Wall clock time and date at job start Mon Mar 30 2020 02:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35706 * 116.99699 * 2 1 4 4 C 1.39037 * 119.54848 * 359.95392 * 3 2 1 5 5 C 1.37467 * 121.47718 * 180.02562 * 4 3 2 6 6 C 1.40880 * 120.11273 * 359.97438 * 5 4 3 7 7 C 1.40487 * 120.65400 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00444 * 155.65809 * 7 6 5 9 9 C 1.39936 * 119.99851 * 335.65260 * 7 6 5 10 10 N 1.30903 * 119.99777 * 341.90224 * 9 7 6 11 11 Si 1.86796 * 120.00232 * 161.89000 * 9 7 6 12 12 H 1.48507 * 109.47112 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46879 * 120.00142 * 11 9 7 14 14 H 1.48501 * 109.47607 * 240.00478 * 11 9 7 15 15 C 1.46503 * 118.69813 * 0.02562 * 6 5 4 16 16 C 1.41127 * 133.90613 * 180.26008 * 15 6 5 17 17 C 1.34865 * 107.78639 * 180.11838 * 16 15 6 18 18 N 1.36483 * 109.48047 * 359.64339 * 17 16 15 19 19 H 0.97000 * 125.57206 * 180.22358 * 18 17 16 20 20 C 1.37912 * 108.84930 * 0.22407 * 18 17 16 21 21 H 1.09004 * 109.46875 * 60.00519 * 1 2 3 22 22 H 1.09004 * 109.47400 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.48007 * 300.00589 * 1 2 3 24 24 H 1.07992 * 119.25857 * 0.04394 * 4 3 2 25 25 H 1.08006 * 119.93998 * 179.97438 * 5 4 3 26 26 H 0.97003 * 119.99604 * 179.97438 * 10 9 7 27 27 H 1.07997 * 126.10779 * 0.02562 * 16 15 6 28 28 H 1.08007 * 125.26137 * 179.90135 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 1.2785 2.3692 -0.0010 5 6 1.8609 3.6144 -0.0015 6 6 3.2643 3.7383 -0.0006 7 6 3.8715 5.0051 -0.0017 8 1 4.8731 5.1243 0.3845 9 6 3.1787 6.1126 -0.5032 10 7 2.1400 5.9378 -1.2805 11 14 3.7358 7.8405 -0.0634 12 1 4.9254 7.7666 0.8225 13 1 4.0877 8.5778 -1.3035 14 1 2.6376 8.5507 0.6401 15 6 4.0781 2.5200 0.0004 16 6 5.4672 2.2710 0.0061 17 6 5.6461 0.9343 0.0014 18 7 4.4311 0.3124 0.0009 19 1 4.2883 -0.6470 0.0009 20 6 3.4399 1.2713 0.0003 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3635 0.5139 0.8898 24 1 0.2015 2.2902 -0.0010 25 1 1.2416 4.4992 -0.0027 26 1 1.6595 6.7056 -1.6278 27 1 6.2476 3.0175 0.0116 28 1 6.6029 0.4332 0.0024 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089204592.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:59 Heat of formation + Delta-G solvation = -4.585728 kcal Electronic energy + Delta-G solvation = -14032.517480 eV Core-core repulsion = 11627.306814 eV Total energy + Delta-G solvation = -2405.210666 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.75299 -39.41384 -37.15780 -34.72903 -32.06736 -30.08137 -29.84239 -27.83681 -26.24967 -22.90506 -22.19158 -21.13985 -19.52555 -18.70875 -17.47537 -16.66348 -16.38161 -16.34333 -15.70644 -14.95175 -14.77842 -14.32709 -13.70777 -13.53807 -13.40156 -12.87450 -12.69630 -12.56280 -12.38620 -12.17332 -11.65781 -11.44819 -11.44628 -10.77404 -9.84805 -8.79396 -8.63444 -8.25878 -6.03598 0.68519 1.24533 1.41257 1.54478 1.57625 2.19647 2.23375 2.60638 2.74703 2.86846 3.77001 4.33204 4.46761 4.48868 4.49036 4.70195 4.73136 4.78837 5.03450 5.12927 5.30237 5.39943 5.56891 5.83835 5.99202 6.10001 6.25122 6.38581 6.65734 6.84758 6.96006 7.11543 7.19118 8.33950 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.031989 B = 0.010260 C = 0.007948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.101635 B = 2728.479641 C = 3521.950036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.348 6.348 3 C -0.039 4.039 4 C -0.143 4.143 5 C -0.231 4.231 6 C 0.098 3.902 7 C -0.470 4.470 8 H 0.078 0.922 9 C 0.032 3.968 10 N -0.816 5.816 11 Si 0.986 3.014 12 H -0.256 1.256 13 H -0.265 1.265 14 H -0.264 1.264 15 C -0.184 4.184 16 C -0.211 4.211 17 C 0.019 3.981 18 N -0.578 5.578 19 H 0.422 0.578 20 C 0.080 3.920 21 H 0.042 0.958 22 H 0.118 0.882 23 H 0.046 0.954 24 H 0.117 0.883 25 H 0.103 0.897 26 H 0.289 0.711 27 H 0.135 0.865 28 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.193 -5.780 1.790 6.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.264 6.264 3 C -0.085 4.085 4 C -0.163 4.163 5 C -0.253 4.253 6 C 0.095 3.905 7 C -0.499 4.499 8 H 0.096 0.904 9 C -0.184 4.184 10 N -0.441 5.441 11 Si 0.806 3.194 12 H -0.180 1.180 13 H -0.189 1.189 14 H -0.189 1.189 15 C -0.189 4.189 16 C -0.237 4.237 17 C -0.108 4.108 18 N -0.181 5.181 19 H 0.260 0.740 20 C -0.028 4.028 21 H 0.061 0.939 22 H 0.137 0.863 23 H 0.065 0.935 24 H 0.135 0.865 25 H 0.121 0.879 26 H 0.099 0.901 27 H 0.153 0.847 28 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.124 -5.994 1.640 6.315 hybrid contribution -0.461 0.637 -0.059 0.788 sum 0.664 -5.357 1.580 5.624 Atomic orbital electron populations 1.22982 0.78493 1.04113 1.00655 1.85707 1.21751 1.27206 1.91772 1.17432 0.88085 0.84392 1.18625 1.20588 0.98115 0.91943 1.05654 1.20633 0.94433 0.95410 1.14778 1.18441 0.91575 0.91248 0.89206 1.19613 1.01957 0.92639 1.35680 0.90416 1.26857 0.93992 1.05642 0.91894 1.69956 1.17127 1.34803 1.22258 0.85105 0.79513 0.75531 0.79228 1.17964 1.18947 1.18869 1.19596 0.94341 0.91743 1.13257 1.20620 0.94125 0.95987 1.12944 1.22193 0.89415 0.92146 1.07086 1.41551 1.04297 1.07789 1.64483 0.73999 1.17524 0.87660 0.89325 1.08260 0.93886 0.86350 0.93536 0.86549 0.87891 0.90053 0.84698 0.77465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 9.79 113.37 1.11 2.12 15 2 O -0.35 -14.28 10.48 -90.26 -0.95 -15.22 15 3 C -0.04 -1.90 6.71 22.80 0.15 -1.75 15 4 C -0.14 -7.17 8.95 22.28 0.20 -6.97 15 5 C -0.23 -12.98 8.69 22.73 0.20 -12.78 15 6 C 0.10 5.65 5.73 -19.93 -0.11 5.54 15 7 C -0.47 -26.14 8.99 23.23 0.21 -25.94 15 8 H 0.08 4.16 7.91 -2.91 -0.02 4.14 15 9 C 0.03 1.63 5.14 85.24 0.44 2.07 15 10 N -0.82 -43.63 10.98 21.83 0.24 -43.39 15 11 Si 0.99 38.56 29.60 68.60 2.03 40.59 15 12 H -0.26 -9.78 7.11 99.48 0.71 -9.07 15 13 H -0.26 -9.85 7.11 99.48 0.71 -9.15 15 14 H -0.26 -9.90 7.11 99.48 0.71 -9.20 15 15 C -0.18 -9.71 6.21 -19.93 -0.12 -9.83 15 16 C -0.21 -9.27 10.74 22.20 0.24 -9.03 15 17 C 0.02 0.64 11.85 83.19 0.99 1.63 15 18 N -0.58 -21.89 6.14 -187.20 -1.15 -23.04 15 19 H 0.42 12.89 8.96 -92.71 -0.83 12.06 15 20 C 0.08 3.89 7.19 39.01 0.28 4.17 15 21 H 0.04 1.33 7.62 -2.38 -0.02 1.31 15 22 H 0.12 2.69 8.14 -2.39 -0.02 2.67 15 23 H 0.05 1.39 7.62 -2.39 -0.02 1.38 15 24 H 0.12 5.12 6.15 -2.91 -0.02 5.10 15 25 H 0.10 5.96 6.18 -2.91 -0.02 5.94 15 26 H 0.29 13.80 8.30 -92.71 -0.77 13.03 15 27 H 0.14 5.52 8.06 -2.91 -0.02 5.50 15 28 H 0.21 4.75 8.06 -2.91 -0.02 4.73 15 Total: -1.00 -67.51 245.51 4.11 -63.40 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.36 Total: 28.43 kcal Atomic # 6 Polarization: -54.34 SS G_CDS: 3.57 Total: -50.77 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: -0.91 Total: -66.43 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.95 Total: -15.22 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -67.51 4.11 -63.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089204592.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.811 kcal (2) G-P(sol) polarization free energy of solvation -67.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds