Wall clock time and date at job start Mon Mar 30 2020 02:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99820 * 2 1 4 4 H 1.48501 * 109.46946 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46585 * 299.99480 * 3 2 1 6 6 H 1.48497 * 109.47187 * 59.99973 * 3 2 1 7 7 C 1.37879 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99913 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00107 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47162 * 179.97438 * 9 7 2 11 11 S 1.81395 * 109.47118 * 180.02562 * 10 9 7 12 12 O 1.42093 * 109.47391 * 63.61199 * 11 10 9 13 13 C 1.81404 * 103.00154 * 180.02562 * 11 10 9 14 14 C 1.52994 * 109.47522 * 179.97438 * 13 11 10 15 15 C 1.53506 * 114.17458 * 174.99577 * 14 13 11 16 16 N 1.47481 * 87.93471 * 139.67146 * 15 14 13 17 17 C 1.47488 * 87.83530 * 332.99146 * 16 15 14 18 18 H 0.96996 * 120.00415 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.46795 * 60.00148 * 9 7 2 20 20 H 1.08993 * 109.47239 * 300.00201 * 9 7 2 21 21 H 1.09002 * 109.47037 * 59.99633 * 10 9 7 22 22 H 1.09002 * 109.47071 * 300.00226 * 10 9 7 23 23 H 1.09002 * 109.47056 * 59.99280 * 13 11 10 24 24 H 1.09008 * 109.46547 * 300.00201 * 13 11 10 25 25 H 1.09007 * 113.38456 * 41.91686 * 14 13 11 26 26 H 1.09007 * 113.47650 * 24.90928 * 15 14 13 27 27 H 1.08997 * 113.53552 * 254.44649 * 15 14 13 28 28 H 1.00901 * 110.99857 * 84.68111 * 16 15 14 29 29 H 1.08997 * 113.47731 * 141.77388 * 17 16 15 30 30 H 1.09001 * 113.47471 * 272.24480 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3963 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 16 1.3384 -5.2330 0.0021 12 8 0.5854 -5.3458 -1.1976 13 6 2.6651 -6.4702 0.0025 14 6 2.0545 -7.8730 0.0037 15 6 3.0826 -9.0063 -0.1180 16 7 2.2943 -9.7565 0.8774 17 6 1.8300 -8.4596 1.4045 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5575 -0.8880 20 1 0.6248 -2.5564 0.8919 21 1 2.8727 -3.6039 0.8909 22 1 2.8713 -3.6047 -0.8890 23 1 3.2814 -6.3418 0.8924 24 1 3.2812 -6.3424 -0.8876 25 1 1.1989 -7.9730 -0.6643 26 1 4.0767 -8.7304 0.2340 27 1 3.0990 -9.4753 -1.1018 28 1 1.5386 -10.2588 0.4360 29 1 0.7839 -8.4647 1.7106 30 1 2.4898 -8.0378 2.1627 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088090695.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:40 Heat of formation + Delta-G solvation = -14.674914 kcal Electronic energy + Delta-G solvation = -12366.914289 eV Core-core repulsion = 10096.710075 eV Total energy + Delta-G solvation = -2270.204215 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.83628 -35.12221 -33.68007 -30.91755 -30.84862 -25.97407 -25.45580 -24.33040 -21.25890 -20.21197 -17.10246 -16.73196 -16.40377 -14.94669 -14.88609 -14.58337 -14.41226 -13.84179 -13.40817 -13.11115 -12.66487 -12.39880 -12.28644 -11.57661 -11.30805 -11.19638 -10.98096 -10.73420 -10.65011 -10.14504 -10.06049 -9.48083 -9.13668 -8.71024 -8.42959 -7.67614 -6.05655 -4.09880 1.98568 3.19587 3.27748 3.35322 3.39023 3.95191 4.22681 4.28780 4.42129 4.59578 5.17117 5.24342 5.29475 5.34165 5.46647 5.52431 5.67322 5.72492 5.83963 5.94914 6.11778 6.14266 6.80048 7.04472 7.48887 7.60270 7.89666 8.31022 8.95154 9.54438 11.05043 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.080417 B = 0.005371 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.102472 B = 5211.583914 C = 5347.302923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.414 4.414 11 S 1.215 4.785 12 O -0.856 6.856 13 C -0.445 4.445 14 C -0.139 4.139 15 C 0.019 3.981 16 N -0.655 5.655 17 C 0.017 3.983 18 H 0.262 0.738 19 H 0.022 0.978 20 H 0.029 0.971 21 H 0.104 0.896 22 H 0.071 0.929 23 H 0.115 0.885 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.336 0.664 29 H 0.076 0.924 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 -14.800 4.716 16.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.553 4.553 11 S 1.416 4.584 12 O -0.852 6.852 13 C -0.581 4.581 14 C -0.160 4.160 15 C -0.112 4.112 16 N -0.281 5.281 17 C -0.113 4.113 18 H 0.072 0.928 19 H 0.041 0.959 20 H 0.047 0.953 21 H 0.123 0.877 22 H 0.089 0.911 23 H 0.133 0.867 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.117 0.883 27 H 0.085 0.915 28 H 0.150 0.850 29 H 0.095 0.905 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.591 -15.270 5.276 16.550 hybrid contribution 1.247 1.707 -2.644 3.385 sum 4.838 -13.563 2.633 14.639 Atomic orbital electron populations 1.69966 1.06062 1.26768 1.50366 1.25045 0.94904 0.99352 0.95155 0.86489 0.80009 0.83546 0.77690 1.19752 1.20977 1.20790 1.21197 0.93047 0.90450 1.51155 0.92455 1.18794 0.92985 0.90191 0.98116 1.27574 1.09482 1.12396 1.05894 1.70173 0.88036 0.87267 1.12904 1.93084 1.56724 1.84141 1.51241 1.27657 1.15311 1.08173 1.07005 1.23632 0.99519 0.93798 0.99024 1.23608 0.98646 0.92761 0.96156 1.65556 1.20690 1.16485 1.25372 1.23722 1.01658 0.89797 0.96162 0.92823 0.95936 0.95290 0.87708 0.91055 0.86674 0.89861 0.88564 0.88339 0.91544 0.85022 0.90548 0.87729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.04 0.97 4.98 -27.88 -0.14 0.83 16 10 C -0.41 -8.05 5.86 37.16 0.22 -7.83 16 11 S 1.22 18.99 13.14 -107.50 -1.41 17.58 16 12 O -0.86 -19.13 18.14 -35.23 -0.64 -19.77 16 13 C -0.45 -5.31 5.83 37.15 0.22 -5.09 16 14 C -0.14 -1.52 3.95 -90.09 -0.36 -1.87 16 15 C 0.02 0.19 8.20 -7.54 -0.06 0.13 16 16 N -0.66 -6.41 8.76 -122.63 -1.07 -7.48 16 17 C 0.02 0.15 8.19 -7.53 -0.06 0.09 16 18 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 19 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 20 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 22 H 0.07 1.46 8.14 -51.92 -0.42 1.04 16 23 H 0.11 1.07 7.81 -51.92 -0.41 0.67 16 24 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 25 H 0.10 1.18 8.12 -51.93 -0.42 0.76 16 26 H 0.10 0.94 8.10 -51.92 -0.42 0.52 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.34 2.83 8.85 -39.29 -0.35 2.48 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.10 0.84 7.87 -51.93 -0.41 0.44 16 LS Contribution 269.58 15.07 4.06 4.06 Total: -1.00 -35.57 269.58 -8.45 -44.02 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -4.50 Total: -1.66 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: -0.60 Total: -27.18 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: -0.34 Total: -33.56 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.64 Total: -19.77 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 18.99 SS G_CDS: -1.41 Total: 17.58 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -35.57 -8.45 -44.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088090695.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.346 kcal (2) G-P(sol) polarization free energy of solvation -35.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds