Wall clock time and date at job start Mon Mar 30 2020 02:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47245 * 2 1 4 4 C 1.47207 * 109.47065 * 239.99760 * 2 1 3 5 5 N 2.60800 * 109.47013 * 239.99780 * 2 1 3 6 6 O 1.42904 * 109.47131 * 120.00354 * 2 1 3 7 7 C 1.35678 * 116.99633 * 276.39571 * 6 2 1 8 8 C 1.39308 * 119.81863 * 185.48911 * 7 6 2 9 9 C 1.36437 * 120.18870 * 180.25841 * 8 7 6 10 10 C 1.40838 * 119.80587 * 359.49475 * 9 8 7 11 11 C 1.41220 * 120.17582 * 180.27558 * 10 9 8 12 12 H 1.07996 * 120.00148 * 333.47000 * 11 10 9 13 13 C 1.39890 * 119.99894 * 153.46904 * 11 10 9 14 14 N 1.30884 * 120.00013 * 346.82757 * 13 11 10 15 15 Si 1.86799 * 120.00098 * 166.82407 * 13 11 10 16 16 H 1.48500 * 109.46748 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46876 * 119.99862 * 15 13 11 18 18 H 1.48498 * 109.47277 * 240.00174 * 15 13 11 19 19 C 1.40827 * 119.64435 * 0.25608 * 10 9 8 20 20 C 1.36441 * 119.81140 * 0.02562 * 19 10 9 21 21 H 1.08998 * 109.47080 * 59.99865 * 1 2 3 22 22 H 1.08997 * 109.47245 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47137 * 300.00073 * 1 2 3 24 24 H 1.08004 * 119.90844 * 0.02562 * 8 7 6 25 25 H 1.07996 * 120.09653 * 179.77322 * 9 8 7 26 26 H 0.96995 * 120.00261 * 179.97438 * 14 13 11 27 27 H 1.08007 * 120.09671 * 180.02562 * 19 10 9 28 28 H 1.07999 * 119.90457 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6940 -1.2019 5 7 2.3992 -1.2295 -2.1294 6 8 2.0063 -0.6737 1.1668 7 6 2.0846 0.0539 2.3093 8 6 2.6477 -0.5096 3.4522 9 6 2.7255 0.2134 4.6066 10 6 2.2442 1.5367 4.6376 11 6 2.3262 2.2941 5.8267 12 1 2.3399 1.7956 6.7846 13 6 2.3896 3.6902 5.7637 14 7 2.6320 4.2835 4.6225 15 14 2.1281 4.7077 7.3083 16 1 1.8731 3.8041 8.4588 17 1 3.3418 5.5201 7.5770 18 1 0.9624 5.6075 7.1169 19 6 1.6813 2.1006 3.4764 20 6 1.6058 1.3619 2.3317 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 3.0202 -1.5230 3.4254 25 1 3.1589 -0.2261 5.4927 26 1 2.6756 5.2514 4.5787 27 1 1.3104 3.1148 3.4919 28 1 1.1747 1.7930 1.4402 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055278796.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:36 Heat of formation + Delta-G solvation = 7.951398 kcal Electronic energy + Delta-G solvation = -13550.989041 eV Core-core repulsion = 11146.322025 eV Total energy + Delta-G solvation = -2404.667016 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.34782 -37.01973 -35.97906 -33.46620 -31.58866 -29.69741 -29.02772 -25.34128 -24.01265 -21.44674 -20.75731 -17.66106 -17.54371 -17.23620 -15.27286 -15.05404 -14.37875 -14.07551 -13.56059 -13.22092 -12.91711 -12.66255 -12.57203 -12.27410 -11.94277 -11.81178 -11.51143 -11.26238 -11.05066 -10.99567 -10.66808 -10.10263 -9.83785 -9.43934 -9.13547 -7.74284 -7.09782 -6.77065 -4.34829 2.48548 2.68248 2.76968 2.89146 3.05759 3.10669 3.13759 3.73012 3.91047 4.45367 4.55988 5.02294 5.15238 5.58469 5.62956 5.80054 5.97968 6.17701 6.20319 6.58151 6.80687 6.99472 7.20582 7.30238 7.47222 7.50416 7.80306 7.92698 8.05883 8.30132 8.55727 8.83705 8.89494 10.17288 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.057842 B = 0.006456 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.964935 B = 4335.747712 C = 4575.511279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.185 3.815 3 H 0.111 0.889 4 C 0.225 3.775 5 N -0.424 5.424 6 O -0.315 6.315 7 C -0.015 4.015 8 C -0.107 4.107 9 C -0.194 4.194 10 C 0.089 3.911 11 C -0.460 4.460 12 H 0.078 0.922 13 C 0.073 3.927 14 N -0.803 5.803 15 Si 0.909 3.091 16 H -0.261 1.261 17 H -0.275 1.275 18 H -0.273 1.273 19 C -0.131 4.131 20 C -0.174 4.174 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.088 0.912 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.279 0.721 27 H 0.126 0.874 28 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.975 -1.002 -2.907 5.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.124 3.876 3 H 0.129 0.871 4 C -0.094 4.094 5 N -0.103 5.103 6 O -0.229 6.229 7 C -0.057 4.057 8 C -0.126 4.126 9 C -0.214 4.214 10 C 0.087 3.913 11 C -0.490 4.490 12 H 0.096 0.904 13 C -0.144 4.144 14 N -0.429 5.429 15 Si 0.734 3.266 16 H -0.185 1.185 17 H -0.201 1.201 18 H -0.198 1.198 19 C -0.150 4.150 20 C -0.193 4.193 21 H 0.090 0.910 22 H 0.089 0.911 23 H 0.107 0.893 24 H 0.116 0.884 25 H 0.119 0.881 26 H 0.090 0.910 27 H 0.144 0.856 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.314 -1.758 -4.380 5.767 hybrid contribution -0.180 0.987 0.948 1.381 sum -3.494 -0.771 -3.432 4.957 Atomic orbital electron populations 1.22327 0.92646 1.04006 1.04061 1.19208 0.94529 0.95050 0.78797 0.87149 1.28896 0.92803 0.93327 0.94337 1.81139 1.08577 1.08178 1.12378 1.85913 1.83415 1.38132 1.15489 1.18497 1.09942 0.92047 0.85246 1.19623 1.02491 0.98948 0.91530 1.20635 1.07522 0.96808 0.96455 1.17645 0.89204 0.91077 0.93417 1.19541 1.44603 0.90863 0.93958 0.90432 1.25880 0.92327 0.98655 0.97503 1.69804 1.35412 1.11317 1.26398 0.86238 0.78654 0.79683 0.82008 1.18477 1.20059 1.19796 1.21032 1.01313 1.00221 0.92452 1.20656 1.05789 0.93692 0.99127 0.90989 0.91125 0.89329 0.88379 0.88075 0.90998 0.85631 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 9.09 37.16 0.34 -1.71 15 2 C 0.18 2.68 2.68 -29.52 -0.08 2.60 15 3 H 0.11 1.50 6.37 -51.93 -0.33 1.17 15 4 C 0.22 3.42 15.03 -20.76 -0.31 3.11 15 5 N -0.42 -7.12 18.54 42.15 0.78 -6.34 15 6 O -0.31 -5.83 9.75 -18.73 -0.18 -6.01 15 7 C -0.01 -0.30 6.61 -38.78 -0.26 -0.56 15 8 C -0.11 -2.32 9.92 -39.83 -0.40 -2.72 15 9 C -0.19 -4.51 9.74 -39.25 -0.38 -4.90 15 10 C 0.09 2.23 5.57 -106.80 -0.59 1.64 15 11 C -0.46 -11.62 9.05 -37.83 -0.34 -11.96 15 12 H 0.08 1.89 7.88 -52.49 -0.41 1.48 15 13 C 0.07 1.74 5.22 -17.34 -0.09 1.65 15 14 N -0.80 -19.80 10.81 55.54 0.60 -19.20 15 15 Si 0.91 18.00 29.58 -169.99 -5.03 12.97 15 16 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 17 H -0.28 -5.41 7.11 56.52 0.40 -5.01 15 18 H -0.27 -5.31 7.11 56.52 0.40 -4.90 15 19 C -0.13 -3.13 8.62 -39.25 -0.34 -3.47 15 20 C -0.17 -3.62 8.10 -39.83 -0.32 -3.95 15 21 H 0.07 0.68 8.14 -51.93 -0.42 0.25 15 22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.09 1.11 6.75 -51.93 -0.35 0.76 15 24 H 0.10 1.93 8.06 -52.48 -0.42 1.51 15 25 H 0.10 2.19 8.06 -52.49 -0.42 1.77 15 26 H 0.28 6.27 8.30 -40.82 -0.34 5.93 15 27 H 0.13 3.11 6.13 -52.48 -0.32 2.78 15 28 H 0.10 1.75 5.34 -52.49 -0.28 1.47 15 LS Contribution 252.81 15.07 3.81 3.81 Total: -1.00 -26.82 252.81 -5.32 -32.14 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -2.52 Total: 2.89 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -2.78 Total: -20.26 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 1.38 Total: -25.54 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.18 Total: -6.01 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -26.82 -5.32 -32.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055278796.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.088 kcal (2) G-P(sol) polarization free energy of solvation -26.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds