Wall clock time and date at job start Mon Mar 30 2020 02:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00268 * 2 1 4 4 C 1.38467 * 120.08941 * 359.97438 * 3 2 1 5 5 C 1.38639 * 120.57448 * 180.02562 * 4 3 2 6 6 C 1.37831 * 120.41943 * 359.97438 * 5 4 3 7 7 C 1.39589 * 119.76465 * 0.02562 * 6 5 4 8 8 C 1.46654 * 133.93409 * 179.97438 * 7 6 5 9 9 C 1.34324 * 107.05364 * 180.02562 * 8 7 6 10 10 N 1.36951 * 109.91765 * 359.97438 * 9 8 7 11 11 C 1.37161 * 125.09613 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99968 * 158.33581 * 11 10 9 13 13 C 1.38830 * 120.00079 * 338.33600 * 11 10 9 14 14 N 1.31456 * 119.99818 * 349.51502 * 13 11 10 15 15 Si 1.86798 * 120.00211 * 169.51681 * 13 11 10 16 16 H 1.48505 * 109.46838 * 94.77376 * 15 13 11 17 17 H 1.48498 * 109.47212 * 214.77333 * 15 13 11 18 18 H 1.48502 * 109.46998 * 334.77651 * 15 13 11 19 19 C 1.38151 * 109.80821 * 0.24240 * 10 9 8 20 20 H 1.08994 * 109.47313 * 300.00361 * 1 2 3 21 21 H 1.09001 * 109.46743 * 60.00487 * 1 2 3 22 22 H 1.08996 * 109.47202 * 180.02562 * 1 2 3 23 23 H 1.07997 * 119.71277 * 0.04158 * 4 3 2 24 24 H 1.08001 * 119.78683 * 179.97438 * 5 4 3 25 25 H 1.07996 * 120.11694 * 180.02562 * 6 5 4 26 26 H 1.08003 * 126.47866 * 359.97438 * 8 7 6 27 27 H 1.07998 * 125.03827 * 179.97438 * 9 8 7 28 28 H 0.96996 * 120.00156 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2938 2.3733 -0.0005 5 6 1.9128 3.6138 -0.0011 6 6 3.2879 3.7076 -0.0006 7 6 4.0617 2.5459 0.0000 8 6 5.5048 2.2845 0.0001 9 6 5.6635 0.9506 0.0002 10 7 4.4400 0.3352 0.0006 11 6 4.2398 -1.0217 0.0003 12 1 3.3013 -1.4292 0.3459 13 6 5.2437 -1.8714 -0.4444 14 7 6.2992 -1.3792 -1.0541 15 14 5.0946 -3.7140 -0.1764 16 1 4.5072 -4.3442 -1.3861 17 1 6.4406 -4.2880 0.0767 18 1 4.2173 -3.9747 0.9931 19 6 3.4377 1.2860 -0.0046 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 0.0005 23 1 0.2155 2.3131 -0.0003 24 1 1.3136 4.5124 -0.0019 25 1 3.7649 4.6765 -0.0006 26 1 6.2914 3.0245 -0.0006 27 1 6.6148 0.4394 -0.0001 28 1 7.0007 -1.9727 -1.3645 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107838029.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:58 Heat of formation + Delta-G solvation = 3.752271 kcal Electronic energy + Delta-G solvation = -14242.568976 eV Core-core repulsion = 11837.719873 eV Total energy + Delta-G solvation = -2404.849103 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.91217 -39.70339 -37.18247 -34.86975 -32.25887 -30.34239 -29.45183 -27.82954 -26.58718 -23.04665 -22.22472 -21.63447 -19.81841 -17.92611 -17.53318 -16.73295 -16.57180 -16.37992 -15.66428 -15.33254 -15.03128 -14.34522 -13.75088 -13.57262 -13.41552 -13.02643 -12.80762 -12.54860 -12.43835 -12.16964 -11.91876 -11.85578 -11.70168 -10.99689 -9.94329 -8.82658 -8.65305 -8.26259 -6.18901 0.54066 0.93528 1.34113 1.39249 1.50710 2.10803 2.22202 2.61397 2.94489 3.03643 3.27184 4.21425 4.24629 4.37799 4.44578 4.52419 4.60976 4.71506 4.78453 5.04729 5.14455 5.30845 5.34990 5.37175 5.64736 5.81663 5.88465 6.12229 6.43381 6.56482 6.71787 7.16871 7.55092 8.44219 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.030320 B = 0.012050 C = 0.008771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.258547 B = 2323.169250 C = 3191.661371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.343 6.343 3 C 0.116 3.884 4 C -0.226 4.226 5 C -0.124 4.124 6 C -0.126 4.126 7 C -0.116 4.116 8 C -0.284 4.284 9 C 0.053 3.947 10 N -0.301 5.301 11 C -0.359 4.359 12 H 0.105 0.895 13 C -0.005 4.005 14 N -0.886 5.886 15 Si 1.012 2.988 16 H -0.267 1.267 17 H -0.265 1.265 18 H -0.260 1.260 19 C -0.016 4.016 20 H 0.065 0.935 21 H 0.063 0.937 22 H 0.111 0.889 23 H 0.150 0.850 24 H 0.152 0.848 25 H 0.135 0.865 26 H 0.152 0.848 27 H 0.160 0.840 28 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.774 2.692 1.813 8.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.257 6.257 3 C 0.070 3.930 4 C -0.247 4.247 5 C -0.143 4.143 6 C -0.145 4.145 7 C -0.122 4.122 8 C -0.309 4.309 9 C -0.083 4.083 10 N 0.035 4.965 11 C -0.487 4.487 12 H 0.123 0.877 13 C -0.208 4.208 14 N -0.519 5.519 15 Si 0.832 3.168 16 H -0.192 1.192 17 H -0.189 1.189 18 H -0.184 1.184 19 C -0.126 4.126 20 H 0.084 0.916 21 H 0.081 0.919 22 H 0.129 0.871 23 H 0.167 0.833 24 H 0.170 0.830 25 H 0.153 0.847 26 H 0.169 0.831 27 H 0.177 0.823 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.542 2.029 1.713 7.996 hybrid contribution 0.176 -0.801 -0.139 0.832 sum -7.366 1.228 1.573 7.632 Atomic orbital electron populations 1.23252 0.77209 1.04809 1.02066 1.86132 1.23004 1.27480 1.89124 1.18339 0.88333 0.85629 1.00735 1.20943 0.99773 0.90935 1.13036 1.20810 0.93734 0.97136 1.02652 1.20565 0.93618 0.96086 1.04240 1.19273 0.93575 0.91882 1.07461 1.21598 0.93804 0.94520 1.20944 1.22131 0.90058 0.92325 1.03802 1.40384 1.03571 1.04757 1.47749 1.20277 1.04190 0.79643 1.44561 0.87713 1.26537 0.94658 1.06430 0.93223 1.70001 1.09715 1.38654 1.33500 0.84666 0.78701 0.74150 0.79295 1.19179 1.18933 1.18396 1.18452 0.88783 0.90376 1.14958 0.91633 0.91891 0.87121 0.83259 0.82997 0.84702 0.83052 0.82253 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.81 113.37 1.11 1.71 15 2 O -0.34 -15.06 8.90 -92.38 -0.82 -15.88 15 3 C 0.12 5.38 6.70 22.60 0.15 5.53 15 4 C -0.23 -8.40 9.03 22.42 0.20 -8.20 15 5 C -0.12 -4.30 10.02 22.27 0.22 -4.08 15 6 C -0.13 -5.00 10.10 22.50 0.23 -4.77 15 7 C -0.12 -5.66 6.37 -20.18 -0.13 -5.79 15 8 C -0.28 -14.01 11.09 23.57 0.26 -13.74 15 9 C 0.05 2.89 9.88 83.00 0.82 3.71 15 10 N -0.30 -17.40 2.91 -342.68 -1.00 -18.40 15 11 C -0.36 -20.59 9.63 84.00 0.81 -19.78 15 12 H 0.11 5.95 6.66 -2.91 -0.02 5.93 15 13 C 0.00 -0.24 5.35 84.89 0.45 0.21 15 14 N -0.89 -48.58 10.86 21.64 0.24 -48.34 15 15 Si 1.01 41.08 29.56 68.60 2.03 43.11 15 16 H -0.27 -10.48 7.11 99.48 0.71 -9.78 15 17 H -0.26 -10.14 7.11 99.48 0.71 -9.43 15 18 H -0.26 -10.26 7.11 99.48 0.71 -9.55 15 19 C -0.02 -0.84 6.76 39.00 0.26 -0.57 15 20 H 0.07 1.62 7.66 -2.39 -0.02 1.60 15 21 H 0.06 1.59 7.66 -2.39 -0.02 1.57 15 22 H 0.11 2.62 8.14 -2.39 -0.02 2.60 15 23 H 0.15 4.31 6.27 -2.91 -0.02 4.29 15 24 H 0.15 3.87 8.06 -2.91 -0.02 3.85 15 25 H 0.14 4.43 8.06 -2.91 -0.02 4.40 15 26 H 0.15 6.34 8.06 -2.91 -0.02 6.32 15 27 H 0.16 8.83 6.37 -2.91 -0.02 8.81 15 28 H 0.28 14.21 8.31 -92.71 -0.77 13.44 15 Total: -1.00 -67.23 243.55 6.01 -61.22 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 1.17 Total: 24.06 kcal Atomic # 6 Polarization: -50.16 SS G_CDS: 4.40 Total: -45.76 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: -0.76 Total: -66.74 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.82 Total: -15.88 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -67.23 6.01 -61.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107838029.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.977 kcal (2) G-P(sol) polarization free energy of solvation -67.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds