Wall clock time and date at job start Mon Mar 30 2020 03:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35706 * 116.99699 * 2 1 4 4 C 1.39037 * 119.54848 * 359.95392 * 3 2 1 5 5 C 1.37467 * 121.47718 * 180.02562 * 4 3 2 6 6 C 1.40880 * 120.11273 * 359.97438 * 5 4 3 7 7 C 1.40487 * 120.65400 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00444 * 155.65809 * 7 6 5 9 9 C 1.39936 * 119.99851 * 335.65260 * 7 6 5 10 10 N 1.30903 * 119.99777 * 341.90224 * 9 7 6 11 11 Si 1.86796 * 120.00232 * 161.89000 * 9 7 6 12 12 H 1.48507 * 109.47112 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46879 * 120.00142 * 11 9 7 14 14 H 1.48501 * 109.47607 * 240.00478 * 11 9 7 15 15 C 1.46503 * 118.69813 * 0.02562 * 6 5 4 16 16 C 1.41127 * 133.90613 * 180.26008 * 15 6 5 17 17 C 1.34865 * 107.78639 * 180.11838 * 16 15 6 18 18 N 1.36483 * 109.48047 * 359.64339 * 17 16 15 19 19 H 0.97000 * 125.57206 * 180.22358 * 18 17 16 20 20 C 1.37912 * 108.84930 * 0.22407 * 18 17 16 21 21 H 1.09004 * 109.46875 * 60.00519 * 1 2 3 22 22 H 1.09004 * 109.47400 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.48007 * 300.00589 * 1 2 3 24 24 H 1.07992 * 119.25857 * 0.04394 * 4 3 2 25 25 H 1.08006 * 119.93998 * 179.97438 * 5 4 3 26 26 H 0.97003 * 119.99604 * 179.97438 * 10 9 7 27 27 H 1.07997 * 126.10779 * 0.02562 * 16 15 6 28 28 H 1.08007 * 125.26137 * 179.90135 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 1.2785 2.3692 -0.0010 5 6 1.8609 3.6144 -0.0015 6 6 3.2643 3.7383 -0.0006 7 6 3.8715 5.0051 -0.0017 8 1 4.8731 5.1243 0.3845 9 6 3.1787 6.1126 -0.5032 10 7 2.1400 5.9378 -1.2805 11 14 3.7358 7.8405 -0.0634 12 1 4.9254 7.7666 0.8225 13 1 4.0877 8.5778 -1.3035 14 1 2.6376 8.5507 0.6401 15 6 4.0781 2.5200 0.0004 16 6 5.4672 2.2710 0.0061 17 6 5.6461 0.9343 0.0014 18 7 4.4311 0.3124 0.0009 19 1 4.2883 -0.6470 0.0009 20 6 3.4399 1.2713 0.0003 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3635 0.5139 0.8898 24 1 0.2015 2.2902 -0.0010 25 1 1.2416 4.4992 -0.0027 26 1 1.6595 6.7056 -1.6278 27 1 6.2476 3.0175 0.0116 28 1 6.6029 0.4332 0.0024 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089204592.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:00 Heat of formation + Delta-G solvation = 14.331906 kcal Electronic energy + Delta-G solvation = -14031.697150 eV Core-core repulsion = 11627.306814 eV Total energy + Delta-G solvation = -2404.390336 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.99182 -37.72759 -35.31371 -32.88446 -30.29458 -28.28828 -28.04888 -26.30761 -24.39646 -21.06634 -20.42095 -19.39873 -17.73658 -16.93968 -15.68426 -14.92368 -14.75510 -14.64348 -14.06234 -13.19114 -13.08410 -12.60041 -11.94375 -11.86786 -11.76576 -11.20225 -10.95024 -10.89262 -10.79398 -10.53496 -9.85311 -9.64043 -9.59125 -8.92905 -8.08742 -6.96475 -6.78727 -6.41330 -4.09823 2.48091 2.99326 3.07774 3.13633 3.33516 3.91670 3.93360 4.23954 4.46466 4.62353 5.70524 5.74760 5.81910 5.89586 5.96474 6.17542 6.45029 6.58488 6.83049 6.99353 7.11914 7.16923 7.37124 7.66311 7.82716 8.04802 8.14774 8.23294 8.50297 8.65081 8.77133 8.88219 9.06904 10.13977 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.031989 B = 0.010260 C = 0.007948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.101635 B = 2728.479641 C = 3521.950036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.342 6.342 3 C -0.052 4.052 4 C -0.125 4.125 5 C -0.206 4.206 6 C 0.137 3.863 7 C -0.435 4.435 8 H 0.081 0.919 9 C 0.072 3.928 10 N -0.780 5.780 11 Si 0.910 3.090 12 H -0.259 1.259 13 H -0.274 1.274 14 H -0.271 1.271 15 C -0.161 4.161 16 C -0.166 4.166 17 C -0.030 4.030 18 N -0.592 5.592 19 H 0.404 0.596 20 C 0.115 3.885 21 H 0.041 0.959 22 H 0.077 0.923 23 H 0.041 0.959 24 H 0.096 0.904 25 H 0.120 0.880 26 H 0.281 0.719 27 H 0.127 0.873 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.259 -4.382 1.567 4.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.258 6.258 3 C -0.097 4.097 4 C -0.145 4.145 5 C -0.227 4.227 6 C 0.134 3.866 7 C -0.463 4.463 8 H 0.099 0.901 9 C -0.147 4.147 10 N -0.404 5.404 11 Si 0.734 3.266 12 H -0.182 1.182 13 H -0.200 1.200 14 H -0.197 1.197 15 C -0.166 4.166 16 C -0.193 4.193 17 C -0.155 4.155 18 N -0.195 5.195 19 H 0.238 0.762 20 C 0.007 3.993 21 H 0.060 0.940 22 H 0.096 0.904 23 H 0.059 0.941 24 H 0.114 0.886 25 H 0.138 0.862 26 H 0.092 0.908 27 H 0.145 0.855 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.212 -4.544 1.418 4.765 hybrid contribution -0.179 0.485 0.018 0.518 sum 0.033 -4.059 1.436 4.306 Atomic orbital electron populations 1.22623 0.81127 1.01258 1.00342 1.85723 1.19077 1.28837 1.92170 1.17265 0.87632 0.83601 1.21239 1.20413 0.96874 0.92357 1.04876 1.20678 0.94364 0.95026 1.12658 1.18042 0.90842 0.89940 0.87801 1.19435 1.01510 0.91638 1.33722 0.90070 1.25991 0.94145 1.01805 0.92726 1.69905 1.15887 1.33246 1.21366 0.86236 0.79952 0.81099 0.79343 1.18217 1.19952 1.19657 1.19119 0.92340 0.91523 1.13595 1.20357 0.95289 0.93914 1.09697 1.21375 0.88067 0.93170 1.12930 1.41476 1.04780 1.07194 1.66040 0.76177 1.17326 0.86715 0.88530 1.06686 0.94004 0.90439 0.94081 0.88608 0.86237 0.90816 0.85534 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.79 101.05 0.99 1.70 15 2 O -0.34 -7.32 10.48 -18.82 -0.20 -7.52 15 3 C -0.05 -1.26 6.71 -38.77 -0.26 -1.52 15 4 C -0.13 -3.07 8.95 -39.57 -0.35 -3.42 15 5 C -0.21 -5.51 8.69 -38.86 -0.34 -5.85 15 6 C 0.14 3.76 5.73 -104.72 -0.60 3.16 15 7 C -0.43 -11.54 8.99 -38.10 -0.34 -11.88 15 8 H 0.08 2.07 7.91 -52.49 -0.42 1.66 15 9 C 0.07 1.80 5.14 -17.31 -0.09 1.71 15 10 N -0.78 -20.02 10.98 55.55 0.61 -19.41 15 11 Si 0.91 18.39 29.60 -169.99 -5.03 13.36 15 12 H -0.26 -5.18 7.11 56.52 0.40 -4.77 15 13 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 14 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 15 C -0.16 -4.18 6.21 -104.72 -0.65 -4.83 15 16 C -0.17 -3.73 10.74 -39.68 -0.43 -4.15 15 17 C -0.03 -0.57 11.85 -16.68 -0.20 -0.77 15 18 N -0.59 -12.08 6.14 -10.52 -0.06 -12.15 15 19 H 0.40 6.93 8.96 -40.82 -0.37 6.56 15 20 C 0.11 2.81 7.19 -83.86 -0.60 2.21 15 21 H 0.04 0.68 7.62 -51.93 -0.40 0.29 15 22 H 0.08 1.02 8.14 -51.93 -0.42 0.60 15 23 H 0.04 0.65 7.62 -51.93 -0.40 0.26 15 24 H 0.10 2.08 6.15 -52.49 -0.32 1.76 15 25 H 0.12 3.24 6.18 -52.48 -0.32 2.92 15 26 H 0.28 6.49 8.30 -40.82 -0.34 6.15 15 27 H 0.13 2.60 8.06 -52.49 -0.42 2.18 15 28 H 0.15 2.19 8.06 -52.48 -0.42 1.76 15 LS Contribution 245.51 15.07 3.70 3.70 Total: -1.00 -29.85 245.51 -6.48 -36.33 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -2.62 Total: 9.32 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -2.87 Total: -23.64 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 0.55 Total: -31.55 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.20 Total: -7.52 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.85 -6.48 -36.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089204592.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.657 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds