Wall clock time and date at job start Mon Mar 30 2020 02:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46961 * 194.69276 * 3 2 1 5 5 C 1.39782 * 120.00087 * 180.02562 * 4 3 2 6 6 C 1.38956 * 120.00487 * 359.72338 * 5 4 3 7 7 C 1.38013 * 119.99008 * 179.72309 * 6 5 4 8 8 C 1.38899 * 120.00511 * 0.55423 * 7 6 5 9 9 O 1.35798 * 119.98862 * 179.69977 * 8 7 6 10 10 C 1.34818 * 116.99804 * 174.48089 * 9 8 7 11 11 H 1.07997 * 119.99862 * 5.05034 * 10 9 8 12 12 C 1.38618 * 119.99980 * 185.06170 * 10 9 8 13 13 N 1.31583 * 120.00081 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99913 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47064 * 90.00834 * 14 12 10 16 16 H 1.48501 * 109.46801 * 210.00367 * 14 12 10 17 17 H 1.48492 * 109.47158 * 330.00530 * 14 12 10 18 18 C 1.38893 * 120.01764 * 359.72264 * 8 7 6 19 19 C 1.38018 * 120.00244 * 359.97438 * 18 8 7 20 20 H 4.40640 * 5.51410 * 179.97438 * 4 1 2 21 21 H 1.08999 * 109.47223 * 74.69215 * 3 2 1 22 22 H 1.08997 * 109.47280 * 314.69122 * 3 2 1 23 23 H 0.97006 * 120.00257 * 0.02562 * 4 3 2 24 24 H 1.07998 * 120.00178 * 0.02562 * 6 5 4 25 25 H 1.07995 * 119.99091 * 180.25449 * 7 6 5 26 26 H 0.96992 * 119.99873 * 179.97438 * 13 12 10 27 27 H 1.07997 * 120.00388 * 179.97438 * 18 8 7 28 28 H 1.07998 * 119.99940 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3369 0.3503 5 6 4.5079 1.5848 0.4146 6 6 5.4114 0.5624 0.1519 7 6 6.7681 0.8089 0.2098 8 6 7.2303 2.0759 0.5420 9 8 8.5653 2.3165 0.6049 10 6 8.9480 3.5913 0.8197 11 1 8.2066 4.3521 1.0141 12 6 10.2930 3.9254 0.7906 13 7 10.6666 5.1695 1.0008 14 14 11.5753 2.6092 0.4546 15 1 11.8213 2.5195 -1.0071 16 1 12.8400 2.9617 1.1487 17 1 11.0841 1.3004 0.9552 18 6 6.3274 3.0966 0.8103 19 6 4.9706 2.8523 0.7464 20 1 -1.0502 -0.0004 -0.0003 21 1 3.0095 -0.2705 -0.9912 22 1 3.0097 -0.7219 0.7305 23 1 2.5030 2.0498 0.5377 24 1 5.0520 -0.4238 -0.1025 25 1 7.4704 0.0153 0.0016 26 1 11.6077 5.4032 0.9808 27 1 6.6870 4.0816 1.0690 28 1 4.2685 3.6459 0.9554 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068989660.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:43 Heat of formation + Delta-G solvation = 61.806975 kcal Electronic energy + Delta-G solvation = -13204.663585 eV Core-core repulsion = 10802.331922 eV Total energy + Delta-G solvation = -2402.331663 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.18991 -37.39248 -35.15709 -32.67966 -32.10491 -30.32176 -28.34640 -26.14169 -24.50834 -22.21760 -20.66221 -18.67574 -17.63948 -17.33422 -16.39967 -15.43270 -14.70537 -14.41889 -14.08475 -13.68996 -13.57760 -13.15365 -12.71508 -12.17836 -12.09520 -11.84707 -11.59887 -10.89596 -10.82734 -10.55490 -10.49953 -10.09791 -9.29947 -9.23161 -8.55969 -8.26360 -6.54721 -6.30513 -3.95150 2.10446 2.38396 2.43707 2.60314 3.28519 3.32023 3.47286 3.92756 4.19394 4.32763 4.58742 5.01567 5.20160 5.36652 5.48756 5.56623 5.63007 5.68092 6.10887 6.15050 6.41565 6.76723 6.77535 6.98155 7.31573 7.33526 7.46413 7.75456 7.90421 8.06312 8.18533 9.05947 9.71574 10.77958 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.081258 B = 0.005436 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.497694 B = 5149.761682 C = 5475.590194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.195 4.195 3 C 0.240 3.760 4 N -0.758 5.758 5 C 0.129 3.871 6 C -0.149 4.149 7 C -0.149 4.149 8 C 0.118 3.882 9 O -0.227 6.227 10 C -0.385 4.385 11 H 0.103 0.897 12 C 0.059 3.941 13 N -0.887 5.887 14 Si 0.906 3.094 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.260 1.260 18 C -0.176 4.176 19 C -0.141 4.141 20 H 0.219 0.781 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.395 0.605 24 H 0.114 0.886 25 H 0.118 0.882 26 H 0.277 0.723 27 H 0.135 0.865 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.193 -8.813 -1.729 16.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.195 4.195 3 C 0.116 3.884 4 N -0.394 5.394 5 C 0.032 3.968 6 C -0.172 4.172 7 C -0.169 4.169 8 C 0.067 3.933 9 O -0.133 6.133 10 C -0.461 4.461 11 H 0.121 0.879 12 C -0.143 4.143 13 N -0.526 5.526 14 Si 0.732 3.268 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.185 1.185 18 C -0.195 4.195 19 C -0.163 4.163 20 H 0.236 0.764 21 H 0.095 0.905 22 H 0.095 0.905 23 H 0.228 0.772 24 H 0.132 0.868 25 H 0.136 0.864 26 H 0.087 0.913 27 H 0.152 0.848 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.764 -9.005 -1.778 16.544 hybrid contribution 0.081 0.000 -0.041 0.091 sum -13.682 -9.005 -1.820 16.481 Atomic orbital electron populations 1.24962 0.95932 0.98585 1.01438 1.23178 0.94540 1.01637 1.00150 1.17981 0.82631 0.86950 1.00837 1.44163 1.03570 1.10290 1.81393 1.17420 0.82665 0.94073 1.02669 1.20170 0.91969 0.97533 1.07496 1.20010 0.94577 0.95418 1.06881 1.18976 0.84108 0.93375 0.96831 1.83577 1.17890 1.30478 1.81392 1.20707 0.94093 0.82224 1.49034 0.87921 1.24434 0.96969 0.96616 0.96246 1.69662 1.17708 1.16717 1.48548 0.86177 0.79721 0.82186 0.78749 1.20078 1.21008 1.18451 1.21116 0.92108 1.00535 1.05761 1.20292 0.95276 0.94748 1.05951 0.76407 0.90519 0.90528 0.77154 0.86848 0.86422 0.91304 0.84784 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.73 19.25 29.55 0.57 -1.16 15 2 C -0.19 -2.10 13.46 -37.12 -0.50 -2.60 15 3 C 0.24 2.71 5.39 -6.83 -0.04 2.68 15 4 N -0.76 -10.23 5.72 -61.44 -0.35 -10.59 15 5 C 0.13 2.17 6.66 -83.70 -0.56 1.61 15 6 C -0.15 -2.53 9.31 -39.40 -0.37 -2.90 15 7 C -0.15 -2.95 9.98 -39.42 -0.39 -3.34 15 8 C 0.12 2.75 6.65 -39.09 -0.26 2.49 15 9 O -0.23 -6.08 8.58 -0.06 0.00 -6.08 15 10 C -0.38 -11.01 9.94 30.87 0.31 -10.70 15 11 H 0.10 2.99 5.43 -52.49 -0.28 2.71 15 12 C 0.06 1.69 5.49 -17.52 -0.10 1.60 15 13 N -0.89 -26.10 13.96 55.48 0.77 -25.32 15 14 Si 0.91 22.11 28.62 -169.99 -4.86 17.24 15 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 17 H -0.26 -6.36 7.11 56.52 0.40 -5.96 15 18 C -0.18 -3.81 9.16 -39.42 -0.36 -4.17 15 19 C -0.14 -2.56 9.89 -39.40 -0.39 -2.95 15 20 H 0.22 1.15 7.80 -54.08 -0.42 0.73 15 21 H 0.08 0.82 7.96 -51.93 -0.41 0.41 15 22 H 0.08 0.82 7.94 -51.93 -0.41 0.41 15 23 H 0.39 4.89 8.46 -40.82 -0.35 4.54 15 24 H 0.11 1.57 6.73 -52.49 -0.35 1.22 15 25 H 0.12 2.16 8.06 -52.49 -0.42 1.73 15 26 H 0.28 7.55 8.31 -40.82 -0.34 7.21 15 27 H 0.13 3.05 5.63 -52.49 -0.30 2.76 15 28 H 0.11 1.73 8.06 -52.49 -0.42 1.31 15 LS Contribution 257.75 15.07 3.88 3.88 Total: -1.00 -30.59 257.75 -5.15 -35.74 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -2.51 Total: 4.57 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -2.08 Total: -19.45 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.42 Total: -35.91 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: 0.00 Total: -6.08 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.86 Total: 17.24 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.59 -5.15 -35.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068989660.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.550 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds