Wall clock time and date at job start Mon Mar 30 2020 02:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46961 * 194.69276 * 3 2 1 5 5 C 1.39782 * 120.00087 * 180.02562 * 4 3 2 6 6 C 1.38956 * 120.00487 * 359.72338 * 5 4 3 7 7 C 1.38013 * 119.99008 * 179.72309 * 6 5 4 8 8 C 1.38899 * 120.00511 * 0.55423 * 7 6 5 9 9 O 1.35798 * 119.98862 * 179.69977 * 8 7 6 10 10 C 1.34818 * 116.99804 * 174.48089 * 9 8 7 11 11 H 1.07997 * 119.99862 * 5.05034 * 10 9 8 12 12 C 1.38618 * 119.99980 * 185.06170 * 10 9 8 13 13 N 1.31583 * 120.00081 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99913 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47064 * 90.00834 * 14 12 10 16 16 H 1.48501 * 109.46801 * 210.00367 * 14 12 10 17 17 H 1.48492 * 109.47158 * 330.00530 * 14 12 10 18 18 C 1.38893 * 120.01764 * 359.72264 * 8 7 6 19 19 C 1.38018 * 120.00244 * 359.97438 * 18 8 7 20 20 H 4.40640 * 5.51410 * 179.97438 * 4 1 2 21 21 H 1.08999 * 109.47223 * 74.69215 * 3 2 1 22 22 H 1.08997 * 109.47280 * 314.69122 * 3 2 1 23 23 H 0.97006 * 120.00257 * 0.02562 * 4 3 2 24 24 H 1.07998 * 120.00178 * 0.02562 * 6 5 4 25 25 H 1.07995 * 119.99091 * 180.25449 * 7 6 5 26 26 H 0.96992 * 119.99873 * 179.97438 * 13 12 10 27 27 H 1.07997 * 120.00388 * 179.97438 * 18 8 7 28 28 H 1.07998 * 119.99940 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3369 0.3503 5 6 4.5079 1.5848 0.4146 6 6 5.4114 0.5624 0.1519 7 6 6.7681 0.8089 0.2098 8 6 7.2303 2.0759 0.5420 9 8 8.5653 2.3165 0.6049 10 6 8.9480 3.5913 0.8197 11 1 8.2066 4.3521 1.0141 12 6 10.2930 3.9254 0.7906 13 7 10.6666 5.1695 1.0008 14 14 11.5753 2.6092 0.4546 15 1 11.8213 2.5195 -1.0071 16 1 12.8400 2.9617 1.1487 17 1 11.0841 1.3004 0.9552 18 6 6.3274 3.0966 0.8103 19 6 4.9706 2.8523 0.7464 20 1 -1.0502 -0.0004 -0.0003 21 1 3.0095 -0.2705 -0.9912 22 1 3.0097 -0.7219 0.7305 23 1 2.5030 2.0498 0.5377 24 1 5.0520 -0.4238 -0.1025 25 1 7.4704 0.0153 0.0016 26 1 11.6077 5.4032 0.9808 27 1 6.6870 4.0816 1.0690 28 1 4.2685 3.6459 0.9554 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068989660.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:43 Heat of formation + Delta-G solvation = 41.887583 kcal Electronic energy + Delta-G solvation = -13205.527354 eV Core-core repulsion = 10802.331922 eV Total energy + Delta-G solvation = -2403.195432 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.81800 -38.94895 -36.39833 -34.37478 -33.48976 -31.85059 -29.69062 -27.68046 -26.15351 -23.75305 -22.24348 -19.89959 -19.23567 -19.03364 -17.69763 -16.85515 -16.06526 -15.73265 -15.56693 -15.41401 -15.27522 -14.39173 -14.31070 -13.93124 -13.79298 -13.30608 -13.14715 -12.69446 -12.39202 -11.91757 -11.55618 -11.45223 -11.18920 -10.91499 -10.27018 -9.79894 -8.42364 -8.02816 -6.10493 0.56328 0.86930 1.34729 1.39430 1.55938 1.57351 1.86806 2.33975 2.85194 2.90496 3.17227 3.30078 3.44894 4.10830 4.16400 4.51417 4.56754 4.64805 4.65552 4.89913 5.05851 5.21076 5.23540 5.47607 5.62126 5.82883 5.86629 6.13594 6.51219 6.63834 6.90302 6.93378 7.73101 8.69885 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.081258 B = 0.005436 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.497694 B = 5149.761682 C = 5475.590194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.240 4.240 3 C 0.236 3.764 4 N -0.748 5.748 5 C 0.157 3.843 6 C -0.145 4.145 7 C -0.141 4.141 8 C 0.068 3.932 9 O -0.253 6.253 10 C -0.391 4.391 11 H 0.078 0.922 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.973 3.027 15 H -0.267 1.267 16 H -0.270 1.270 17 H -0.262 1.262 18 C -0.188 4.188 19 C -0.150 4.150 20 H 0.251 0.749 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.402 0.598 24 H 0.155 0.845 25 H 0.132 0.868 26 H 0.282 0.718 27 H 0.108 0.892 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.574 -11.339 -2.355 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.240 4.240 3 C 0.113 3.887 4 N -0.383 5.383 5 C 0.056 3.944 6 C -0.167 4.167 7 C -0.160 4.160 8 C 0.019 3.981 9 O -0.162 6.162 10 C -0.468 4.468 11 H 0.095 0.905 12 C -0.194 4.194 13 N -0.573 5.573 14 Si 0.795 3.205 15 H -0.192 1.192 16 H -0.195 1.195 17 H -0.187 1.187 18 C -0.208 4.208 19 C -0.172 4.172 20 H 0.268 0.732 21 H 0.105 0.895 22 H 0.105 0.895 23 H 0.237 0.763 24 H 0.172 0.828 25 H 0.150 0.850 26 H 0.091 0.909 27 H 0.126 0.874 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.229 -11.555 -2.410 20.068 hybrid contribution 0.353 0.682 0.133 0.779 sum -15.877 -10.873 -2.277 19.377 Atomic orbital electron populations 1.25828 0.96784 0.96207 0.99364 1.23252 0.94899 1.03763 1.02114 1.18111 0.83504 0.85435 1.01623 1.44308 1.02177 1.11879 1.79921 1.17538 0.84386 0.93171 0.99281 1.20559 0.90624 0.99354 1.06197 1.20320 0.96241 0.94168 1.05304 1.19495 0.83188 0.95395 1.00016 1.83505 1.19976 1.28911 1.83823 1.20674 0.94105 0.83003 1.49028 0.90475 1.25279 0.98939 0.98861 0.96357 1.69754 1.18419 1.18491 1.50620 0.85179 0.77292 0.79040 0.78949 1.19236 1.19486 1.18666 1.21065 0.93769 0.99335 1.06591 1.20457 0.94082 0.96484 1.06177 0.73239 0.89514 0.89476 0.76322 0.82772 0.84984 0.90871 0.87402 0.84984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 19.25 74.32 1.43 -0.86 15 2 C -0.24 -4.31 13.46 31.13 0.42 -3.89 15 3 C 0.24 4.41 5.39 84.57 0.46 4.87 15 4 N -0.75 -17.52 5.72 -348.29 -1.99 -19.51 15 5 C 0.16 4.80 6.66 38.22 0.25 5.06 15 6 C -0.15 -4.45 9.31 22.39 0.21 -4.24 15 7 C -0.14 -5.38 9.98 22.37 0.22 -5.16 15 8 C 0.07 3.22 6.65 22.59 0.15 3.37 15 9 O -0.25 -14.08 8.58 -23.15 -0.20 -14.28 15 10 C -0.39 -23.65 9.94 67.91 0.68 -22.97 15 11 H 0.08 4.88 5.43 -2.91 -0.02 4.86 15 12 C 0.00 0.15 5.49 84.82 0.47 0.62 15 13 N -0.93 -57.00 13.96 21.61 0.30 -56.70 15 14 Si 0.97 46.63 28.62 68.60 1.96 48.59 15 15 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15 17 H -0.26 -12.50 7.11 99.48 0.71 -11.79 15 18 C -0.19 -8.45 9.16 22.37 0.20 -8.24 15 19 C -0.15 -5.32 9.89 22.39 0.22 -5.10 15 20 H 0.25 1.42 7.80 -4.41 -0.03 1.38 15 21 H 0.09 1.48 7.96 -2.39 -0.02 1.46 15 22 H 0.09 1.48 7.94 -2.39 -0.02 1.46 15 23 H 0.40 8.58 8.46 -92.70 -0.78 7.79 15 24 H 0.15 3.49 6.73 -2.91 -0.02 3.47 15 25 H 0.13 4.59 8.06 -2.91 -0.02 4.57 15 26 H 0.28 15.86 8.31 -92.71 -0.77 15.09 15 27 H 0.11 5.34 5.63 -2.91 -0.02 5.32 15 28 H 0.13 4.00 8.06 -2.91 -0.02 3.97 15 Total: -1.00 -69.05 257.75 5.18 -63.87 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.39 Total: 14.58 kcal Atomic # 6 Polarization: -41.25 SS G_CDS: 4.71 Total: -36.55 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -1.69 Total: -76.21 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.20 Total: -14.28 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.96 Total: 48.59 kcal Total: -69.05 5.18 -63.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068989660.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.756 kcal (2) G-P(sol) polarization free energy of solvation -69.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds