Wall clock time and date at job start Mon Mar 30 2020 03:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 116.99930 * 2 1 4 4 C 1.38747 * 120.05586 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94590 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05159 * 359.97438 * 5 4 3 7 7 C 1.38243 * 120.11362 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05438 * 359.97438 * 7 6 5 9 9 C 1.50708 * 120.02715 * 179.97438 * 8 7 6 10 10 H 1.08994 * 109.46831 * 180.02562 * 9 8 7 11 11 C 1.47200 * 109.46980 * 300.02657 * 9 8 7 12 12 N 4.82484 * 153.78871 * 269.05992 * 2 1 3 13 13 C 1.50702 * 109.46688 * 60.02533 * 9 8 7 14 14 H 1.07996 * 120.00403 * 0.02562 * 13 9 8 15 15 C 1.37881 * 119.99810 * 179.97438 * 13 9 8 16 16 N 1.31512 * 120.00053 * 179.97438 * 15 13 9 17 17 Si 1.86806 * 119.99886 * 0.02562 * 15 13 9 18 18 H 1.48498 * 109.47176 * 89.99646 * 17 15 13 19 19 H 1.48503 * 109.46867 * 210.00229 * 17 15 13 20 20 H 1.48504 * 109.47057 * 329.99570 * 17 15 13 21 21 H 1.08995 * 109.47056 * 60.00501 * 1 2 3 22 22 H 1.08998 * 109.46876 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47294 * 300.00489 * 1 2 3 24 24 H 1.08000 * 120.03081 * 0.04968 * 4 3 2 25 25 H 1.07993 * 119.97844 * 179.72247 * 5 4 3 26 26 H 1.08004 * 119.94567 * 179.97438 * 6 5 4 27 27 H 1.08001 * 119.97538 * 179.97438 * 7 6 5 28 28 H 0.97006 * 119.99833 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6757 -0.0005 7 6 4.0560 2.5171 0.0000 8 6 3.4311 1.2848 0.0005 9 6 4.2537 0.0221 0.0005 10 1 3.5910 -0.8432 0.0005 11 6 5.1030 -0.0102 -1.2013 12 7 5.7577 -0.0350 -2.1308 13 6 5.1232 -0.0110 1.2310 14 1 5.0837 0.8009 1.9421 15 6 5.9683 -1.0782 1.4496 16 7 6.7274 -1.1068 2.5231 17 14 6.0361 -2.4829 0.2199 18 1 7.0703 -2.1935 -0.8056 19 1 6.3786 -3.7433 0.9267 20 1 4.7131 -2.6286 -0.4386 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 0.2128 2.3203 -0.0001 25 1 1.3341 4.5113 -0.0060 26 1 3.7923 4.6380 -0.0014 27 1 5.1344 2.5751 0.0000 28 1 7.3222 -1.8576 2.6766 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041203452.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:17 Heat of formation + Delta-G solvation = -6.407088 kcal Electronic energy + Delta-G solvation = -13968.802992 eV Core-core repulsion = 11563.513346 eV Total energy + Delta-G solvation = -2405.289646 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.12081 -38.51642 -37.57747 -35.29875 -33.54937 -30.93833 -29.83571 -27.90412 -25.51065 -22.94607 -22.57854 -19.81341 -18.77901 -17.87328 -17.09935 -16.85107 -16.44457 -15.80188 -15.26882 -14.94665 -14.89930 -14.37690 -14.25590 -13.93560 -13.36544 -13.28088 -12.94140 -12.71989 -12.55036 -12.22064 -11.93291 -11.84153 -11.54178 -11.39804 -10.96530 -9.67720 -8.96853 -8.45105 -6.52188 0.49136 0.62267 1.18540 1.27252 1.30079 1.85626 1.90827 2.19609 2.54934 2.79031 2.99714 3.59323 4.00094 4.09299 4.29974 4.41499 4.53910 4.55585 4.61867 4.79833 4.84634 4.99054 5.18106 5.29597 5.49810 5.63251 5.76102 6.00421 6.14700 6.48263 6.63156 6.77392 7.13048 8.69218 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.029547 B = 0.010806 C = 0.009822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.412784 B = 2590.527116 C = 2850.093241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.338 6.338 3 C 0.119 3.881 4 C -0.205 4.205 5 C -0.081 4.081 6 C -0.161 4.161 7 C -0.085 4.085 8 C -0.108 4.108 9 C 0.142 3.858 10 H 0.089 0.911 11 C 0.238 3.762 12 N -0.511 5.511 13 C -0.505 4.505 14 H 0.068 0.932 15 C 0.044 3.956 16 N -0.919 5.919 17 Si 0.891 3.109 18 H -0.284 1.284 19 H -0.266 1.266 20 H -0.242 1.242 21 H 0.069 0.931 22 H 0.113 0.887 23 H 0.068 0.932 24 H 0.160 0.840 25 H 0.161 0.839 26 H 0.144 0.856 27 H 0.109 0.891 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.223 6.270 -3.705 16.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.252 6.252 3 C 0.074 3.926 4 C -0.223 4.223 5 C -0.099 4.099 6 C -0.179 4.179 7 C -0.104 4.104 8 C -0.110 4.110 9 C 0.120 3.880 10 H 0.106 0.894 11 C -0.077 4.077 12 N -0.190 5.190 13 C -0.543 4.543 14 H 0.086 0.914 15 C -0.158 4.158 16 N -0.557 5.557 17 Si 0.716 3.284 18 H -0.210 1.210 19 H -0.191 1.191 20 H -0.165 1.165 21 H 0.088 0.912 22 H 0.131 0.869 23 H 0.087 0.913 24 H 0.177 0.823 25 H 0.179 0.821 26 H 0.162 0.838 27 H 0.127 0.873 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.035 5.909 -4.996 16.026 hybrid contribution 0.436 -0.836 0.120 0.950 sum -13.599 5.073 -4.877 15.312 Atomic orbital electron populations 1.23362 0.76466 1.05386 1.02475 1.86088 1.23522 1.26951 1.88674 1.18926 0.91025 0.85563 0.97082 1.21488 1.01117 0.91349 1.08386 1.21306 0.94118 0.98007 0.96454 1.21300 0.94779 0.97944 1.03854 1.20967 0.99925 0.91945 0.97530 1.18954 0.90997 0.94474 1.06550 1.15965 0.91070 0.96364 0.84584 0.89381 1.30938 0.92944 0.90744 0.93124 1.80987 1.12903 1.11027 1.14093 1.20876 1.22353 1.06986 1.04117 0.91373 1.25543 0.94532 0.99558 0.96189 1.69926 1.25395 1.32533 1.27799 0.86527 0.80477 0.81231 0.80184 1.21014 1.19084 1.16514 0.91231 0.86894 0.91335 0.82276 0.82125 0.83803 0.87285 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.45 15 2 O -0.34 -10.97 9.26 -92.41 -0.86 -11.83 15 3 C 0.12 4.07 6.66 22.50 0.15 4.22 15 4 C -0.21 -5.24 9.04 22.36 0.20 -5.04 15 5 C -0.08 -1.92 10.04 22.25 0.22 -1.70 15 6 C -0.16 -4.60 10.04 22.28 0.22 -4.38 15 7 C -0.09 -3.22 8.80 22.25 0.20 -3.02 15 8 C -0.11 -4.39 4.72 -19.77 -0.09 -4.49 15 9 C 0.14 6.73 1.94 -14.09 -0.03 6.70 15 10 H 0.09 4.14 6.05 -2.39 -0.01 4.13 15 11 C 0.24 11.70 10.98 89.43 0.98 12.68 15 12 N -0.51 -25.94 18.39 20.02 0.37 -25.57 15 13 C -0.50 -27.67 8.80 25.60 0.23 -27.44 15 14 H 0.07 4.01 7.85 -2.91 -0.02 3.99 15 15 C 0.04 2.48 5.45 84.66 0.46 2.94 15 16 N -0.92 -55.16 13.96 21.45 0.30 -54.87 15 17 Si 0.89 44.47 25.34 68.60 1.74 46.21 15 18 H -0.28 -14.91 7.11 99.48 0.71 -14.21 15 19 H -0.27 -12.59 7.11 99.48 0.71 -11.88 15 20 H -0.24 -11.30 6.51 99.48 0.65 -10.65 15 21 H 0.07 1.08 7.66 -2.39 -0.02 1.06 15 22 H 0.11 1.77 8.14 -2.39 -0.02 1.75 15 23 H 0.07 1.12 7.66 -2.39 -0.02 1.10 15 24 H 0.16 2.82 6.30 -2.91 -0.02 2.81 15 25 H 0.16 2.45 8.06 -2.91 -0.02 2.42 15 26 H 0.14 3.28 8.06 -2.91 -0.02 3.26 15 27 H 0.11 4.44 8.04 -2.91 -0.02 4.41 15 28 H 0.27 15.37 8.31 -92.70 -0.77 14.60 15 Total: -1.00 -67.67 250.08 6.31 -61.36 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: 1.11 Total: 2.78 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 3.66 Total: -18.08 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: 0.67 Total: -80.44 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.86 Total: -11.83 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.74 Total: 46.21 kcal Total: -67.67 6.31 -61.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041203452.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.949 kcal (2) G-P(sol) polarization free energy of solvation -67.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds