Wall clock time and date at job start Mon Mar 30 2020 03:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35649 * 116.99843 * 2 1 4 4 C 1.38448 * 120.26477 * 0.02562 * 3 2 1 5 5 C 1.38301 * 120.04727 * 179.97438 * 4 3 2 6 6 C 1.38818 * 120.59631 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.73549 * 179.97438 * 6 5 4 8 8 C 1.47198 * 109.46804 * 90.00178 * 7 6 5 9 9 N 6.96385 * 114.97604 * 22.94086 * 2 1 3 10 10 C 1.36493 * 120.53620 * 359.73681 * 6 5 4 11 11 C 1.40721 * 119.92753 * 0.51858 * 10 6 5 12 12 C 1.41158 * 120.29139 * 179.76334 * 11 10 6 13 13 H 1.07997 * 120.00014 * 149.61624 * 12 11 10 14 14 C 1.39935 * 119.99623 * 329.88213 * 12 11 10 15 15 N 1.30868 * 119.99912 * 161.85955 * 14 12 11 16 16 Si 1.86801 * 120.00317 * 341.85885 * 14 12 11 17 17 H 1.48507 * 109.46895 * 95.39466 * 16 14 12 18 18 H 1.48494 * 109.47350 * 215.39597 * 16 14 12 19 19 H 1.48501 * 109.46997 * 335.40025 * 16 14 12 20 20 H 1.08996 * 109.47628 * 59.99580 * 1 2 3 21 21 H 1.08997 * 109.47263 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47457 * 299.99774 * 1 2 3 23 23 H 1.07997 * 119.97608 * 0.02562 * 4 3 2 24 24 H 1.08001 * 119.70329 * 180.02562 * 5 4 3 25 25 H 1.08996 * 109.47611 * 210.00365 * 7 6 5 26 26 H 1.09000 * 109.46667 * 330.00616 * 7 6 5 27 27 H 1.08000 * 120.03819 * 180.26938 * 10 6 5 28 28 H 0.96998 * 119.99984 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2961 2.3732 0.0005 5 6 1.9286 3.6031 0.0011 6 6 3.3143 3.6850 0.0005 7 6 3.9834 5.0354 0.0005 8 6 4.2017 5.4746 1.3884 9 7 4.3694 5.8133 2.4605 10 6 4.0760 2.5523 0.0049 11 6 3.4557 1.2892 -0.0011 12 6 4.2359 0.1128 -0.0017 13 1 3.8603 -0.7845 0.4674 14 6 5.4984 0.1110 -0.6052 15 7 6.3616 -0.8284 -0.3137 16 14 5.9517 1.4495 -1.8269 17 1 6.6893 2.5308 -1.1254 18 1 6.8107 0.8758 -2.8937 19 1 4.7153 2.0060 -2.4326 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.2173 2.3212 0.0014 24 1 1.3391 4.5081 0.0019 25 1 4.9419 4.9660 -0.5137 26 1 3.3469 5.7561 -0.5128 27 1 5.1535 2.6254 0.0088 28 1 7.2369 -0.8295 -0.7318 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368097.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:20 Heat of formation + Delta-G solvation = -17.084012 kcal Electronic energy + Delta-G solvation = -13860.830124 eV Core-core repulsion = 11455.077492 eV Total energy + Delta-G solvation = -2405.752632 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.66655 -38.58889 -37.27517 -35.55794 -33.12569 -32.15370 -28.74052 -27.72242 -26.61016 -23.18443 -21.84371 -19.39320 -18.61679 -18.30929 -17.12811 -16.54415 -16.28122 -15.78047 -15.30760 -15.14000 -14.73516 -14.12672 -14.03211 -13.80725 -13.57762 -13.22029 -12.78096 -12.71375 -12.46147 -12.18860 -12.11879 -11.61364 -11.47666 -11.40267 -10.91505 -9.51574 -8.87890 -8.80275 -6.34015 0.74882 0.80195 1.31213 1.46643 1.57881 1.87667 1.88911 2.19913 2.61662 2.86220 3.23870 3.61489 4.14620 4.20737 4.39264 4.49694 4.50602 4.67762 4.75604 4.78089 4.85957 5.12541 5.24249 5.35266 5.71444 5.75962 5.98612 6.23415 6.34924 6.52303 6.68463 6.84043 7.12460 8.29152 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.014973 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.001638 B = 1869.620355 C = 3005.846129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.344 6.344 3 C 0.018 3.982 4 C -0.174 4.174 5 C -0.170 4.170 6 C -0.088 4.088 7 C 0.023 3.977 8 C 0.243 3.757 9 N -0.504 5.504 10 C -0.208 4.208 11 C 0.044 3.956 12 C -0.474 4.474 13 H 0.042 0.958 14 C 0.035 3.965 15 N -0.863 5.863 16 Si 0.963 3.037 17 H -0.245 1.245 18 H -0.283 1.283 19 H -0.237 1.237 20 H 0.061 0.939 21 H 0.105 0.895 22 H 0.055 0.945 23 H 0.137 0.863 24 H 0.146 0.854 25 H 0.131 0.869 26 H 0.162 0.838 27 H 0.105 0.895 28 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.385 9.497 -5.665 13.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.259 6.259 3 C -0.026 4.026 4 C -0.193 4.193 5 C -0.189 4.189 6 C -0.089 4.089 7 C -0.016 4.016 8 C -0.073 4.073 9 N -0.182 5.182 10 C -0.227 4.227 11 C 0.042 3.958 12 C -0.504 4.504 13 H 0.061 0.939 14 C -0.177 4.177 15 N -0.490 5.490 16 Si 0.784 3.216 17 H -0.169 1.169 18 H -0.210 1.210 19 H -0.160 1.160 20 H 0.080 0.920 21 H 0.124 0.876 22 H 0.074 0.926 23 H 0.155 0.845 24 H 0.164 0.836 25 H 0.149 0.851 26 H 0.179 0.821 27 H 0.123 0.877 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.823 9.644 -4.050 12.488 hybrid contribution 0.210 -0.677 -0.408 0.818 sum -6.613 8.967 -4.459 12.001 Atomic orbital electron populations 1.23147 0.78150 1.04289 1.01522 1.85983 1.21959 1.28235 1.89762 1.19542 0.92059 0.84452 1.06590 1.21152 0.99629 0.91935 1.06541 1.20677 0.93067 0.97045 1.08099 1.18985 0.93987 0.92939 1.03021 1.18465 1.05049 0.94518 0.83547 1.29722 0.91136 0.91098 0.95388 1.81196 1.11381 1.12052 1.13609 1.20593 0.98483 0.91699 1.11951 1.17357 0.89836 0.93574 0.95062 1.19185 0.99987 0.97512 1.33685 0.93921 1.27014 0.94223 0.98769 0.97662 1.69770 1.06639 1.34660 1.37931 0.85527 0.79893 0.78276 0.77869 1.16911 1.21038 1.15958 0.92000 0.87624 0.92605 0.84487 0.83608 0.85098 0.82083 0.87684 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 9.81 113.37 1.11 1.82 15 2 O -0.34 -15.43 9.85 -89.64 -0.88 -16.31 15 3 C 0.02 0.84 6.72 23.08 0.16 0.99 15 4 C -0.17 -6.25 9.04 22.33 0.20 -6.05 15 5 C -0.17 -5.39 9.68 22.42 0.22 -5.18 15 6 C -0.09 -2.96 5.05 -20.13 -0.10 -3.06 15 7 C 0.02 0.54 5.81 28.04 0.16 0.70 15 8 C 0.24 7.21 15.42 89.43 1.38 8.59 15 9 N -0.50 -18.06 18.54 20.01 0.37 -17.69 15 10 C -0.21 -8.98 6.74 22.47 0.15 -8.83 15 11 C 0.04 2.25 5.11 -21.20 -0.11 2.14 15 12 C -0.47 -27.49 9.19 23.40 0.22 -27.28 15 13 H 0.04 2.78 7.91 -2.91 -0.02 2.76 15 14 C 0.04 1.93 5.40 85.25 0.46 2.39 15 15 N -0.86 -48.93 13.93 21.83 0.30 -48.63 15 16 Si 0.96 40.74 24.52 68.60 1.68 42.42 15 17 H -0.24 -9.26 6.71 99.48 0.67 -8.60 15 18 H -0.28 -11.52 7.11 99.48 0.71 -10.81 15 19 H -0.24 -9.70 6.87 99.48 0.68 -9.02 15 20 H 0.06 1.59 7.67 -2.39 -0.02 1.57 15 21 H 0.11 2.63 8.14 -2.39 -0.02 2.61 15 22 H 0.06 1.48 7.67 -2.39 -0.02 1.46 15 23 H 0.14 3.97 6.31 -2.91 -0.02 3.95 15 24 H 0.15 3.38 8.06 -2.91 -0.02 3.36 15 25 H 0.13 2.52 8.08 -2.39 -0.02 2.50 15 26 H 0.16 2.15 8.08 -2.39 -0.02 2.13 15 27 H 0.11 4.53 4.76 -2.91 -0.01 4.52 15 28 H 0.29 14.78 8.30 -92.71 -0.77 14.01 15 Total: -1.00 -69.97 250.48 6.44 -63.54 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.12 Total: 10.44 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: 3.85 Total: -33.77 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: 0.68 Total: -66.32 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.88 Total: -16.31 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 1.68 Total: 42.42 kcal Total: -69.97 6.44 -63.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368097.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.454 kcal (2) G-P(sol) polarization free energy of solvation -69.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds