Wall clock time and date at job start Mon Mar 30 2020 02:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47245 * 2 1 4 4 C 1.47207 * 109.47065 * 239.99760 * 2 1 3 5 5 N 2.60800 * 109.47013 * 239.99780 * 2 1 3 6 6 O 1.42904 * 109.47131 * 120.00354 * 2 1 3 7 7 C 1.35678 * 116.99633 * 276.39571 * 6 2 1 8 8 C 1.39308 * 119.81863 * 185.48911 * 7 6 2 9 9 C 1.36437 * 120.18870 * 180.25841 * 8 7 6 10 10 C 1.40838 * 119.80587 * 359.49475 * 9 8 7 11 11 C 1.41220 * 120.17582 * 180.27558 * 10 9 8 12 12 H 1.07996 * 120.00148 * 333.47000 * 11 10 9 13 13 C 1.39890 * 119.99894 * 153.46904 * 11 10 9 14 14 N 1.30884 * 120.00013 * 346.82757 * 13 11 10 15 15 Si 1.86799 * 120.00098 * 166.82407 * 13 11 10 16 16 H 1.48500 * 109.46748 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46876 * 119.99862 * 15 13 11 18 18 H 1.48498 * 109.47277 * 240.00174 * 15 13 11 19 19 C 1.40827 * 119.64435 * 0.25608 * 10 9 8 20 20 C 1.36441 * 119.81140 * 0.02562 * 19 10 9 21 21 H 1.08998 * 109.47080 * 59.99865 * 1 2 3 22 22 H 1.08997 * 109.47245 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47137 * 300.00073 * 1 2 3 24 24 H 1.08004 * 119.90844 * 0.02562 * 8 7 6 25 25 H 1.07996 * 120.09653 * 179.77322 * 9 8 7 26 26 H 0.96995 * 120.00261 * 179.97438 * 14 13 11 27 27 H 1.08007 * 120.09671 * 180.02562 * 19 10 9 28 28 H 1.07999 * 119.90457 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6940 -1.2019 5 7 2.3992 -1.2295 -2.1294 6 8 2.0063 -0.6737 1.1668 7 6 2.0846 0.0539 2.3093 8 6 2.6477 -0.5096 3.4522 9 6 2.7255 0.2134 4.6066 10 6 2.2442 1.5367 4.6376 11 6 2.3262 2.2941 5.8267 12 1 2.3399 1.7956 6.7846 13 6 2.3896 3.6902 5.7637 14 7 2.6320 4.2835 4.6225 15 14 2.1281 4.7077 7.3083 16 1 1.8731 3.8041 8.4588 17 1 3.3418 5.5201 7.5770 18 1 0.9624 5.6075 7.1169 19 6 1.6813 2.1006 3.4764 20 6 1.6058 1.3619 2.3317 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 3.0202 -1.5230 3.4254 25 1 3.1589 -0.2261 5.4927 26 1 2.6756 5.2514 4.5787 27 1 1.3104 3.1148 3.4919 28 1 1.1747 1.7930 1.4402 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055278796.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:36 Heat of formation + Delta-G solvation = -6.113321 kcal Electronic energy + Delta-G solvation = -13551.598933 eV Core-core repulsion = 11146.322025 eV Total energy + Delta-G solvation = -2405.276908 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.86479 -38.58714 -37.38074 -35.20734 -32.85009 -31.42746 -30.72643 -26.96416 -25.30447 -23.15723 -22.43883 -19.24799 -19.04511 -18.79919 -16.96092 -16.36186 -15.88229 -15.70724 -15.00312 -14.69629 -14.41622 -14.14925 -13.97339 -13.61006 -13.52623 -13.21570 -12.91926 -12.79582 -12.61744 -12.32921 -12.25247 -11.66963 -11.55203 -11.13621 -10.87188 -9.48723 -8.85432 -8.53375 -6.20110 0.96088 1.11590 1.22851 1.44299 1.53436 1.56923 1.57698 2.26989 2.46795 2.79065 3.15334 3.75372 3.92404 4.05628 4.38552 4.47523 4.68211 4.83354 4.97861 5.07119 5.20427 5.26785 5.43926 5.57312 5.71703 6.02250 6.12943 6.27053 6.30457 6.58654 6.79962 7.01539 7.12011 8.42728 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.057842 B = 0.006456 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.964935 B = 4335.747712 C = 4575.511279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.181 3.819 3 H 0.126 0.874 4 C 0.243 3.757 5 N -0.451 5.451 6 O -0.324 6.324 7 C 0.003 3.997 8 C -0.119 4.119 9 C -0.205 4.205 10 C 0.055 3.945 11 C -0.497 4.497 12 H 0.072 0.928 13 C 0.034 3.966 14 N -0.832 5.832 15 Si 0.979 3.021 16 H -0.261 1.261 17 H -0.270 1.270 18 H -0.265 1.265 19 C -0.150 4.150 20 C -0.168 4.168 21 H 0.102 0.898 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.117 0.883 25 H 0.106 0.894 26 H 0.286 0.714 27 H 0.113 0.887 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 -0.839 -3.624 5.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.121 3.879 3 H 0.143 0.857 4 C -0.076 4.076 5 N -0.129 5.129 6 O -0.239 6.239 7 C -0.040 4.040 8 C -0.138 4.138 9 C -0.224 4.224 10 C 0.053 3.947 11 C -0.527 4.527 12 H 0.090 0.910 13 C -0.179 4.179 14 N -0.460 5.460 15 Si 0.801 3.199 16 H -0.185 1.185 17 H -0.196 1.196 18 H -0.189 1.189 19 C -0.170 4.170 20 C -0.187 4.187 21 H 0.121 0.879 22 H 0.092 0.908 23 H 0.103 0.897 24 H 0.135 0.865 25 H 0.124 0.876 26 H 0.096 0.904 27 H 0.131 0.869 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.978 -1.613 -5.117 6.680 hybrid contribution 0.029 0.808 1.008 1.293 sum -3.950 -0.805 -4.109 5.756 Atomic orbital electron populations 1.22333 0.90173 1.04699 1.05365 1.19577 0.96263 0.95170 0.76886 0.85666 1.28903 0.91987 0.92638 0.94026 1.81171 1.09463 1.08971 1.13311 1.85886 1.83586 1.38594 1.15819 1.18523 1.07864 0.91805 0.85812 1.19883 1.02587 0.99845 0.91482 1.20789 1.07650 0.96534 0.97444 1.17986 0.90403 0.92126 0.94182 1.19750 1.46890 0.92076 0.93990 0.90963 1.26624 0.91558 0.99190 1.00546 1.69847 1.36099 1.11925 1.28125 0.85197 0.78734 0.77915 0.78088 1.18493 1.19554 1.18930 1.21026 1.02371 1.00161 0.93420 1.20915 1.04887 0.93463 0.99405 0.87926 0.90846 0.89746 0.86474 0.87582 0.90352 0.86942 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 9.09 71.98 0.65 -2.73 15 2 C 0.18 4.67 2.68 28.79 0.08 4.74 15 3 H 0.13 2.94 6.37 -2.39 -0.02 2.93 15 4 C 0.24 6.75 15.03 89.44 1.34 8.10 15 5 N -0.45 -14.21 18.54 20.01 0.37 -13.84 15 6 O -0.32 -11.14 9.75 -89.95 -0.88 -12.02 15 7 C 0.00 0.13 6.61 22.79 0.15 0.28 15 8 C -0.12 -5.06 9.92 22.11 0.22 -4.84 15 9 C -0.20 -9.56 9.74 22.49 0.22 -9.34 15 10 C 0.06 2.82 5.57 -21.28 -0.12 2.70 15 11 C -0.50 -25.78 9.05 23.40 0.21 -25.57 15 12 H 0.07 3.65 7.88 -2.91 -0.02 3.63 15 13 C 0.03 1.65 5.22 85.23 0.44 2.10 15 14 N -0.83 -41.54 10.81 21.82 0.24 -41.31 15 15 Si 0.98 37.09 29.58 68.60 2.03 39.12 15 16 H -0.26 -9.77 7.11 99.48 0.71 -9.06 15 17 H -0.27 -9.95 7.11 99.48 0.71 -9.24 15 18 H -0.26 -9.58 7.11 99.48 0.71 -8.88 15 19 C -0.15 -7.22 8.62 22.48 0.19 -7.02 15 20 C -0.17 -6.74 8.10 22.11 0.18 -6.56 15 21 H 0.10 1.48 8.14 -2.39 -0.02 1.47 15 22 H 0.07 1.47 8.14 -2.39 -0.02 1.45 15 23 H 0.08 1.83 6.75 -2.38 -0.02 1.82 15 24 H 0.12 4.43 8.06 -2.91 -0.02 4.41 15 25 H 0.11 4.68 8.06 -2.91 -0.02 4.66 15 26 H 0.29 12.90 8.30 -92.71 -0.77 12.13 15 27 H 0.11 5.65 6.13 -2.91 -0.02 5.63 15 28 H 0.14 4.34 5.34 -2.91 -0.02 4.32 15 Total: -1.00 -57.43 252.81 6.51 -50.92 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 1.18 Total: 15.26 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 3.58 Total: -38.13 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.61 Total: -55.15 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -0.88 Total: -12.02 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Total: -57.43 6.51 -50.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055278796.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.808 kcal (2) G-P(sol) polarization free energy of solvation -57.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds