Wall clock time and date at job start Mon Mar 30 2020 02:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00191 * 2 1 4 4 H 1.48502 * 109.47260 * 270.00025 * 3 2 1 5 5 H 1.48502 * 109.47319 * 30.00138 * 3 2 1 6 6 H 1.48499 * 109.47245 * 149.99814 * 3 2 1 7 7 C 1.37874 * 119.99550 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00478 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00089 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.47419 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99830 * 179.97438 * 10 9 7 12 12 C 1.52584 * 109.22365 * 154.99759 * 11 10 9 13 13 C 1.53097 * 109.95633 * 190.99540 * 12 11 10 14 14 S 1.81750 * 108.84180 * 296.97701 * 13 12 11 15 15 O 1.42094 * 109.47308 * 169.25987 * 14 13 12 16 16 C 1.81755 * 102.21981 * 53.26532 * 14 13 12 17 17 C 1.52579 * 109.22813 * 276.23700 * 11 10 9 18 18 H 0.97001 * 119.99315 * 0.02562 * 1 2 3 19 19 H 1.08999 * 109.46926 * 59.99748 * 9 7 2 20 20 H 1.09004 * 109.46917 * 300.00329 * 9 7 2 21 21 H 1.00901 * 111.00102 * 303.95131 * 10 9 7 22 22 H 1.08999 * 109.18916 * 35.62393 * 11 10 9 23 23 H 1.09004 * 109.38665 * 70.85255 * 12 11 10 24 24 H 1.08993 * 109.31267 * 311.09526 * 12 11 10 25 25 H 1.08997 * 109.57635 * 177.17117 * 13 12 11 26 26 H 1.08994 * 109.68210 * 56.84586 * 13 12 11 27 27 H 1.08993 * 109.57205 * 66.54310 * 16 14 13 28 28 H 1.08995 * 109.57540 * 186.92593 * 16 14 13 29 29 H 1.09004 * 109.38905 * 289.15466 * 17 11 10 30 30 H 1.08996 * 109.39049 * 48.85625 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0011 -2.5792 -0.0001 11 6 5.4695 -2.6184 -0.0001 12 6 5.9369 -3.9371 0.6087 13 6 7.4447 -3.8870 0.8694 14 16 8.3088 -3.6969 -0.7182 15 8 9.6779 -3.4005 -0.4798 16 6 7.4887 -2.2397 -1.4305 17 6 5.9760 -2.4752 -1.4323 18 1 -0.4849 0.8401 -0.0004 19 1 3.8745 -0.6810 0.8905 20 1 3.8752 -0.6797 -0.8895 21 1 3.6253 -3.0956 0.7811 22 1 5.8500 -1.7915 0.5995 23 1 5.7157 -4.7523 -0.0803 24 1 5.4125 -4.1059 1.5492 25 1 7.7632 -4.8120 1.3500 26 1 7.6776 -3.0407 1.5155 27 1 7.7207 -1.3602 -0.8300 28 1 7.8359 -2.0883 -2.4526 29 1 5.7522 -3.3859 -1.9880 30 1 5.4788 -1.6306 -1.9092 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042336186.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:44 Heat of formation + Delta-G solvation = -45.427407 kcal Electronic energy + Delta-G solvation = -12859.415337 eV Core-core repulsion = 10587.877594 eV Total energy + Delta-G solvation = -2271.537743 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -37.79286 -35.67618 -33.63226 -31.88019 -31.48035 -27.76426 -24.77414 -23.27658 -21.14200 -20.22933 -17.52681 -16.91585 -15.77466 -15.14056 -15.05991 -14.63786 -14.40184 -14.00393 -13.27188 -13.10761 -12.67796 -12.49642 -12.20746 -11.89301 -11.44821 -11.36098 -11.02628 -10.93023 -10.54827 -10.34829 -9.84725 -9.66939 -9.32300 -8.63927 -8.28381 -7.58943 -6.10993 -4.09109 1.54812 2.49922 3.24167 3.31881 3.33693 3.73943 4.36936 4.57990 4.82253 4.88013 5.06638 5.21784 5.22453 5.33062 5.43663 5.72998 5.79708 5.88046 6.05057 6.06928 6.32997 6.47317 6.71728 6.94972 7.54829 7.81051 8.25085 8.58301 8.97143 9.50998 11.02224 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.057235 B = 0.006709 C = 0.006332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.094813 B = 4172.341518 C = 4420.691921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.517 4.517 8 H 0.081 0.919 9 C 0.163 3.837 10 N -0.673 5.673 11 C 0.068 3.932 12 C -0.096 4.096 13 C -0.433 4.433 14 S 1.229 4.771 15 O -0.868 6.868 16 C -0.433 4.433 17 C -0.086 4.086 18 H 0.264 0.736 19 H -0.018 1.018 20 H 0.023 0.977 21 H 0.339 0.661 22 H 0.032 0.968 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.112 0.888 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.084 0.916 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.113 -8.744 -2.011 15.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.555 4.555 8 H 0.099 0.901 9 C 0.035 3.965 10 N -0.304 5.304 11 C -0.043 4.043 12 C -0.135 4.135 13 C -0.572 4.572 14 S 1.428 4.572 15 O -0.864 6.864 16 C -0.572 4.572 17 C -0.125 4.125 18 H 0.074 0.926 19 H 0.000 1.000 20 H 0.041 0.959 21 H 0.157 0.843 22 H 0.050 0.950 23 H 0.106 0.894 24 H 0.090 0.910 25 H 0.130 0.870 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.131 0.869 29 H 0.103 0.897 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.657 -9.224 -3.057 16.762 hybrid contribution 0.770 3.270 2.310 4.077 sum 14.427 -5.954 -0.748 15.625 Atomic orbital electron populations 1.69896 1.06121 1.26910 1.50839 1.24895 0.94736 0.98885 0.94725 0.86859 0.80216 0.84009 0.78632 1.20081 1.21137 1.19451 1.21051 0.88872 0.94845 1.50735 0.90138 1.20060 0.96674 0.85012 0.94721 1.60463 1.03357 1.16874 1.49671 1.21579 0.91369 0.95862 0.95466 1.21331 0.91364 0.98617 1.02173 1.27546 1.05391 1.07190 1.17049 1.70304 0.84518 1.05752 0.96621 1.93065 1.25961 1.83641 1.83689 1.27579 1.05636 1.14979 1.08979 1.21150 0.89776 1.04178 0.97363 0.92598 0.99993 0.95898 0.84305 0.95035 0.89399 0.90971 0.86961 0.89874 0.89936 0.86906 0.89741 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.96 55.43 0.77 -26.51 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -14.44 9.87 -34.44 -0.34 -14.78 16 8 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 9 C 0.16 3.83 4.29 -4.98 -0.02 3.81 16 10 N -0.67 -12.74 6.28 -108.45 -0.68 -13.43 16 11 C 0.07 1.01 2.24 -68.14 -0.15 0.86 16 12 C -0.10 -1.06 5.14 -26.89 -0.14 -1.20 16 13 C -0.43 -4.50 6.44 37.21 0.24 -4.26 16 14 S 1.23 12.60 13.75 -107.50 -1.48 11.12 16 15 O -0.87 -14.49 18.14 -35.23 -0.64 -15.13 16 16 C -0.43 -4.99 6.44 37.21 0.24 -4.75 16 17 C -0.09 -1.12 5.29 -26.90 -0.14 -1.26 16 18 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 19 H -0.02 -0.42 7.11 -51.93 -0.37 -0.79 16 20 H 0.02 0.55 6.63 -51.93 -0.34 0.20 16 21 H 0.34 6.16 8.15 -39.29 -0.32 5.84 16 22 H 0.03 0.53 7.73 -51.93 -0.40 0.12 16 23 H 0.09 0.76 8.06 -51.93 -0.42 0.34 16 24 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 25 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 0.89 8.06 -51.93 -0.42 0.47 16 30 H 0.08 1.20 7.14 -51.93 -0.37 0.83 16 LS Contribution 255.18 15.07 3.85 3.85 Total: -1.00 -35.17 255.18 -7.59 -42.76 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -4.33 Total: 0.22 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -0.41 Total: -19.68 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.09 Total: -39.94 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.64 Total: -15.13 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 12.60 SS G_CDS: -1.48 Total: 11.12 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -35.17 -7.59 -42.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042336186.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.668 kcal (2) G-P(sol) polarization free energy of solvation -35.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds