Wall clock time and date at job start Mon Mar 30 2020 03:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 116.99961 * 2 1 4 4 C 1.39148 * 119.93284 * 359.97438 * 3 2 1 5 5 C 1.38522 * 120.44518 * 180.02562 * 4 3 2 6 6 C 1.37665 * 120.30392 * 0.25917 * 5 4 3 7 7 C 1.50701 * 120.07555 * 179.72359 * 6 5 4 8 8 C 1.47195 * 109.47041 * 265.00222 * 7 6 5 9 9 N 6.96461 * 116.27115 * 336.73383 * 2 1 3 10 10 C 1.40730 * 119.85524 * 359.49743 * 6 5 4 11 11 C 1.41405 * 120.22116 * 180.25094 * 10 6 5 12 12 H 1.08000 * 119.99709 * 334.16724 * 11 10 6 13 13 C 1.39935 * 120.00164 * 154.16792 * 11 10 6 14 14 N 1.30827 * 119.99825 * 343.80312 * 13 11 10 15 15 Si 1.86796 * 119.99710 * 163.80718 * 13 11 10 16 16 H 1.48495 * 109.47493 * 94.96322 * 15 13 11 17 17 H 1.48501 * 109.47238 * 214.96341 * 15 13 11 18 18 H 1.48504 * 109.47495 * 334.95924 * 15 13 11 19 19 C 1.38100 * 119.93030 * 180.02562 * 3 2 1 20 20 H 1.08991 * 109.47272 * 60.00139 * 1 2 3 21 21 H 1.09001 * 109.46991 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46975 * 299.99590 * 1 2 3 23 23 H 1.08008 * 119.78103 * 0.02562 * 4 3 2 24 24 H 1.08000 * 119.84757 * 179.97438 * 5 4 3 25 25 H 1.08996 * 109.46814 * 24.99902 * 7 6 5 26 26 H 1.09001 * 109.47418 * 144.99862 * 7 6 5 27 27 H 0.97000 * 119.99471 * 179.97438 * 14 13 11 28 28 H 1.08000 * 120.15465 * 359.95445 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2868 2.3770 -0.0005 5 6 1.9046 3.6168 -0.0011 6 6 3.2782 3.7084 -0.0065 7 6 3.9449 5.0599 -0.0133 8 6 4.2652 5.4420 -1.3983 9 7 4.5117 5.7374 -2.4669 10 6 4.0584 2.5373 -0.0007 11 6 5.4699 2.6224 -0.0009 12 1 5.9583 3.4933 -0.4125 13 6 6.2339 1.5783 0.5323 14 7 5.6716 0.6847 1.3048 15 14 8.0567 1.4607 0.1411 16 1 8.8382 2.1124 1.2225 17 1 8.4497 0.0323 0.0383 18 1 8.3313 2.1436 -1.1487 19 6 3.4252 1.2815 -0.0005 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.2085 2.3151 -0.0005 24 1 1.3059 4.5157 -0.0019 25 1 3.2719 5.7992 0.4211 26 1 4.8627 5.0153 0.5729 27 1 6.2012 -0.0393 1.6741 28 1 4.0147 0.3766 -0.0002 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000143905169.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:27 Heat of formation + Delta-G solvation = -20.066230 kcal Electronic energy + Delta-G solvation = -13814.714269 eV Core-core repulsion = 11408.832318 eV Total energy + Delta-G solvation = -2405.881951 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.50443 -38.62481 -37.13058 -35.40065 -32.79848 -31.50633 -29.13774 -27.11245 -26.78221 -22.97403 -21.78435 -19.47452 -18.20476 -17.93307 -16.96007 -16.43652 -16.31729 -16.07574 -15.15211 -14.86634 -14.37069 -14.05202 -13.87644 -13.55723 -13.34712 -12.96941 -12.78892 -12.70536 -12.51050 -12.13567 -12.05653 -11.60975 -11.44696 -11.17703 -10.94734 -9.32790 -8.76867 -8.51862 -6.36899 0.97236 1.09532 1.40734 1.50306 1.55570 2.01057 2.03530 2.20931 2.73107 2.82076 3.40502 3.87232 4.33575 4.48995 4.51060 4.58370 4.61982 4.75841 4.83116 5.02663 5.18014 5.21476 5.41033 5.58535 5.93526 5.98202 6.13693 6.20137 6.50196 6.80651 6.92027 6.98202 7.09848 8.33689 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.019934 B = 0.012770 C = 0.008321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.279878 B = 2192.195982 C = 3364.207395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.125 3.875 4 C -0.319 4.319 5 C -0.044 4.044 6 C -0.238 4.238 7 C 0.044 3.956 8 C 0.248 3.752 9 N -0.516 5.516 10 C 0.124 3.876 11 C -0.481 4.481 12 H 0.085 0.915 13 C 0.040 3.960 14 N -0.814 5.814 15 Si 0.969 3.031 16 H -0.255 1.255 17 H -0.272 1.272 18 H -0.266 1.266 19 C -0.233 4.233 20 H 0.056 0.944 21 H 0.113 0.887 22 H 0.057 0.943 23 H 0.126 0.874 24 H 0.138 0.862 25 H 0.142 0.858 26 H 0.117 0.883 27 H 0.287 0.713 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.943 2.187 2.336 5.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.270 6.270 3 C 0.081 3.919 4 C -0.339 4.339 5 C -0.062 4.062 6 C -0.240 4.240 7 C 0.004 3.996 8 C -0.068 4.068 9 N -0.195 5.195 10 C 0.121 3.879 11 C -0.510 4.510 12 H 0.103 0.897 13 C -0.176 4.176 14 N -0.439 5.439 15 Si 0.791 3.209 16 H -0.179 1.179 17 H -0.197 1.197 18 H -0.190 1.190 19 C -0.254 4.254 20 H 0.074 0.926 21 H 0.131 0.869 22 H 0.075 0.925 23 H 0.144 0.856 24 H 0.156 0.844 25 H 0.160 0.840 26 H 0.135 0.865 27 H 0.098 0.902 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.446 2.242 0.894 5.059 hybrid contribution 0.504 -0.668 0.257 0.876 sum -3.942 1.573 1.151 4.398 Atomic orbital electron populations 1.23133 0.77604 1.04436 1.01562 1.85972 1.22816 1.28679 1.89558 1.19157 0.92261 0.84049 0.96448 1.20827 0.98872 0.92044 1.22144 1.20691 0.93463 0.96778 0.95278 1.19510 0.93332 0.93014 1.18184 1.18055 1.03601 0.94875 0.83049 1.30028 0.90770 0.90317 0.95665 1.81055 1.11931 1.12633 1.13854 1.17485 0.93514 0.90266 0.86648 1.19778 0.91403 1.04268 1.35551 0.89731 1.26670 1.05110 0.93805 0.92063 1.69905 1.40074 1.11767 1.22120 0.85375 0.77198 0.78554 0.79800 1.17923 1.19666 1.19028 1.20542 0.90579 0.98745 1.15496 0.92555 0.86869 0.92454 0.85598 0.84445 0.84039 0.86492 0.90218 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.81 113.37 1.11 1.91 15 2 O -0.36 -15.32 10.49 -92.43 -0.97 -16.29 15 3 C 0.13 5.89 6.67 22.46 0.15 6.04 15 4 C -0.32 -12.89 9.05 22.56 0.20 -12.69 15 5 C -0.04 -1.67 9.65 22.20 0.21 -1.45 15 6 C -0.24 -9.86 5.15 -19.39 -0.10 -9.96 15 7 C 0.04 1.41 5.20 28.04 0.15 1.55 15 8 C 0.25 9.22 15.03 89.44 1.34 10.57 15 9 N -0.52 -21.55 18.54 20.00 0.37 -21.18 15 10 C 0.12 6.20 5.56 -21.30 -0.12 6.08 15 11 C -0.48 -24.03 8.14 23.46 0.19 -23.84 15 12 H 0.08 4.02 6.65 -2.91 -0.02 4.00 15 13 C 0.04 1.95 5.16 85.25 0.44 2.39 15 14 N -0.81 -41.74 10.97 21.82 0.24 -41.50 15 15 Si 0.97 37.61 29.59 68.60 2.03 39.64 15 16 H -0.25 -9.27 7.11 99.48 0.71 -8.56 15 17 H -0.27 -10.32 7.11 99.48 0.71 -9.62 15 18 H -0.27 -10.48 7.11 99.48 0.71 -9.78 15 19 C -0.23 -12.37 8.62 22.82 0.20 -12.17 15 20 H 0.06 1.51 7.65 -2.39 -0.02 1.49 15 21 H 0.11 2.58 8.14 -2.39 -0.02 2.56 15 22 H 0.06 1.54 7.65 -2.39 -0.02 1.52 15 23 H 0.13 4.25 6.27 -2.91 -0.02 4.23 15 24 H 0.14 4.00 8.06 -2.91 -0.02 3.98 15 25 H 0.14 3.22 8.05 -2.39 -0.02 3.20 15 26 H 0.12 3.72 7.04 -2.39 -0.02 3.71 15 27 H 0.29 13.46 8.30 -92.71 -0.77 12.69 15 28 H 0.10 5.53 6.22 -2.91 -0.02 5.52 15 Total: -1.00 -62.56 252.96 6.63 -55.93 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 1.18 Total: 14.95 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 3.78 Total: -31.56 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: 0.61 Total: -62.68 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.97 Total: -16.29 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Total: -62.56 6.63 -55.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143905169.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.868 kcal (2) G-P(sol) polarization free energy of solvation -62.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds