 9.4688 -0.6769 19 6 3.4272 1.2807 -0.0005 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 0.2077 2.3126 0.0006 24 1 1.2965 4.5111 0.0021 25 1 6.3258 2.3199 0.0006 26 1 6.3362 4.9248 -0.0084 27 1 6.4442 7.3709 1.3350 28 1 4.0165 0.3757 -0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039148135.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:38 Heat of formation + Delta-G solvation = 3.830393 kcal Electronic energy + Delta-G solvation = -13864.279164 eV Core-core repulsion = 11459.433448 eV Total energy + Delta-G solvation = -2404.845716 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.84864 -40.00035 -36.76262 -34.83350 -32.78951 -30.52678 -29.17235 -27.85964 -26.44875 -23.45176 -22.01319 -21.67653 -19.50071 -18.32810 -17.55775 -16.90923 -16.43566 -16.34780 -15.84103 -15.15753 -14.73013 -14.26026 -13.93264 -13.71389 -13.42700 -13.21923 -12.96338 -12.75341 -12.47409 -12.40853 -12.10103 -11.45576 -11.38907 -10.97119 -10.33104 -8.75533 -8.53778 -8.42070 -6.22349 0.38608 0.92546 1.36894 1.40208 1.53631 2.10069 2.21599 2.59260 2.90938 3.05695 3.22340 4.02410 4.19502 4.43948 4.51805 4.54867 4.62662 4.67982 4.80967 4.92109 5.12863 5.22753 5.31653 5.35047 5.57255 5.64346 5.73863 6.02367 6.34339 6.54982 6.73099 7.12407 7.55230 8.43472 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.051996 B = 0.007789 C = 0.006867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.374838 B = 3594.160805 C = 4076.387460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.338 6.338 3 C 0.077 3.923 4 C -0.195 4.195 5 C -0.086 4.086 6 C -0.007 4.007 7 C -0.106 4.106 8 C -0.291 4.291 9 C 0.065 3.935 10 N -0.311 5.311 11 C -0.372 4.372 12 H 0.108 0.892 13 C -0.001 4.001 14 N -0.884 5.884 15 Si 1.014 2.986 16 H -0.256 1.256 17 H -0.271 1.271 18 H -0.267 1.267 19 C -0.134 4.134 20 H 0.059 0.941 21 H 0.120 0.880 22 H 0.058 0.942 23 H 0.154 0.846 24 H 0.121 0.879 25 H 0.148 0.852 26 H 0.162 0.838 27 H 0.284 0.716 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.517 -4.531 -1.813 8.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.253 6.253 3 C 0.032 3.968 4 C -0.214 4.214 5 C -0.106 4.106 6 C -0.116 4.116 7 C -0.112 4.112 8 C -0.316 4.316 9 C -0.070 4.070 10 N 0.025 4.975 11 C -0.499 4.499 12 H 0.125 0.875 13 C -0.206 4.206 14 N -0.517 5.517 15 Si 0.834 3.166 16 H -0.180 1.180 17 H -0.196 1.196 18 H -0.192 1.192 19 C -0.154 4.154 20 H 0.078 0.922 21 H 0.138 0.862 22 H 0.076 0.924 23 H 0.171 0.829 24 H 0.139 0.861 25 H 0.165 0.835 26 H 0.179 0.821 27 H 0.094 0.906 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.354 -4.254 -1.706 8.665 hybrid contribution 0.116 1.013 0.124 1.027 sum -7.238 -3.241 -1.582 8.087 Atomic orbital electron populations 1.23249 0.77128 1.05151 1.01800 1.85971 1.22925 1.26366 1.90001 1.18520 0.91558 0.84430 1.02279 1.20930 1.00240 0.90422 1.09843 1.19969 0.90441 0.98112 1.02062 1.18906 0.92856 0.87921 1.11906 1.19027 0.93767 0.91858 1.06555 1.21540 0.94552 0.93674 1.21799 1.22124 0.88280 0.93966 1.02671 1.40408 1.03977 1.04320 1.48841 1.20238 1.03275 0.80424 1.45950 0.87470 1.26523 0.95024 1.06026 0.93010 1.69999 1.10940 1.37188 1.33544 0.84581 0.79299 0.74097 0.78578 1.17983 1.19579 1.19187 1.19569 0.91668 0.95868 1.08286 0.92227 0.86157 0.92370 0.82854 0.86123 0.83475 0.82130 0.90550 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.57 15 2 O -0.34 -11.04 10.49 -93.01 -0.98 -12.02 15 3 C 0.08 2.99 6.68 22.50 0.15 3.14 15 4 C -0.19 -7.18 9.01 22.40 0.20 -6.98 15 5 C -0.09 -3.74 9.94 22.35 0.22 -3.52 15 6 C -0.01 -0.34 6.75 38.91 0.26 -0.08 15 7 C -0.11 -5.21 6.37 -20.17 -0.13 -5.34 15 8 C -0.29 -14.30 11.09 23.58 0.26 -14.04 15 9 C 0.07 3.48 9.89 82.99 0.82 4.30 15 10 N -0.31 -17.14 2.92 -342.84 -1.00 -18.14 15 11 C -0.37 -20.01 9.93 84.00 0.83 -19.17 15 12 H 0.11 5.46 7.85 -2.91 -0.02 5.44 15 13 C 0.00 -0.06 5.35 84.89 0.45 0.39 15 14 N -0.88 -46.80 10.85 21.64 0.23 -46.57 15 15 Si 1.01 38.83 29.57 68.60 2.03 40.85 15 16 H -0.26 -9.36 7.11 99.48 0.71 -8.65 15 17 H -0.27 -10.08 7.11 99.48 0.71 -9.37 15 18 H -0.27 -9.86 7.11 99.48 0.71 -9.15 15 19 C -0.13 -5.78 10.04 22.58 0.23 -5.55 15 20 H 0.06 1.16 7.65 -2.39 -0.02 1.14 15 21 H 0.12 1.82 8.14 -2.38 -0.02 1.81 15 22 H 0.06 1.15 7.65 -2.39 -0.02 1.13 15 23 H 0.15 4.35 6.26 -2.91 -0.02 4.33 15 24 H 0.12 4.87 8.06 -2.91 -0.02 4.84 15 25 H 0.15 6.26 8.06 -2.91 -0.02 6.24 15 26 H 0.16 8.68 6.35 -2.91 -0.02 8.66 15 27 H 0.28 13.76 8.31 -92.71 -0.77 12.99 15 28 H 0.13 4.94 8.06 -2.91 -0.02 4.92 15 Total: -1.00 -62.70 246.38 5.87 -56.83 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 1.16 Total: 24.32 kcal Atomic # 6 Polarization: -49.70 SS G_CDS: 4.42 Total: -45.28 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: -0.77 Total: -64.71 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.98 Total: -12.02 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.85 kcal Total: -62.70 5.87 -56.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039148135.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.661 kcal (2) G-P(sol) polarization free energy of solvation -62.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds