Wall clock time and date at job start Mon Mar 30 2020 03:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35642 * 117.00119 * 2 1 4 4 C 1.38449 * 120.26207 * 359.97438 * 3 2 1 5 5 C 1.38305 * 120.04908 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.70584 * 180.02562 * 5 4 3 7 7 C 1.47202 * 109.46586 * 90.00317 * 6 5 4 8 8 N 6.16256 * 82.57291 * 23.71914 * 2 1 3 9 9 C 1.38823 * 120.59367 * 0.02562 * 5 4 3 10 10 C 1.36493 * 120.53599 * 359.73063 * 9 5 4 11 11 C 1.40721 * 119.92798 * 0.52340 * 10 9 5 12 12 C 1.41159 * 120.29058 * 179.76068 * 11 10 9 13 13 H 1.08002 * 119.99755 * 154.42554 * 12 11 10 14 14 C 1.39926 * 119.99787 * 334.43021 * 12 11 10 15 15 N 1.30865 * 120.00052 * 334.65814 * 14 12 11 16 16 Si 1.86799 * 120.00070 * 154.66119 * 14 12 11 17 17 H 1.48504 * 109.47419 * 180.02562 * 16 14 12 18 18 H 1.48505 * 109.47096 * 299.99555 * 16 14 12 19 19 H 1.48497 * 109.47317 * 59.99505 * 16 14 12 20 20 H 1.09001 * 109.47088 * 299.99832 * 1 2 3 21 21 H 1.08998 * 109.47326 * 60.00009 * 1 2 3 22 22 H 1.09004 * 109.46939 * 180.02562 * 1 2 3 23 23 H 1.07993 * 119.97877 * 0.02562 * 4 3 2 24 24 H 1.08995 * 109.47319 * 210.00429 * 6 5 4 25 25 H 1.08997 * 109.47151 * 330.01007 * 6 5 4 26 26 H 1.07997 * 119.73005 * 179.97438 * 9 5 4 27 27 H 1.07998 * 120.03218 * 180.25951 * 10 9 5 28 28 H 0.97001 * 120.00173 * 354.20108 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2961 2.3731 -0.0005 5 6 1.9286 3.6031 -0.0011 6 6 1.1061 4.8658 -0.0011 7 6 0.8389 5.2773 1.3868 8 7 0.6324 5.5947 2.4581 9 6 3.3144 3.6849 -0.0016 10 6 4.0760 2.5522 0.0039 11 6 3.4557 1.2891 -0.0009 12 6 4.2360 0.1128 -0.0004 13 1 3.8298 -0.8044 0.4000 14 6 5.5356 0.1350 -0.5185 15 7 5.8659 1.0256 -1.4187 16 14 6.7989 -1.1066 0.0746 17 1 8.0888 -0.8722 -0.6231 18 1 6.9939 -0.9534 1.5388 19 1 6.3188 -2.4806 -0.2198 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.2174 2.3212 -0.0005 24 1 1.6532 5.6559 -0.5153 25 1 0.1618 4.6844 -0.5143 26 1 3.7938 4.6527 -0.0024 27 1 5.1535 2.6254 0.0077 28 1 5.1903 1.6152 -1.7885 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075577170.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:24 Heat of formation + Delta-G solvation = -23.708938 kcal Electronic energy + Delta-G solvation = -13758.446083 eV Core-core repulsion = 11352.406173 eV Total energy + Delta-G solvation = -2406.039911 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.63594 -38.40247 -37.46373 -35.94134 -32.83835 -30.72690 -29.59658 -27.97541 -25.92044 -22.64643 -22.40226 -19.95020 -18.67788 -17.68442 -16.95859 -16.45752 -16.28815 -15.66745 -15.22703 -15.16176 -14.69421 -14.38333 -13.95157 -13.66132 -13.46914 -13.00933 -12.71869 -12.55941 -12.35755 -12.05826 -11.93792 -11.73227 -11.61909 -11.22534 -10.82491 -9.51308 -9.27970 -8.84843 -6.30872 0.76051 0.99511 1.51751 1.61295 1.80862 1.89417 1.91230 2.34933 2.64432 2.86888 3.29581 3.64441 4.17894 4.27809 4.42110 4.46894 4.49430 4.67116 4.72995 4.88137 4.99966 5.14250 5.33874 5.55656 5.72219 5.84571 6.00444 6.16647 6.37030 6.52413 6.70265 6.91168 7.15208 8.09057 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.030856 B = 0.009014 C = 0.007586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.236240 B = 3105.538404 C = 3689.941766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.343 6.343 3 C -0.009 4.009 4 C -0.153 4.153 5 C -0.188 4.188 6 C 0.044 3.956 7 C 0.242 3.758 8 N -0.512 5.512 9 C -0.095 4.095 10 C -0.221 4.221 11 C 0.051 3.949 12 C -0.542 4.542 13 H 0.063 0.937 14 C 0.005 3.995 15 N -0.816 5.816 16 Si 1.113 2.887 17 H -0.268 1.268 18 H -0.267 1.267 19 H -0.262 1.262 20 H 0.050 0.950 21 H 0.058 0.942 22 H 0.108 0.892 23 H 0.135 0.865 24 H 0.140 0.860 25 H 0.141 0.859 26 H 0.123 0.877 27 H 0.093 0.907 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 2.008 -1.890 7.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.258 6.258 3 C -0.053 4.053 4 C -0.171 4.171 5 C -0.191 4.191 6 C 0.005 3.995 7 C -0.074 4.074 8 N -0.191 5.191 9 C -0.113 4.113 10 C -0.241 4.241 11 C 0.048 3.952 12 C -0.570 4.570 13 H 0.081 0.919 14 C -0.211 4.211 15 N -0.440 5.440 16 Si 0.931 3.069 17 H -0.192 1.192 18 H -0.192 1.192 19 H -0.187 1.187 20 H 0.068 0.932 21 H 0.077 0.923 22 H 0.126 0.874 23 H 0.152 0.848 24 H 0.158 0.842 25 H 0.159 0.841 26 H 0.141 0.859 27 H 0.111 0.889 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.188 1.904 -0.481 5.548 hybrid contribution -1.621 0.278 -0.183 1.655 sum -6.809 2.183 -0.664 7.181 Atomic orbital electron populations 1.23103 0.78440 1.04241 1.01160 1.85920 1.21647 1.28007 1.90272 1.19352 0.92039 0.84339 1.09578 1.20930 0.99090 0.91515 1.05611 1.18813 0.92671 0.93043 1.14577 1.18187 1.02855 0.95616 0.82891 1.30053 0.90835 0.90827 0.95685 1.81160 1.11889 1.12132 1.13894 1.20545 0.93675 0.97339 0.99750 1.20654 0.98465 0.92202 1.12783 1.17557 0.89811 0.94308 0.93512 1.20533 1.00962 0.97229 1.38260 0.91907 1.28282 1.00457 1.00221 0.92160 1.70580 1.39332 1.15821 1.18251 0.83049 0.73322 0.73517 0.77053 1.19215 1.19224 1.18655 0.93161 0.92297 0.87359 0.84778 0.84207 0.84146 0.85921 0.88917 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 9.81 113.37 1.11 1.89 15 2 O -0.34 -15.48 9.80 -89.56 -0.88 -16.35 15 3 C -0.01 -0.41 6.72 23.08 0.16 -0.26 15 4 C -0.15 -5.84 8.67 22.34 0.19 -5.65 15 5 C -0.19 -6.57 5.11 -19.71 -0.10 -6.68 15 6 C 0.04 1.00 5.82 28.04 0.16 1.16 15 7 C 0.24 7.13 15.42 89.44 1.38 8.51 15 8 N -0.51 -18.21 18.54 20.01 0.37 -17.84 15 9 C -0.09 -3.81 9.61 22.00 0.21 -3.60 15 10 C -0.22 -10.94 7.89 22.47 0.18 -10.77 15 11 C 0.05 2.72 5.31 -21.20 -0.11 2.61 15 12 C -0.54 -30.04 8.65 23.40 0.20 -29.84 15 13 H 0.06 3.56 7.72 -2.91 -0.02 3.54 15 14 C 0.00 0.24 4.94 85.25 0.42 0.66 15 15 N -0.82 -43.79 12.32 21.83 0.27 -43.52 15 16 Si 1.11 44.26 30.00 68.60 2.06 46.31 15 17 H -0.27 -10.26 7.11 99.48 0.71 -9.56 15 18 H -0.27 -10.19 7.11 99.48 0.71 -9.48 15 19 H -0.26 -9.73 7.11 99.48 0.71 -9.02 15 20 H 0.05 1.41 7.67 -2.39 -0.02 1.39 15 21 H 0.06 1.58 7.67 -2.39 -0.02 1.56 15 22 H 0.11 2.69 8.14 -2.38 -0.02 2.67 15 23 H 0.13 4.15 6.31 -2.91 -0.02 4.13 15 24 H 0.14 2.34 8.08 -2.39 -0.02 2.32 15 25 H 0.14 2.24 8.08 -2.39 -0.02 2.22 15 26 H 0.12 4.17 8.06 -2.91 -0.02 4.14 15 27 H 0.09 4.86 6.49 -2.91 -0.02 4.84 15 28 H 0.29 15.72 6.68 -92.71 -0.62 15.10 15 Total: -1.00 -66.45 254.82 6.95 -59.50 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 1.32 Total: 13.86 kcal Atomic # 6 Polarization: -45.76 SS G_CDS: 3.80 Total: -41.96 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 0.64 Total: -61.36 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.88 Total: -16.35 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.06 Total: 46.31 kcal Total: -66.45 6.95 -59.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075577170.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.794 kcal (2) G-P(sol) polarization free energy of solvation -66.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds