Wall clock time and date at job start Mon Mar 30 2020 02:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99820 * 2 1 4 4 H 1.48501 * 109.46946 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46585 * 299.99480 * 3 2 1 6 6 H 1.48497 * 109.47187 * 59.99973 * 3 2 1 7 7 C 1.37879 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99913 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00107 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47162 * 179.97438 * 9 7 2 11 11 S 1.81395 * 109.47118 * 180.02562 * 10 9 7 12 12 O 1.42093 * 109.47391 * 63.61199 * 11 10 9 13 13 C 1.81404 * 103.00154 * 180.02562 * 11 10 9 14 14 C 1.52994 * 109.47522 * 179.97438 * 13 11 10 15 15 C 1.53506 * 114.17458 * 174.99577 * 14 13 11 16 16 N 1.47481 * 87.93471 * 139.67146 * 15 14 13 17 17 C 1.47488 * 87.83530 * 332.99146 * 16 15 14 18 18 H 0.96996 * 120.00415 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.46795 * 60.00148 * 9 7 2 20 20 H 1.08993 * 109.47239 * 300.00201 * 9 7 2 21 21 H 1.09002 * 109.47037 * 59.99633 * 10 9 7 22 22 H 1.09002 * 109.47071 * 300.00226 * 10 9 7 23 23 H 1.09002 * 109.47056 * 59.99280 * 13 11 10 24 24 H 1.09008 * 109.46547 * 300.00201 * 13 11 10 25 25 H 1.09007 * 113.38456 * 41.91686 * 14 13 11 26 26 H 1.09007 * 113.47650 * 24.90928 * 15 14 13 27 27 H 1.08997 * 113.53552 * 254.44649 * 15 14 13 28 28 H 1.00901 * 110.99857 * 84.68111 * 16 15 14 29 29 H 1.08997 * 113.47731 * 141.77388 * 17 16 15 30 30 H 1.09001 * 113.47471 * 272.24480 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3963 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 16 1.3384 -5.2330 0.0021 12 8 0.5854 -5.3458 -1.1976 13 6 2.6651 -6.4702 0.0025 14 6 2.0545 -7.8730 0.0037 15 6 3.0826 -9.0063 -0.1180 16 7 2.2943 -9.7565 0.8774 17 6 1.8300 -8.4596 1.4045 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5575 -0.8880 20 1 0.6248 -2.5564 0.8919 21 1 2.8727 -3.6039 0.8909 22 1 2.8713 -3.6047 -0.8890 23 1 3.2814 -6.3418 0.8924 24 1 3.2812 -6.3424 -0.8876 25 1 1.1989 -7.9730 -0.6643 26 1 4.0767 -8.7304 0.2340 27 1 3.0990 -9.4753 -1.1018 28 1 1.5386 -10.2588 0.4360 29 1 0.7839 -8.4647 1.7106 30 1 2.4898 -8.0378 2.1627 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088090695.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:40 Heat of formation + Delta-G solvation = -43.785423 kcal Electronic energy + Delta-G solvation = -12368.176616 eV Core-core repulsion = 10096.710075 eV Total energy + Delta-G solvation = -2271.466541 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.61290 -36.72481 -35.73617 -32.87569 -31.82289 -27.40667 -26.68909 -25.35111 -23.09297 -21.08544 -18.78696 -18.27579 -17.41284 -16.60518 -16.22856 -16.00792 -15.71881 -15.14384 -14.71568 -14.33989 -14.01087 -13.84267 -13.40883 -13.22330 -12.91549 -12.64747 -12.49607 -12.16258 -12.00414 -11.88446 -11.49603 -11.41766 -10.69620 -10.61154 -9.59881 -9.07951 -8.22495 -6.36009 0.67120 1.39250 1.40116 1.53149 1.88633 2.39408 2.94584 3.09797 3.21142 3.42985 3.75045 4.22112 4.27899 4.39868 4.49082 4.59114 4.68353 4.80568 4.85968 5.00241 5.00856 5.03227 5.31158 5.41619 5.50534 5.76185 6.16639 6.35289 6.79318 7.33746 8.88791 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.080417 B = 0.005371 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.102472 B = 5211.583914 C = 5347.302923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.034 3.966 10 C -0.417 4.417 11 S 1.268 4.732 12 O -0.929 6.929 13 C -0.426 4.426 14 C -0.149 4.149 15 C 0.024 3.976 16 N -0.663 5.663 17 C 0.020 3.980 18 H 0.266 0.734 19 H -0.027 1.027 20 H 0.025 0.975 21 H 0.140 0.860 22 H 0.056 0.944 23 H 0.157 0.843 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.067 0.933 28 H 0.341 0.659 29 H 0.088 0.912 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.132 -15.473 6.169 17.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.004 4.004 10 C -0.555 4.555 11 S 1.471 4.529 12 O -0.924 6.924 13 C -0.566 4.566 14 C -0.170 4.170 15 C -0.108 4.108 16 N -0.289 5.289 17 C -0.109 4.109 18 H 0.074 0.926 19 H -0.009 1.009 20 H 0.044 0.956 21 H 0.158 0.842 22 H 0.075 0.925 23 H 0.174 0.826 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.126 0.874 27 H 0.086 0.914 28 H 0.156 0.844 29 H 0.107 0.893 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.532 -15.911 6.730 18.140 hybrid contribution 0.675 1.758 -3.087 3.616 sum 6.207 -14.153 3.643 15.878 Atomic orbital electron populations 1.70102 1.07910 1.27977 1.51365 1.26048 0.95815 1.03575 0.94567 0.85340 0.79031 0.78439 0.77872 1.18425 1.20964 1.19580 1.21692 0.93661 0.91856 1.50916 0.91752 1.18661 0.93696 0.92455 0.95552 1.27524 1.08469 1.12670 1.06871 1.69315 0.87817 0.85512 1.10237 1.92964 1.60752 1.85052 1.53668 1.27506 1.13562 1.06716 1.08786 1.23704 0.99543 0.93243 1.00544 1.23627 0.98694 0.91934 0.96517 1.65581 1.21163 1.16761 1.25410 1.23848 1.03040 0.88921 0.95115 0.92565 1.00859 0.95631 0.84177 0.92496 0.82558 0.90512 0.90463 0.87358 0.91391 0.84414 0.89326 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 3 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.54 -30.94 9.11 25.60 0.23 -30.71 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.83 4.98 29.85 0.15 1.98 16 10 C -0.42 -16.08 5.86 71.98 0.42 -15.66 16 11 S 1.27 38.93 13.14 -56.49 -0.74 38.19 16 12 O -0.93 -42.76 18.14 -148.98 -2.70 -45.46 16 13 C -0.43 -8.97 5.83 71.98 0.42 -8.55 16 14 C -0.15 -2.91 3.95 -10.45 -0.04 -2.95 16 15 C 0.02 0.40 8.20 83.58 0.69 1.09 16 16 N -0.66 -11.13 8.76 -541.89 -4.75 -15.88 16 17 C 0.02 0.30 8.19 83.58 0.68 0.99 16 18 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 19 H -0.03 -1.68 8.14 -2.39 -0.02 -1.69 16 20 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 21 H 0.14 4.31 8.14 -2.39 -0.02 4.29 16 22 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.16 2.11 7.81 -2.39 -0.02 2.09 16 24 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.08 1.83 8.12 -2.38 -0.02 1.81 16 26 H 0.11 1.67 8.10 -2.38 -0.02 1.65 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.34 5.04 8.85 -89.69 -0.79 4.25 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.12 1.41 7.87 -2.39 -0.02 1.39 16 Total: -1.00 -79.35 269.58 -2.55 -81.89 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 0.32 Total: 5.63 kcal Atomic # 6 Polarization: -56.47 SS G_CDS: 3.01 Total: -53.46 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -4.46 Total: -72.94 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -2.70 Total: -45.46 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 38.93 SS G_CDS: -0.74 Total: 38.19 kcal Total: -79.35 -2.55 -81.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088090695.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.108 kcal (2) G-P(sol) polarization free energy of solvation -79.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds